BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0336.10
         (114 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YDFC_SCHPO (Q10484) Hypothetical protein C17C9.12 in chromosome I      45  4e-05
CIN9_RAT (O08562) Sodium channel protein type IX alpha subunit (...    30  1.3
DPOG_NEUCR (Q9Y767) DNA polymerase gamma (EC 2.7.7.7) (Mitochond...    29  1.7
YMEI_YEAST (Q03433) Hypothetical 32.0 kDa protein in CAT2-AMD1 i...    28  3.8
MSP2_GLORO (P53022) Major sperm protein 2                              28  3.8
YD35_MYCPN (P75443) Hypothetical protein MPN335 (F10_orf741)           28  4.9
U2AF_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxi...    28  4.9
U2AF_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxi...    28  4.9
ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain i...    28  4.9
CIN9_RABIT (Q28644) Sodium channel protein type IX alpha subunit...    28  4.9
SPD2_PEA (Q9ZTR0) Spermidine synthase 2 (EC 2.5.1.16) (Putrescin...    27  6.4
SPD1_ORYSA (Q9SMB1) Spermidine synthase 1 (EC 2.5.1.16) (Putresc...    27  6.4
BLAC_STRAU (P10509) Beta-lactamase precursor (EC 3.5.2.6) (Penic...    27  6.4
SPDE_COFAR (O82147) Spermidine synthase (EC 2.5.1.16) (Putrescin...    27  8.4
REL_HUMAN (Q04864) C-Rel proto-oncogene protein (C-Rel protein)        27  8.4

>YDFC_SCHPO (Q10484) Hypothetical protein C17C9.12 in chromosome I
          Length = 319

 Score = 44.7 bits (104), Expect = 4e-05
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 11  PAELTFLTEKKDFCKLHLINKTTNYVAFRLRLSKPEKYGVTPREGGIIMPQGTYDIIVSR 70
           P  LT L +    C L L N     + F+++ + P++Y V P  G I         ++ +
Sbjct: 12  PRPLTRLVK----CDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQ 67

Query: 71  KSDKLPPPGFECTDRFFIQS-------MALSVKDLFTENRGKRHVEEKELK 114
             D  P PG +C D+F +QS         + + D++T+   K ++ E++++
Sbjct: 68  PLDHEPAPGTKCRDKFLVQSTELKPELQGMDIADIWTQ-VSKANISERKIR 117


>CIN9_RAT (O08562) Sodium channel protein type IX alpha subunit
           (Voltage-gated sodium channel alpha subunit Nav1.7)
           (Peripheral sodium channel 1) (PN1)
          Length = 1984

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 75  LPPPGFECTDRFFIQSMALSVKDLFTENRGKRHVEEKE 112
           LPPPG +    F  QS+AL ++   +E + K H +EK+
Sbjct: 4   LPPPGPQSFVHFTKQSLAL-IEQRISEEKAKEHKDEKK 40


>DPOG_NEUCR (Q9Y767) DNA polymerase gamma (EC 2.7.7.7)
           (Mitochondrial DNA polymerase catalytic subunit)
          Length = 1305

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 2   DHAEILQIEPAELTFLTEKKDFCKLHLINKTTNYVAFRLRLSKPEKYGVTPREGGIIMPQ 61
           +H   L ++ AE  FLT  K F   HL  K T++V  R   +K  + G T  +   ++PQ
Sbjct: 128 EHFHKLGVDAAE-PFLTHAKQFADAHLPPKPTSWVR-RSGWTKYNRDGTTEND---VLPQ 182

Query: 62  GT---YDIIVSRKSD 73
           G    +D+ V  K +
Sbjct: 183 GNMMCFDVEVMYKDN 197


>YMEI_YEAST (Q03433) Hypothetical 32.0 kDa protein in CAT2-AMD1
           intergenic region
          Length = 280

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 47  KYGVTPREGGIIMPQGTYDIIVSRKSDKLPPPGFECTDRFFIQSMALSVK 96
           KYG     G ++ P+   +I +S KS KLP P  + T+R       LS K
Sbjct: 160 KYG----HGWVLKPETLREIQLSYKSTKLPKPKRKNTNRIVALKKVLSSK 205


>MSP2_GLORO (P53022) Major sperm protein 2
          Length = 125

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 26 LHLINKTTNYVAFRLRLSKPEKYGVTPREGGIIMPQGTYDIIVS 69
          + +IN  TN + F  + +KP++  + P   G++ P+ + ++ +S
Sbjct: 30 VRVINPGTNRIGFAFKTTKPKRINMNP-PNGVLGPKESVNVAIS 72


>YD35_MYCPN (P75443) Hypothetical protein MPN335 (F10_orf741)
          Length = 741

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 15/47 (31%), Positives = 24/47 (50%)

Query: 66  IIVSRKSDKLPPPGFECTDRFFIQSMALSVKDLFTENRGKRHVEEKE 112
           I+ S    KL PP  +   +FF  ++  S +D   E + ++  EEKE
Sbjct: 371 IVPSFDDIKLDPPRVKKVYKFFSDTIIQSFRDYEAEEKERQEKEEKE 417


