BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0333b.7
         (293 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DRPE_CRAPL (P22242) Desiccation-related protein PCC13-62 precursor    265  8e-71
CP12_MESAU (P24453) Cytochrome P450 1A2 (EC 1.14.14.1) (CYPIA2) ...    33  0.83
ODP2_AZOVI (P10802) Dihydrolipoyllysine-residue acetyltransferas...    32  2.4
RBSC_ECOLI (P04984) Ribose transport system permease protein rbsC      31  3.2
APSA_EMENI (Q00083) Anucleate primary sterigmata protein A             31  4.1
TRM9_RAT (Q91ZY8) Tripartite motif-containing protein 9 (SNAP-25...    30  7.1
GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)          30  7.1
DP3A_VIBCH (P52022) DNA polymerase III alpha subunit (EC 2.7.7.7)      30  7.1
SYFB_PYRFU (Q8U260) Phenylalanyl-tRNA synthetase beta chain (EC ...    30  9.2
EAA3_HUMAN (P43005) Excitatory amino acid transporter 3 (Sodium-...    30  9.2

>DRPE_CRAPL (P22242) Desiccation-related protein PCC13-62 precursor
          Length = 313

 Score =  265 bits (678), Expect = 8e-71
 Identities = 141/290 (48%), Positives = 188/290 (64%), Gaps = 24/290 (8%)

Query: 13  SSLVLSLFIPIFCSF---------EDVV--DVDLVQFHLNLEFLEAEFYFYGTLGWGLDH 61
           S+ ++S F+ + CS          +D+   DV L++F LNLE LEAEF+ +   G G+D 
Sbjct: 9   SAALVSFFLALICSCSYAAWHHEKDDIPKSDVSLLEFPLNLELLEAEFFAWAAFGKGIDE 68

Query: 62  ADPKLAQGGPPPVGGQYAYLDPILRDIFSQFAFQQAGHLRAITEEVKGFPRPLLNISKEA 121
            +P+LA+GGP P+G Q A L P +RDI +QFA+Q+ GH+RAI   V+GFPRPLL++S ++
Sbjct: 69  LEPELAKGGPSPIGVQKANLSPFIRDIIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKS 128

Query: 122 FAEVINSAFGKPLNPPFDPYANSLNYLLAAYMLPYVGLTGYVGTNPKLQGVRTRNLVSGL 181
           FA V++SAFGK L PPFDPYAN +NYLLA Y++PYVGLTGYVG NPKL+   +R LV+GL
Sbjct: 129 FATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAGL 188

Query: 182 LGAKSGQDAMIRTLLYERRYLQVKPYQWTVYEVTHRLSLLRNDLGKK------------- 228
           L  ++GQDA+IR LLYER   +V+PY  TV E T+++S LRN LG K             
Sbjct: 189 LAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKISELRNKLGDKGVKDLGLIVEPEL 248

Query: 229 QAEGKVVGQVFGLNMYSLTYPRSPEEILRIVYGSGDEHVPGGFFPKGGNG 278
            AEGK+ G V   +  SL +PR+PE  L     +     P  F PK   G
Sbjct: 249 GAEGKISGNVLAGDKNSLAFPRTPERCLGSCTAAAMRPSPAAFIPKAPTG 298


>CP12_MESAU (P24453) Cytochrome P450 1A2 (EC 1.14.14.1) (CYPIA2)
           (P450-MC4) (Hepatic cytochrome P-450MC1)
          Length = 513

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 12/75 (16%)

Query: 211 VYEVTHRLSLLRN---DLGKKQAEGKVV---GQVFGLNMYSLTYPRSPEEILRIVYGSGD 264
           + E  H +S L+    ++G  +   +VV     V G   +   +PR  EE+LRIV GS D
Sbjct: 165 IKEANHLVSKLQKLTAEVGHFEPVNQVVESVANVIGAMCFGKNFPRKSEEMLRIVKGSSD 224

Query: 265 --EHVPGG----FFP 273
             E+V  G    FFP
Sbjct: 225 FVENVSSGNAVDFFP 239


