BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0331c.2
(1291 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 206 4e-52
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 202 5e-51
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 191 1e-47
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 189 3e-47
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 188 9e-47
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 175 6e-43
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 172 7e-42
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 172 7e-42
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 149 4e-35
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 132 5e-30
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 132 6e-30
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 130 2e-29
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 129 5e-29
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 127 2e-28
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 122 5e-27
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 114 2e-24
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 112 9e-24
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 95 1e-18
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 87 4e-16
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 86 9e-16
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 206 bits (523), Expect = 4e-52
Identities = 134/385 (34%), Positives = 201/385 (51%), Gaps = 10/385 (2%)
Query: 816 VQQEVDKLLAAEFIREVKYPTWLANVVIVKKANG----KWRMCVDYTDLNKACPKDSYPL 871
V+ ++ +L IR P V+ KK + K+R+ +DY LN+ D +P+
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282
Query: 872 PSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAG 931
P++D ++ + +D G HQI M P KTAF T +Y Y MPFGLKNA
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342
Query: 932 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCY 991
AT+QR M+ + + ++ VY+DD+IV S +H Q L F ++ K N++L +KC
Sbjct: 343 ATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCE 402
Query: 992 FGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDR 1051
F Q FLG ++T GI+ NPEK +AIQ+ P+ KE++ G +F+P D
Sbjct: 403 FLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADI 462
Query: 1052 SFPFFKCLRKNVAFEWT-AECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSS 1110
+ P KCL+KN+ + T E + AF +LK L+S PIL P L SD AL +
Sbjct: 463 AKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGA 522
Query: 1111 VMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTD-L 1169
V+ Q DG H + Y +S TL E+ Y IEK LA++ + R Y ++ +D
Sbjct: 523 VLSQ--DG-HPLSY-ISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQ 578
Query: 1170 PLRQVLQKPDLSGRLVAWSVELSEY 1194
PL + + D + +L W V+LSE+
Sbjct: 579 PLSWLYRMKDPNSKLTRWRVKLSEF 603
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 202 bits (514), Expect = 5e-51
Identities = 122/390 (31%), Positives = 204/390 (52%), Gaps = 9/390 (2%)
Query: 816 VQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPLPSID 875
+++ + K+L + IRE K P W + VV+VKK +G RMC+DY +NK +++PLP+I+
Sbjct: 958 IRKMIQKMLNQKVIRESKSP-WSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIE 1016
Query: 876 SLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGATYQ 935
+ + +G +L ++ D +G QI + ++ TAF + + +PFGL + A +Q
Sbjct: 1017 ATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQ 1076
Query: 936 RLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYFGVQ 995
M+ + +G VYVDD+++ S H QD++EA IRK M+L KC+ +
Sbjct: 1077 GTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKK 1136
Query: 996 GGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDRSFPF 1055
++LG +T G+E K ++Q P+NVKE+Q G + +F+ +
Sbjct: 1137 EVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
Query: 1056 FKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKP-----IQG-HPLHLYFAVSDGALS 1109
+ VA+ W E E AF LK+L+ P+L++P ++G P +Y S +
Sbjct: 1197 TSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIG 1256
Query: 1110 SVMLQE-IDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTD 1168
+V+ QE DG+ + F S L AE RY + ALA++ RR + + V TD
Sbjct: 1257 AVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTD 1316
Query: 1169 -LPLRQVLQKPDLSGRLVAWSVELSEYSLQ 1197
