BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.8
(104 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla... 102 1e-22
CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla... 102 1e-22
CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla... 102 1e-22
CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla... 101 3e-22
CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla... 101 3e-22
CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl... 101 3e-22
CB2B_PINSY (P15194) Chlorophyll a-b binding protein type II 1B, ... 101 4e-22
CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl... 101 4e-22
CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop... 101 4e-22
CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla... 101 4e-22
CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ... 101 4e-22
CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloropl... 100 5e-22
CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloropl... 100 5e-22
CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII ty... 100 5e-22
CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloropl... 100 5e-22
CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl... 100 5e-22
CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloropl... 100 5e-22
CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl... 100 5e-22
CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla... 100 5e-22
CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl... 100 5e-22
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast
precursor (LHCII type I CAB-E) (LHCP)
Length = 266
Score = 102 bits (255), Expect = 1e-22
Identities = 51/78 (65%), Positives = 63/78 (80%), Gaps = 3/78 (3%)
Query: 15 EPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTG 74
EPLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TG
Sbjct: 180 EPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTG 236
Query: 75 KGPVQNLLDHFSDPFHNN 92
KGP++NL DH +DP +NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
Score = 37.4 bits (85), Expect = 0.006
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 52 GPDRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 109 GALGCVFPELLARNG 123
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast
precursor (LHCII type I CAB-C) (LHCP)
Length = 267
Score = 102 bits (255), Expect = 1e-22
Identities = 51/78 (65%), Positives = 63/78 (80%), Gaps = 3/78 (3%)
Query: 15 EPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTG 74
EPLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TG
Sbjct: 181 EPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 75 KGPVQNLLDHFSDPFHNN 92
KGP++NL DH +DP +NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
Score = 36.6 bits (83), Expect = 0.011
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 53 GPNRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 109
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 110 GALGCVFPELLARNG 124
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast
precursor (LHCI type III CAB-8)
Length = 273
Score = 102 bits (255), Expect = 1e-22
Identities = 48/77 (62%), Positives = 60/77 (77%)
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
GD YPGG LF+PL KD ++ ELK+KEIKNGRLAM+A LG+++QA +TG GP QNLL
Sbjct: 196 GDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLL 255
Query: 83 DHFSDPFHNNLLGSLNF 99
DH +DP +NN+L SL F
Sbjct: 256 DHLADPVNNNVLTSLKF 272
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast
precursor (LHCII type I CAB-2) (CAB-140) (LHCP)
Length = 267
Score = 101 bits (252), Expect = 3e-22
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 246
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 247 HLADPVNNN 255
Score = 38.1 bits (87), Expect = 0.004
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast
precursor (LHCII type I CAB-1) (LHCP)
Length = 266
Score = 101 bits (252), Expect = 3e-22
Identities = 47/69 (68%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 187 DLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 245
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 246 HLADPVNNN 254
Score = 37.0 bits (84), Expect = 0.008
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + EP YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 51 GSDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHCRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 108 GALGCVFPELLARNG 122
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180,
chloroplast precursor (LHCII type I CAB-165/180) (LHCP)
Length = 267
Score = 101 bits (252), Expect = 3e-22
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 246
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 247 HLADPVNNN 255
Score = 38.1 bits (87), Expect = 0.004
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type II 1B,
chloroplast precursor (CAB) (LHCP)
Length = 274
Score = 101 bits (251), Expect = 4e-22
Identities = 46/66 (69%), Positives = 57/66 (85%), Gaps = 1/66 (1%)
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 198 YPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 256
Query: 87 DPFHNN 92
DP +NN
Sbjct: 257 DPVNNN 262
Score = 38.1 bits (87), Expect = 0.004
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ Y G + EP YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 60 GPDRVLYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPENFAKNRELEVIHCRWAML 116
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 117 GALGCVFPELLARNG 131
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast
precursor (LHCII type I CAB-36) (LHCP)
Length = 265
Score = 101 bits (251), Expect = 4e-22
Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHVADPVANN 253
Score = 34.7 bits (78), Expect = 0.042
Identities = 25/75 (33%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + E YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 51 GEDRPKYLGPFS-EQTPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHCRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCVFPEILSKNG 122
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R,