>ODP2_AZOVI (P10802) Dihydrolipoyllysine-residue acetyltransferase
           component of pyruvate dehydrogenase complex (EC
           2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase
           component of pyruvate dehydrogenase complex)
          Length = 637

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 62  ADPKLAQGGPPPVGGQYAYLDPILRDIFSQFAFQQAG------HLRAITEEVKGFPRPLL 115
           A P  A  G P   G   +  P +R +  +F  + A         R + E+V+ + + ++
Sbjct: 319 AAPAPAPVGAPSRNGAKVHAGPAVRQLAREFGVELAAINSTGPRGRILKEDVQAYVKAMM 378

Query: 116 NISKEAFAEVINSAFGKPLNPPFD 139
             +KEA A    S  G P  PP D
Sbjct: 379 QKAKEAPAAGAASGAGIPPIPPVD 402


>RBSC_ECOLI (P04984) Ribose transport system permease protein rbsC
          Length = 321

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 131 GKPLNPPFDPYANSLNYLLAAYMLPYVGLTGYV---GTN---PKLQGVRTRNLVSGLLGA 184
           G+PL  P   +   + +L A YML +  L  Y+   G N    +L G+   N +  ++ +
Sbjct: 167 GRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINV-NKIKIIVYS 225

Query: 185 KSGQDAMIRTLLYERRYLQVKPYQWTVYEVTHRLSLLRNDLGKKQAEGKVVGQVFG 240
             G  A +  ++   R    +P   T YE+    +++         +G++VG + G
Sbjct: 226 LCGLLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIG 281


>APSA_EMENI (Q00083) Anucleate primary sterigmata protein A
          Length = 1676

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 28/104 (26%), Positives = 39/104 (36%), Gaps = 27/104 (25%)

Query: 118  SKEAFAEVINSAFGKPLNPPFDPYANSLNYLLAAYMLPYVGLTGYVGTNPKLQGVRTRNL 177
            S  +FA  +   F    NPPF P   S                   GT+P++    T+ +
Sbjct: 1354 SVSSFASELEERFNMQPNPPFAPQGYS------------------TGTDPRMIQAITQTM 1395

Query: 178  VSGLL-----GAKSGQDAMIRTLLYERRYLQVKPYQWTVYEVTH 216
            +   L      A SG+ +  R     RRY  V PY  T+Y   H
Sbjct: 1396 IGEFLWKYTRRAVSGEISNTR----HRRYFWVHPYTRTLYWSEH 1435


>TRM9_RAT (Q91ZY8) Tripartite motif-containing protein 9
           (SNAP-25-interacting RING finger protein)
          Length = 710

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/89 (25%), Positives = 38/89 (41%), Gaps = 9/89 (10%)

Query: 209 WTVYEVTHRLSLLRNDLGKKQAEGKV-----VGQVFGLNMYSLTYPRSPEEILRIVYGSG 263
           W +Y   +R   + N+    + EG +     +G +  LN  +LT+  + E+   I +   
Sbjct: 616 WAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKTLTFFVNNEQQGPIAF--- 672

Query: 264 DEHVPGGFFPKGGNGNIAKSYLHPNAPAP 292
            E+V G FFP        +  LH   P P
Sbjct: 673 -ENVEGLFFPAVSLNRNVQVTLHTGLPVP 700


>GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)
          Length = 1819

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 19/62 (30%), Positives = 27/62 (42%)

Query: 70  GPPPVGGQYAYLDPILRDIFSQFAFQQAGHLRAITEEVKGFPRPLLNISKEAFAEVINSA 129
           G PP   +  YL    RD F +F     G L+ +   V   P+P+L    E   +V+N  
Sbjct: 301 GCPPGHREEPYLTEAGRDAFDKFCRLHQGELQLLAGGVLQAPQPVLVKECELVKDVLNVL 360

Query: 130 FG 131
            G
Sbjct: 361 IG 362


>DP3A_VIBCH (P52022) DNA polymerase III alpha subunit (EC 2.7.7.7)
          Length = 1159