>U2AF_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2
           auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
           factor large subunit)
          Length = 475

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 17/43 (39%), Positives = 19/43 (43%)

Query: 39  RLRLSKPEKYGVTPREGGIIMPQGTYDIIVSRKSDKLPPPGFE 81
           R R SKP   G     GG+I           RK   +PPPGFE
Sbjct: 58  RRRRSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFE 100


>U2AF_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2
           auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
           factor large subunit) (hU2AF(65))
          Length = 475

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 17/43 (39%), Positives = 19/43 (43%)

Query: 39  RLRLSKPEKYGVTPREGGIIMPQGTYDIIVSRKSDKLPPPGFE 81
           R R SKP   G     GG+I           RK   +PPPGFE
Sbjct: 58  RRRRSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFE 100


>ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain
           isw-1 (EC 3.6.1.-)
          Length = 1009

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 43  SKPEKYGVTPREGGIIMPQGTYDIIVSRKSDKLPPPGFECTDRF--FIQSMALSVKDLFT 100
           SK   + +T R GG+ +   T D+++   SD  P    +  DR     Q   + V  L T
Sbjct: 502 SKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLIT 561

Query: 101 ENR-GKRHVEEKELK 114
           EN   +R +E+ E K
Sbjct: 562 ENTVDERIIEKAEAK 576


>CIN9_RABIT (Q28644) Sodium channel protein type IX alpha subunit
           (Voltage-gated sodium channel alpha subunit Nav1.7)
           (Schwann cell sodium channel) (Nas)
          Length = 1984

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 75  LPPPGFECTDRFFIQSMALSVKDLFTENRGKRHVEEKE 112
           LPPPG +   RF  QS+AL ++    E + K   EEK+
Sbjct: 4   LPPPGPQSFVRFTKQSLAL-IEQRIAEGKTKEPKEEKK 40


>SPD2_PEA (Q9ZTR0) Spermidine synthase 2 (EC 2.5.1.16) (Putrescine
           aminopropyltransferase 2) (SPDSY 2)
          Length = 342

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 60  PQGTYDIIVSRKSDKLPPPGFECTDRFFIQSMALSVK 96
           P+GTYD ++   SD +  P  E  ++ F QS+A +++
Sbjct: 198 PEGTYDAVIVDSSDPI-GPAQELFEKPFFQSVARALR 233


>SPD1_ORYSA (Q9SMB1) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine
           aminopropyltransferase 1) (SPDSY 1)
          Length = 323

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 60  PQGTYDIIVSRKSDKLPPPGFECTDRFFIQSMALSVK 96
           P+GTYD ++   SD +  P  E  ++ F QS+A +++
Sbjct: 178 PEGTYDAVIVDSSDPI-GPAQELFEKPFFQSVARALR 213


>BLAC_STRAU (P10509) Beta-lactamase precursor (EC 3.5.2.6)
           (Penicillinase)
          Length = 311

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 19/62 (30%), Positives = 27/62 (42%), Gaps = 11/62 (17%)

Query: 28  LINKTTNYVAFRLRLSKP----------EKYGVTPREGGIIMPQGTYDIIVSRKSDKLPP 77
           L+  TTN   FR  L             E+YGV   + G++ P G   +++S  S K  P
Sbjct: 232 LVANTTNRPTFRAGLPDDWVLADKTGGGEQYGVA-NDVGVVQPPGRAPLVLSVLSTKFDP 290

Query: 78  PG 79
            G
Sbjct: 291 KG 292


>SPDE_COFAR (O82147) Spermidine synthase (EC 2.5.1.16) (Putrescine
           aminopropyltransferase) (SPDSY)
          Length = 316

 Score = 26.9 bits (58), Expect = 8.4
 Identities = 13/38 (34%), Positives = 24/38 (62%), Gaps = 1/38 (2%)

Query: 59  MPQGTYDIIVSRKSDKLPPPGFECTDRFFIQSMALSVK 96
           +P+GTYD I+   SD +  P  E  ++ F +S+A +++
Sbjct: 170 VPEGTYDAIIVDSSDPI-GPAQELFEKPFFESVAKALR 206


>REL_HUMAN (Q04864) C-Rel proto-oncogene protein (C-Rel protein)
          Length = 619

 Score = 26.9 bits (58), Expect = 8.4
 Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 5/59 (8%)

Query: 61  QGTYDIIVSRKSDKLPPP-----GFECTDRFFIQSMALSVKDLFTENRGKRHVEEKELK 114
           +G   I +  K+D   P      G +C D ++        + LF +N G R V++KE+K
Sbjct: 58  KGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVK 116


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,309,266
Number of Sequences: 164201
Number of extensions: 560795
Number of successful extensions: 1054
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 15
length of query: 114
length of database: 59,974,054
effective HSP length: 90
effective length of query: 24
effective length of database: 45,195,964
effective search space: 1084703136
effective search space used: 1084703136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)