BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0336.2
(88 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ZSW3_MOUSE (Q8CFL8) Zinc finger SWIM domain containing protein 3 30 1.1
YNCA_CAEEL (P34544) Hypothetical protein R05D3.11 in chromosome III 30 1.4
PTA_ECOLI (P39184) Phosphate acetyltransferase (EC 2.3.1.8) (Pho... 30 1.4
PR31_SCHPO (O42904) Pre-mRNA splicing factor prp31 29 1.8
HAP4_YEAST (P14064) Transcriptional activator HAP4 29 1.8
SNXG_RAT (P57769) Sorting nexin 16 28 3.1
CAD6_MOUSE (P97326) Cadherin-6 precursor (Kidney-cadherin) (K-ca... 28 5.4
PNT2_DROME (P51023) ETS-like protein pointed, isoform P2 (D-ETS-2) 27 7.0
ZSW3_HUMAN (Q96MP5) Zinc finger SWIM domain containing protein 3 27 9.2
LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related pro... 27 9.2
HO3_RAT (O70453) Heme oxygenase 3 (EC 1.14.99.3) (HO-3) 27 9.2
>ZSW3_MOUSE (Q8CFL8) Zinc finger SWIM domain containing protein 3
Length = 695
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 25 VQVQDHI--DAVSSILVNENHYSRFVALDGCSCSCS 58
VQ H+ +A SS+ V S V+ DGCSCSCS
Sbjct: 516 VQNSTHLVDEAGSSVAVQLLENSHQVSKDGCSCSCS 551
>YNCA_CAEEL (P34544) Hypothetical protein R05D3.11 in chromosome III
Length = 1327
Score = 29.6 bits (65), Expect = 1.4
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 8 NSIGNDLEKNQVASSRNVQVQDHIDAVSSILVNENHYSRFVALDGCS-CSCSCSCSAASQ 66
NS+ ND + S R Q D +D S V+ D CS CSC CS AS+
Sbjct: 927 NSVDNDEPPSLEYSKRRFQYNDQVDISS------------VSRDFCSGCSCDGDCSDASK 974
>PTA_ECOLI (P39184) Phosphate acetyltransferase (EC 2.3.1.8)
(Phosphotransacetylase)
Length = 713
Score = 29.6 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 10 IGNDLEKNQVASSRNVQVQDHIDAVSSILVNENHYSRFVAL 50
+GN E N+VA+S+ V++ I+ V +V E++ R V L
Sbjct: 434 LGNPAEINRVAASQGVELGAGIEIVDPEVVRESYVGRLVEL 474
>PR31_SCHPO (O42904) Pre-mRNA splicing factor prp31
Length = 518
Score = 29.3 bits (64), Expect = 1.8
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 7 TNSIGNDLEKNQVASSRNV--QVQDHIDAVSSILVNENHYSRFVALDGCSCSCSCSCSAA 64
T +I +DLE + + S ++ ++ D I + LV E ++ RF L + C
Sbjct: 108 TGNIEDDLEYHLIVDSNSIAMEIDDEILRLHR-LVKEWYHDRFPELSSLVLNAFDYCKTV 166
Query: 65 SQLLND 70
S LLND
Sbjct: 167 SSLLND 172
>HAP4_YEAST (P14064) Transcriptional activator HAP4
Length = 554
Score = 29.3 bits (64), Expect = 1.8
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 5 NRTNSIGNDLEKNQVASSRNVQVQDHIDAVSSILVNENHYSRFVALDGCSCSCSCSCSAA 64
+ N+ N + + AS ++ HI + L+N+++Y F+ D S+A
Sbjct: 106 SNNNNNNNIISNRKQASKEKRKIPRHIQTIDEKLINDSNYLAFLKFD--DLENEKFHSSA 163
Query: 65 SQLLNDRWTA-AIQSYNNSKDS 85
S + + +++ + SY N K S
Sbjct: 164 SSISSPSYSSPSFSSYRNRKKS 185
>SNXG_RAT (P57769) Sorting nexin 16
Length = 344
Score = 28.5 bits (62), Expect = 3.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 7 TNSIGNDLEKNQVASSRNVQVQDHIDAVSSILVNENHYSRFVALD 51
+NS LE + V + R+ VQD +D+ SS+ + ++F D
Sbjct: 37 SNSSKGQLEDSSVGTCRHTNVQDQMDSASSVCGSPLIRTKFTGTD 81
>CAD6_MOUSE (P97326) Cadherin-6 precursor (Kidney-cadherin)
(K-cadherin)
Length = 790
Score = 27.7 bits (60), Expect = 5.4
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 18 QVASSRNVQVQDHIDAVSSILVNENHYSR 46
+ ASS N +QD+ D + IL +N Y+R
Sbjct: 530 EAASSSNFTIQDNKDNTAGILTRKNGYNR 558
>PNT2_DROME (P51023) ETS-like protein pointed, isoform P2 (D-ETS-2)
Length = 718
Score = 27.3 bits (59), Expect = 7.0
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 4 LNRTNSIGNDLEKNQVASSRNVQVQDHIDAVSSILVNENHYSRFVALDGCSCSCSCS 60
L++ N IGN + S+ ++ + +SS++ ++N + + + GC CS S
Sbjct: 76 LSQLNGIGNSGNHSGQVSTMRLKKNRKVTFLSSLVESKNIFIKEEPIHGCKDLCSLS 132
>ZSW3_HUMAN (Q96MP5) Zinc finger SWIM domain containing protein 3
Length = 696
Score = 26.9 bits (58), Expect = 9.2
Identities = 14/26 (53%), Positives = 16/26 (60%)
Query: 33 AVSSILVNENHYSRFVALDGCSCSCS 58
A SS+ V S V+ DGCSCSCS
Sbjct: 527 AGSSVDVQLLEDSHQVSKDGCSCSCS 552
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein
1 precursor (LRP) (Alpha-2-macroglobulin receptor) (A2MR)
(Apolipoprotein E receptor) (APOER) (CD91)
Length = 4544
Score = 26.9 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 17/36 (46%), Gaps = 8/36 (22%)
Query: 52 GCSCSCS--------CSCSAASQLLNDRWTAAIQSY 79
GCS +CS CSC +L D T IQSY
Sbjct: 1191 GCSHNCSVAPGEGIVCSCPLGMELGPDNHTCQIQSY 1226
>HO3_RAT (O70453) Heme oxygenase 3 (EC 1.14.99.3) (HO-3)
Length = 290
Score = 26.9 bits (58), Expect = 9.2
Identities = 16/51 (31%), Positives = 23/51 (44%)
Query: 14 LEKNQVASSRNVQVQDHIDAVSSILVNENHYSRFVALDGCSCSCSCSCSAA 64
+E+ A N+Q+ +D SI V E + LDG C C +AA
Sbjct: 194 VEEATKAFEYNMQIFSELDQAGSIPVRETLKNGLSILDGKGGVCKCPFNAA 244
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.121 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,741,954
Number of Sequences: 164201
Number of extensions: 252728
Number of successful extensions: 760
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 11
length of query: 88
length of database: 59,974,054
effective HSP length: 64
effective length of query: 24
effective length of database: 49,465,190
effective search space: 1187164560
effective search space used: 1187164560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0336.2