chloroplast precursor (LHCII type I CAB-22R) (LHCP)
Length = 267
Score = 101 bits (251), Expect = 4e-22
Identities = 50/77 (64%), Positives = 62/77 (79%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 182 PLGEVI--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
Score = 34.3 bits (77), Expect = 0.054
Identities = 23/64 (35%), Positives = 34/64 (52%), Gaps = 3/64 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +P +D LS DPE FA+ + E+ + R AM+
Sbjct: 53 GPDRVKYLGPFSGEAPS-YLTGE--FPSDYGWDTAGLSADPETFAKNRELEVIHCRWAML 109
Query: 62 AWLG 65
LG
Sbjct: 110 GALG 113
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast
precursor (LHCII type I CAB-2) (LHCP)
Length = 263
Score = 101 bits (251), Expect = 4e-22
Identities = 51/77 (66%), Positives = 61/77 (78%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGGA FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 178 PLGEVV--DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 234
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
Score = 35.4 bits (80), Expect = 0.024
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
YL G+ +PG +D LS DPE FA+ + E+ + R AM+ LG L G
Sbjct: 66 YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLARNG 120
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type
I, chloroplast precursor (CAB) (LHCP)
Length = 264
Score = 101 bits (251), Expect = 4e-22
Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 179 PLGEGL--DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 235
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 236 GPIENLADHIADPVANN 252
Score = 35.4 bits (80), Expect = 0.024
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
YL G+ +PG +D LS DPE FA+ + E+ + R AM+ LG L+ G
Sbjct: 67 YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNG 121
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast
precursor (LHCII type I CAB-3B) (LHCP) (Fragments)
Length = 267
Score = 100 bits (250), Expect = 5e-22
Identities = 50/77 (64%), Positives = 62/77 (79%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 182 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 239 GPLENLADHIADPVNNN 255
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast
precursor (LHCII type I CAB-3A) (LHCP) (Fragments)
Length = 267
Score = 100 bits (250), Expect = 5e-22
Identities = 50/77 (64%), Positives = 62/77 (79%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 182 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 239 GPLENLADHIADPVNNN 255
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type
I CAB-1D) (LHCP) (Fragment)
Length = 116
Score = 100 bits (250), Expect = 5e-22
Identities = 50/77 (64%), Positives = 62/77 (79%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 31 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 87
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 88 GPLENLADHLADPVNNN 104
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast
precursor (LHCII type I CAB-1C) (LHCP) (Fragments)
Length = 265
Score = 100 bits (250), Expect = 5e-22
Identities = 50/77 (64%), Positives = 62/77 (79%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast
precursor (LHCII type I CAB-1B) (LHCP)
Length = 265
Score = 100 bits (250), Expect = 5e-22
Identities = 50/77 (64%), Positives = 62/77 (79%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
Score = 37.4 bits (85), Expect = 0.006
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 108 GALGCVFPELLARNG 122
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast
precursor (LHCII type I CAB-1A) (LHCP) (Fragments)
Length = 265
Score = 100 bits (250), Expect = 5e-22
Identities = 50/77 (64%), Positives = 62/77 (79%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast
precursor (LHCII type I CAB-37) (LHCP)
Length = 265
Score = 100 bits (250), Expect = 5e-22
Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLYDHVADPVANN 253
Score = 34.7 bits (78), Expect = 0.042
Identities = 25/75 (33%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + E YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 51 GEDRPKYLGPFS-EQTPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHCRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCVFPEILSKNG 122
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast
precursor (LHCII type I CAB-5) (LHCP) (Fragment)
Length = 237
Score = 100 bits (250), Expect = 5e-22
Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 152 PLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 208
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 209 GPIENLSDHIADPVANN 225
Score = 34.7 bits (78), Expect = 0.042
Identities = 25/75 (33%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + E YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 23 GEDRPKYLGPFS-EQTPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHCRWAML 79
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 80 GALGCVFPEILSKNG 94
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast
precursor (LHCII type I CAB-40) (LHCP)
Length = 267
Score = 100 bits (250), Expect = 5e-22
Identities = 50/77 (64%), Positives = 62/77 (79%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 182 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
Score = 37.4 bits (85), Expect = 0.006
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 53 GPDRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 109
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 110 GALGCVFPELLARNG 124
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.144 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,260,706
Number of Sequences: 164201
Number of extensions: 565715
Number of successful extensions: 1241
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 191
length of query: 104
length of database: 59,974,054
effective HSP length: 80
effective length of query: 24
effective length of database: 46,837,974
effective search space: 1124111376
effective search space used: 1124111376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0335a.8