PL +L+ L+ RL WS+E+ E+ ++
Sbjct: 1317 HKPLISLLKGSPLADRLWRWSIEILEFDVK 1346
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 191 bits (484), Expect = 1e-47
Identities = 124/399 (31%), Positives = 203/399 (50%), Gaps = 17/399 (4%)
Query: 816 VQQEVDKLLAAEFIREVKYPTWLANVVIVKKA--NGK--WRMCVDYTDLNKACPKDSYPL 871
V++++D+LL IR P ++ KK NG+ +RM VD+ LN D+YP+
Sbjct: 139 VERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPI 198
Query: 872 PSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAG 931
P I++ + + + +D SG HQI M +D KTAF T Y + +PFGLKNA
Sbjct: 199 PDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAP 258
Query: 932 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCY 991
A +QR++D + +G+ VY+DD+IV S H ++L + K N+++N EK +
Sbjct: 259 AIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSH 318
Query: 992 FGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDR 1051
F +FLG+++T+ GI+ +P+K +AI +M P++VKE++R G + +F+
Sbjct: 319 FLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKV 378
Query: 1052 SFPFFKCLR-----------KNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLY 1100
+ P R V ++F LK +L S IL+ P P HL
Sbjct: 379 AKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLT 438
Query: 1101 FAVSDGALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPY-FQ 1159
S+ A+ +V+ Q+ G R + ++S +L E Y IEK LA++ + LR Y +
Sbjct: 439 TDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYG 498
Query: 1160 SFPVKVRTD-LPLRQVLQKPDLSGRLVAWSVELSEYSLQ 1197
+ +KV TD PL L + + +L W + EY+ +
Sbjct: 499 AGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCE 537
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 189 bits (481), Expect = 3e-47
Identities = 124/390 (31%), Positives = 190/390 (47%), Gaps = 10/390 (2%)
Query: 816 VQQEVDKLLAAEFIREVKYPTWLANVVIVKKANG----KWRMCVDYTDLNKACPKDSYPL 871
V+ +V ++L IRE P V+ KK + K+R+ +DY LN+ D YP+
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281
Query: 872 PSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAG 931
P++D ++ + + +D G HQI M KTAF T +Y Y MPFGL+NA
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341
Query: 932 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCY 991
AT+QR M+ + + ++ VY+DD+I+ S +H ++ F ++ N++L +KC
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCE 401
Query: 992 FGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDR 1051
F + FLG ++T GI+ NP K KAI P+ KE++ G +F+P D
Sbjct: 402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADI 461
Query: 1052 SFPFFKCLRKNVAFE-WTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSS 1110
+ P CL+K + E EAF +LK L+ PIL P L S+ AL +
Sbjct: 462 AKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGA 521
Query: 1111 VMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTD-L 1169
V+ Q + F+S TL E+ Y IEK LA++ + R Y + +D
Sbjct: 522 VLSQ----NGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQ 577
Query: 1170 PLRQVLQKPDLSGRLVAWSVELSEYSLQYD 1199
PLR + + +L W V LSEY + D
Sbjct: 578 PLRWLHNLKEPGAKLERWRVRLSEYQFKID 607
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 188 bits (477), Expect = 9e-47
Identities = 129/444 (29%), Positives = 207/444 (46%), Gaps = 11/444 (2%)
Query: 759 ETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGGDKGKAVQQ 818
+++L + E +D+FA + P N +L L +PV R + + +Q
Sbjct: 276 KSQLENICSEYIDIFALESE--PITVNNLYKQQLRLKDD-EPVYTKNYRSPHSQVEEIQA 332
Query: 819 EVDKLLAAEFIREVKYPTWLANVVIVKKANG------KWRMCVDYTDLNKACPKDSYPLP 872
+V KL+ + + E + + +++V K + KWR+ +DY +NK D +PLP
Sbjct: 333 QVQKLIKDKIV-EPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLP 391
Query: 873 SIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGA 932
ID ++D + S +D SG HQI + D T+F T+ +Y + +PFGLK A
Sbjct: 392 RIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPN 451
Query: 933 TYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYF 992
++QR+M F+G +Y+DD+IV ++L E FG+ R++N++L+PEKC F
Sbjct: 452 SFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSF 511
Query: 993 GVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDRS 1052
+ FLG T +GI + +K IQ P + +R RF+ D S
Sbjct: 512 FMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYS 571
Query: 1053 FPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSVM 1112