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 11  LLSSLVLSLFIPIFCSFEDVVDVDLVQFHLN----LEFLEAEFYFYGTL---GWGLDHAD 63
           ++S   ++ F PI+C  E   +  + QF  N       ++ +F    TL    W L   +
Sbjct: 516 VISPTAITDFAPIYCDAEG--NFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVN 573

Query: 64  PKLAQGGPPPVGGQYAYLDPILRDIFSQFAFQQAGHLRAITEEVKGFPRPLLNISKEAFA 123
           P+L + G PPV  +   LD    D  S    Q A        E +G    +  +  + F 
Sbjct: 574 PRLKKAGKPPVRIEAIPLD----DARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFE 629

Query: 124 EVI 126
           ++I
Sbjct: 630 DII 632


>SYFB_PYRFU (Q8U260) Phenylalanyl-tRNA synthetase beta chain (EC
           6.1.1.20) (Phenylalanine--tRNA ligase beta chain)
           (PheRS)
          Length = 556

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 42/195 (21%), Positives = 78/195 (39%), Gaps = 27/195 (13%)

Query: 55  LGWGLDHADPKLAQGGPPPVGGQYAYLDPILRDIFSQFAFQQAGHLRAITEEVKGFPRPL 114
           + +G ++ DP+  +      G  +   +  +RD+   F  Q+       ++EV+ F +  
Sbjct: 345 IAYGYNNIDPEEPKLAVQGRGDPFKDFEDAIRDLMVGFGLQEVMTFNLTSKEVQ-FDK-- 401

Query: 115 LNISKEAFAEVIN------SAFGKPLNPPFDPYANSLNYLLAAYMLPYVGLTGYVGTNPK 168
           +NI +E   E+ N      SA  K L P    + ++  +      +  VGL   +  + +
Sbjct: 402 MNIPEEEIVEIANPISSRWSALRKWLLPSLMEFLSNNTHEEYPQRIFEVGLATLIDESRE 461

Query: 169 LQGVRTRNLVSGLLG-------AKSGQDAMIRTLLYERRYLQVKPYQWTVYEVTHRLSLL 221
            + V    L   L G       AK   D+++R L  E          + + E  H  S +
Sbjct: 462 TKTVSEPKLAVALAGSGYTFTNAKEILDSLMRHLGIE----------YDIEETVHG-SFI 510

Query: 222 RNDLGKKQAEGKVVG 236
              +GK   +GK +G
Sbjct: 511 PGRVGKILVDGKEIG 525


>EAA3_HUMAN (P43005) Excitatory amino acid transporter 3
           (Sodium-dependent glutamate/aspartate transporter 3)
           (Excitatory amino-acid carrier 1) (Neuronal and
           epithelial glutamate transporter)
          Length = 524

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 31/104 (29%), Positives = 50/104 (47%), Gaps = 12/104 (11%)

Query: 69  GGPPPVGGQYAYLDPILRDIFS----QFAFQQAGHLRAITEEVKGFPRPLLNISKEAFAE 124
           G  P V    A LD ++R++F     Q  FQQ    R   EEVK    P +N+++E+F  
Sbjct: 131 GSTPEVSTVDAMLD-LIRNMFPENLVQACFQQYKTKR---EEVKPPSDPEMNMTEESFTA 186

Query: 125 VINSAFGKPLNPPF---DPYANSLNYL-LAAYMLPYVGLTGYVG 164
           V+ +A  K     +     Y++ +N L L  + L +  + G +G
Sbjct: 187 VMTTAISKNKTKEYKIVGMYSDGINVLGLIVFCLVFGLVIGKMG 230


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,093,220
Number of Sequences: 164201
Number of extensions: 1757114
Number of successful extensions: 3412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3407
Number of HSP's gapped (non-prelim): 10
length of query: 293
length of database: 59,974,054
effective HSP length: 109
effective length of query: 184
effective length of database: 42,076,145
effective search space: 7742010680
effective search space used: 7742010680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)