BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0331c.6
         (426 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MATK_RHOFR (O62984) Maturase K (Intron maturase)                       32  3.1
YER1_SCHPO (O14084) Hypothetical protein C2F3.01 in chromosome I...    31  5.3
NLPD_PSEAE (P45682) Lipoprotein nlpD/lppB homolog precursor            31  5.3
HTPX_THEVO (Q979X0) Probable protease htpX homolog (EC 3.4.24.-)       31  5.3
VAL3_PHUV (Q06925) AL3 protein                                         31  6.9

>MATK_RHOFR (O62984) Maturase K (Intron maturase)
          Length = 506

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 278 YNPFLYSPVYFNGRLYAVS---YSRLLVII---EKLEPPNGLQIHSADVYLPDPFPHTFP 331
           YN  LYS + F G    V    Y RLL  +   E+++  N   IHS   +L D F H   
Sbjct: 89  YNTNLYSQMIFEGFAVVVEIPFYLRLLSFLEGKERVKSHNLRSIHSIFPFLEDKFSHLVY 148

Query: 332 CLRQLLVCNHELFHIQI---SMEYNKIFGIAVHKLNF---SHMIWERVKSIKDMVFFLSD 385
            L  L+  +H + H++I   ++ Y      ++H L F    + IW  + + K   F  S 
Sbjct: 149 VLDILI--SHPI-HLEIVIQTLRYWVKDASSLHLLRFFLHEYPIWNSLITPKKSSFSFSI 205

Query: 386 KDLPF 390
           ++  F
Sbjct: 206 RNQRF 210


>YER1_SCHPO (O14084) Hypothetical protein C2F3.01 in chromosome I
           precursor
          Length = 319

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 26/78 (33%), Positives = 29/78 (36%), Gaps = 13/78 (16%)

Query: 195 NPFLQEKIH-LPSLKHE--NRIRNCILSCSPTETD-QVCSIFLFPHEA--------YGYG 242
           +PFL + IH L    H    +     LS  P     Q C   L PHE         YG G
Sbjct: 189 HPFLYQAIHNLSKFNHRYFTKYPTVFLSAGPLFLSYQFCKYLLTPHEPVRVLPALLYGNG 248

Query: 243 PNILFYCEVGDKQWFAVD 260
           PN  F    GD  W   D
Sbjct: 249 PNSFFSHVTGD-SWHGTD 265


>NLPD_PSEAE (P45682) Lipoprotein nlpD/lppB homolog precursor
          Length = 297

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 21/56 (37%), Positives = 26/56 (45%), Gaps = 6/56 (10%)

Query: 82  EVIARNLSVSV----TPVPKEQKMVV--DALAKLAVREGWDWKGQNKTECLLPPTT 131
           +V+ RN S       TPV   Q +V   D L  +A R GWDWK       + PP T
Sbjct: 47  KVVDRNGSAPAAARRTPVTSGQYIVRRGDTLYSIAFRFGWDWKALAARNGIAPPYT 102


>HTPX_THEVO (Q979X0) Probable protease htpX homolog (EC 3.4.24.-)
          Length = 308

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 5/149 (3%)

Query: 280 PFLYSPVYFNGRLYAVSYSRLLVIIEKLEPPNGLQ---IHSADVYLPDPFPHTFPCLRQL 336
           P++   VY   +     Y  ++ I+E++   NG++   ++ ++V  P+ F +  P   + 
Sbjct: 68  PYIVDMVYRAKKADPNRYGNIIAIVEEVAKLNGIRPPTLYISEVSFPNAFAYESPIAGRR 127

Query: 337 LVCNHELFHIQISMEYNKIFGIAV-HKLNFSHMIWERVKSIKDMVFFLSDKDLPFARRVN 395
           +     L  I    E   + G  + H  +    +   +  I  ++F+ +   L    R N
Sbjct: 128 IAITRPLLGILNEDELRAVIGHEIGHLKHHDSAVIMAIGLIPTLIFYFAYTTLFAGDRRN 187

Query: 396 PGGGGLIYFTSMNNKFV-HIFNLEDNSLR 423
            G   ++    M   F+ +I  L  N LR
Sbjct: 188 GGSAIILALVLMVVSFLFNIMVLSVNRLR 216


>VAL3_PHUV (Q06925) AL3 protein
          Length = 132

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 343 LFHIQISMEYNKIFGIAVHKLNFSHMIWERVKSIKDMVF 381
           +FHIQ+   +N    + +HK  F+  +W  + +I   ++
Sbjct: 44  VFHIQVRANHNMRTALGLHKAYFNFQVWTTLTTISGQIY 82


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,838,506
Number of Sequences: 164201
Number of extensions: 2508926
Number of successful extensions: 4851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4850
Number of HSP's gapped (non-prelim): 5
length of query: 426
length of database: 59,974,054
effective HSP length: 113
effective length of query: 313
effective length of database: 41,419,341
effective search space: 12964253733
effective search space used: 12964253733
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)