+ +KNV FEWT EC++AF+ LK L +P +L P + S A +V+
Sbjct: 572 RHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVL 631
Query: 1113 LQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTD-LPL 1171
Q +G V + S E E+ A+ RPY V+TD PL
Sbjct: 632 TQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPL 691
Query: 1172 RQVLQKPDLSGRLVAWSVELSEYS 1195
+ + S +L +EL EY+
Sbjct: 692 TYLFSMVNPSSKLTRIRLELEEYN 715
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 175 bits (444), Expect = 6e-43
Identities = 116/406 (28%), Positives = 202/406 (49%), Gaps = 8/406 (1%)
Query: 812 KGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPL 871
K +A+ E+++ L + IRE K V+ V K G RM VDY LNK + YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 872 PSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAG 931
P I+ L+ G+ + + +D S H IR+ DE K AF R + Y MP+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAP 542
Query: 932 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCY 991
A +Q ++ + ++ Y+DD+++ S +H + +++ +++ N+ +N KC
Sbjct: 543 AHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 992 FGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDR 1051
F KF+G+ I+ +G E + Q K P N KE+++ G + L +F+PK+
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 1052 SFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSV 1111
+ P L+K+V ++WT +A +K+ L SPP+L + L SD A+ +V
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAV 722
Query: 1112 MLQEIDGE-HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSF--PVKVRTD 1168
+ Q+ D + + V + S + A++ Y +K LA++ + + R Y +S P K+ TD
Sbjct: 723 LSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTD 782
Query: 1169 ---LPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLAD 1211
L R + + RL W + L +++ + + R A +AD
Sbjct: 783 HRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG-SANHIAD 827
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 172 bits (435), Expect = 7e-42
Identities = 115/406 (28%), Positives = 202/406 (49%), Gaps = 8/406 (1%)
Query: 812 KGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPL 871
K +A+ E+++ L + IRE K V+ V K G RM VDY LNK + YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 872 PSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAG 931
P I+ L+ G+ + + +D S H IR+ DE K AF R + Y MP+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 932 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCY 991
A +Q ++ + ++ Y+D++++ S +H + +++ +++ N+ +N KC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 992 FGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDR 1051
F KF+G+ I+ +G E + Q K P N KE+++ G + L +F+PK+
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 1052 SFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSV 1111
+ P L+K+V ++WT +A +K+ L SPP+L + L SD A+ +V
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAV 722
Query: 1112 MLQEIDGE-HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSF--PVKVRTD 1168
+ Q+ D + + V + S + A++ Y +K LA++ + + R Y +S P K+ TD
Sbjct: 723 LSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTD 782
Query: 1169 ---LPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLAD 1211
L R + + RL W + L +++ + + R A +AD
Sbjct: 783 HRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG-SANHIAD 827
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 172 bits (435), Expect = 7e-42
Identities = 115/406 (28%), Positives = 202/406 (49%), Gaps = 8/406 (1%)
Query: 812 KGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPL 871
K +A+ E+++ L + IRE K V+ V K G RM VDY LNK + YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 872 PSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAG 931
P I+ L+ G+ + + +D S H IR+ DE K AF R + Y MP+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 932 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCY 991
A +Q ++ + ++ Y+D++++ S +H + +++ +++ N+ +N KC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 992 FGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDR 1051
F KF+G+ I+ +G E + Q K P N KE+++ G + L +F+PK+
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 1052 SFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSV 1111
+ P L+K+V ++WT +A +K+ L SPP+L + L SD A+ +V
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAV 722
Query: 1112 MLQEIDGE-HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSF--PVKVRTD 1168
+ Q+ D + + V + S + A++ Y +K LA++ + + R Y +S P K+ TD
Sbjct: 723 LSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTD 782
Query: 1169 ---LPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLAD 1211
L R + + RL W + L +++ + + R A +AD
Sbjct: 783 HRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG-SANHIAD 827
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 149 bits (377), Expect = 4e-35
Identities = 110/399 (27%), Positives = 188/399 (46%), Gaps = 23/399 (5%)
Query: 816 VQQEVDKLLAAEFIREVKYPTWLANVVIVKKA-----NGKWRMCVDYTDLNKACPKDSYP 870
V EV +LL IR + P V+ KK N R+ +D+ LN+ D YP
Sbjct: 197 VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYP 256
Query: 871 LPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNA 930
+PSI ++ + + +D SG HQI + D +KT+F Y + +PFGL+NA
Sbjct: 257 MPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNA 316
Query: 931 GATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKC 990
+ +QR +D V Q+G+ VYVDD+I+ S DH + ++ + NMR++ EK
Sbjct: 317 SSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKT 376
Query: 991 YFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGD 1050
F + ++LGF+++ G + +PEK KAIQ+ P V +V+ G + F+
Sbjct: 377 RFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAA 436
Query: 1051 RSFPFFKCLR-----------KNVAFEWTAECEEAFVRLKELLSSPPILSK-PIQGHPLH 1098
+ P L+ K + E+ AF RL+ +L+S ++ K P P
Sbjct: 437 IARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFD 496
Query: 1099 LYFAVSDGALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPY- 1157
L S + +V+ Q E R + +S TL+ E Y E+ LA++ +L+ +
Sbjct: 497 LTTDASASGIGAVLSQ----EGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFL 552
Query: 1158 FQSFPVKVRTD-LPLRQVLQKPDLSGRLVAWSVELSEYS 1195
+ S + + TD PL + + + ++ W + +++
Sbjct: 553 YGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHN 591
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 132 bits (333), Expect = 5e-30
Identities = 125/484 (25%), Positives = 209/484 (42%), Gaps = 28/484 (5%)
Query: 734 PIEETKALKFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPN----FIC 789
P+EE L G R + +T+++ ++ +LL + C + P +DPN ++
Sbjct: 184 PLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEK-------VCSENP-LDPNKTKQWMK 235
Query: 790 HRLALNPSLKPVS*LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVI---VKK 846
+ L+ K + + + +++ +LL + I+ K P ++ +K
Sbjct: 236 ASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEK 295
Query: 847 ANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADE 906
GK RM V+Y +NKA D+Y LP+ D L+ G ++ S D SG Q+ +
Sbjct: 296 RRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESR 355
Query: 907 DKTAFMTARANYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNM-EVYVDDMIVKSVRGL 965
TAF + +Y + +PFGLK A + +QR MD F +V R VYVDD++V S
Sbjct: 356 PLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF--RVFRKFCCVYVDDILVFSNNEE 413
Query: 966 DHHQDLEEAFGEIRKHNMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSP 1025
DH + + +H + L+ +K + FLG I + + I +
Sbjct: 414 DHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDT 473
Query: 1026 -SNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSS 1084
+ K++QR G + S ++PK P L++NV + WT E ++K+ L
Sbjct: 474 LEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQG 533
Query: 1085 PPILSKPIQGHPLHLYFAVSD----GALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKI 1140
P L P+ L + SD G L ++ + E I + S + + AE Y
Sbjct: 534 FPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSN 593
Query: 1141 EKAALAVLVTARRLRPYFQSFPVKVRTD----LPLRQVLQKPDLS-GRLVAWSVELSEYS 1195
+K LAV+ T ++ Y +RTD + K D GR + W LS YS
Sbjct: 594 DKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYS 653
Query: 1196 LQYD 1199
+
Sbjct: 654 FDVE 657
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 132 bits (332), Expect = 6e-30
Identities = 125/484 (25%), Positives = 210/484 (42%), Gaps = 28/484 (5%)
Query: 734 PIEETKALKFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPN----FIC 789
P+EE L G R + +T+++ ++ +LL + C + P +DPN ++
Sbjct: 184 PLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEK-------VCSENP-LDPNKTKQWMK 235
Query: 790 HRLALNPSLKPVS*LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVI---VKK 846
+ L+ K + + + +++ +LL + I+ K P ++ +K
Sbjct: 236 ASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEK 295
Query: 847 ANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADE 906
GK RM V+Y +NKA D+Y LP+ D L+ G ++ S D SG Q+ +
Sbjct: 296 RRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESR 355
Query: 907 DKTAFMTARANYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNM-EVYVDDMIVKSVRGL 965
TAF + +Y + +PFGLK A + +QR MD F +V R VYVDD++V S
Sbjct: 356 PLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF--RVFRKFCCVYVDDILVFSNNEE 413
Query: 966 DHHQDLEEAFGEIRKHNMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSP 1025
DH + + +H + L+ +K + FLG I + + I +
Sbjct: 414 DHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDT 473
Query: 1026 -SNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSS 1084
+ K++QR G + S ++PK P L++NV ++WT E ++K+ L
Sbjct: 474 LEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQG 533
Query: 1085 PPILSKPIQGHPLHLYFAVSD----GALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKI 1140
P L P+ L + SD G L ++ + E I + S + + AE Y
Sbjct: 534 FPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSN 593
Query: 1141 EKAALAVLVTARRLRPYFQSFPVKVRTD----LPLRQVLQKPDLS-GRLVAWSVELSEYS 1195
+K LAV+ T ++ Y +RTD + K D GR + W LS YS
Sbjct: 594 DKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYS 653
Query: 1196 LQYD 1199
+
Sbjct: 654 FDVE 657
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 130 bits (328), Expect = 2e-29
Identities = 123/470 (26%), Positives = 204/470 (43%), Gaps = 21/470 (4%)
Query: 748 LKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPN----FICHRLALNPSLKPVS* 803
L G RL+EE+ + + + +L C + P +DPN ++ + L+ K +
Sbjct: 191 LSEGRRLSEEKLFITQQRMQKIEELLEKVCSENP-LDPNKTKQWMKASIKLSDPSKAIKV 249
Query: 804 LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVI---VKKANGKWRMCVDYTDL 860
+ + +++ +LL + I+ K P ++ +K GK RM V+Y +
Sbjct: 250 KPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAM 309
Query: 861 NKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCY 920
NKA D+Y LP+ D L+ G ++ S D SG Q+ + TAF + +Y +
Sbjct: 310 NKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEW 369
Query: 921 RTMPFGLKNAGATYQRLMDRVFAGQVGRNM-EVYVDDMIVKSVRGLDHHQDLEEAFGEIR 979
+PFGLK A + +QR MD F +V R VYVDD++V S DH + +
Sbjct: 370 NVVPFGLKQAPSIFQRHMDEAF--RVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCN 427
Query: 980 KHNMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSP-SNVKEVQRLTGRI 1038
+H + L+ +K + FLG I + + I + + K++QR G +
Sbjct: 428 QHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGIL 487
Query: 1039 AALSRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLH 1098
S ++PK P L++NV ++WT E ++K+ L P L P+ L
Sbjct: 488 TYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLI 547
Query: 1099 LYFAVSD----GALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRL 1154
+ SD G L ++ + E I + S + + AE Y +K LAV+ T ++
Sbjct: 548 IETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKF 607
Query: 1155 RPYFQSFPVKVRTD----LPLRQVLQKPDLS-GRLVAWSVELSEYSLQYD 1199
Y +RTD + K D GR + W LS YS +
Sbjct: 608 SIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVE 657
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 129 bits (324), Expect = 5e-29
Identities = 127/499 (25%), Positives = 212/499 (42%), Gaps = 26/499 (5%)
Query: 719 ENLDPRGEGRVNRPTPIEETKALKFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCK 778
E++ R + + P I K L G RL+EE+ + + + +L C
Sbjct: 162 ESMKKRSKTQQPEPVNISTNKIA-----ILSEGRRLSEEKLFITQQRMQKIEELLEKVCS 216
Query: 779 DMPGIDPN----FICHRLALNPSLKPVS*LRRRLGGDKGKAVQQEVDKLLAAEFIREVKY 834
+ P +DPN ++ + L+ K + + + +++ +LL + I+ K
Sbjct: 217 ENP-LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS 275
Query: 835 PTWLANVVI---VKKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMD 891
P ++ +K GK RM V+Y +NKA D+Y P+ D L+ G ++ S D
Sbjct: 276 PHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFD 335
Query: 892 AYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNM- 950
SG Q+ + TAF + +Y + +PFGLK A + +QR MD F +V R
Sbjct: 336 CKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF--RVFRKFC 393
Query: 951 EVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYFGVQGGKFLGFMITSRGIE 1010
VYVDD++V S DH + + +H + L+ +K + FLG I +
Sbjct: 394 CVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHK 453
Query: 1011 INPEKCKAIQQMKSP-SNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLRKNVAFEWTA 1069
+ I + + K++QR G + S ++PK P L++NV ++WT
Sbjct: 454 PQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTK 513
Query: 1070 ECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSD----GALSSVMLQEIDGEHRIVYF 1125
E ++K+ L P L P+ L + SD G L ++ + E I +
Sbjct: 514 EDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRY 573
Query: 1126 VSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTD----LPLRQVLQKPDLS 1181
S + + AE Y +K LAV+ T ++ Y +RTD + K D
Sbjct: 574 ASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 633
Query: 1182 -GRLVAWSVELSEYSLQYD 1199
GR + W LS YS +
Sbjct: 634 LGRNIRWQAWLSHYSFDVE 652
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 127 bits (319), Expect = 2e-28
Identities = 121/470 (25%), Positives = 202/470 (42%), Gaps = 21/470 (4%)
Query: 748 LKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPN----FICHRLALNPSLKPVS* 803
L G RL+EE+ + + + +L C + P +DPN ++ + L+ K +
Sbjct: 192 LSEGRRLSEEKLFITQQRMQKTEELLEKVCSENP-LDPNKTKQWMKASIKLSDPSKAIKV 250
Query: 804 LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKAN---GKWRMCVDYTDL 860
+ + +++ +LL + I+ K P ++ +A G RM V+Y +
Sbjct: 251 KPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAM 310
Query: 861 NKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCY 920
NKA D+Y LP+ D L+ G ++ S D SG Q+ + TAF + +Y +
Sbjct: 311 NKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEW 370
Query: 921 RTMPFGLKNAGATYQRLMDRVFAGQVGRNM-EVYVDDMIVKSVRGLDHHQDLEEAFGEIR 979
+PFGLK A + +QR MD F +V R VYVDD++V S DH + +
Sbjct: 371 NVVPFGLKQAPSIFQRHMDEAF--RVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCN 428
Query: 980 KHNMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSP-SNVKEVQRLTGRI 1038
+H + L+ +K + FLG I + + I + + K++QR G +
Sbjct: 429 QHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGIL 488
Query: 1039 AALSRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLH 1098
S ++P P L++NV ++WT E ++K+ L P L P+ L
Sbjct: 489 TYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLI 548
Query: 1099 LYFAVSD----GALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRL 1154
+ SD G L ++ + E I + S + + AE Y +K LAV+ T ++
Sbjct: 549 IETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKF 608
Query: 1155 RPYFQSFPVKVRTD----LPLRQVLQKPDLS-GRLVAWSVELSEYSLQYD 1199
Y +RTD + K D GR + W LS YS +
Sbjct: 609 SIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVE 658
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 122 bits (307), Expect = 5e-27
Identities = 108/377 (28%), Positives = 168/377 (43%), Gaps = 15/377 (3%)
Query: 845 KKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPA 904
++ GK RM V+Y +N+A DS+ LP++ L+ G + S D SG Q+ +
Sbjct: 287 ERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEE 346
Query: 905 DEDKTAFMTARANYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRG 964
+ TAF + ++ ++ +PFGLK A + +QR M G + VYVDD+IV S
Sbjct: 347 SQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSNSE 405
Query: 965 LDHHQDLEEAFGEIRKHNMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKS 1024
LDH+ + + K+ + L+ +K + FLG I +G P+ K
Sbjct: 406 LDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEI-DKGTHC-PQNHILENIHKF 463
Query: 1025 PSNV---KEVQRLTGRIAALSRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKEL 1081
P + K +QR G + ++PK + P L+K+V + WT + ++K+
Sbjct: 464 PDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKN 523
Query: 1082 LSSPPILSKPIQGHPLHLYFAVSDGALSSVM-LQEIDGEHRIVYFVSHTLQGAEVRYQKI 1140
L S P L P L + SD V+ + +DG I + S + + AE Y
Sbjct: 524 LGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSN 583
Query: 1141 EKAALAVLVTARRLRPYFQSFPVKVRTDLP-----LRQVLQKPDLSGRLVAWSVELSEYS 1195
+K LAV + Y VRTD LR L+ GRLV W S+Y
Sbjct: 584 DKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQNWFSKY- 642
Query: 1196 LQYDKRGAVGAQS-LAD 1211
Q+D G ++ LAD
Sbjct: 643 -QFDVEHLEGVKNVLAD 658
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 114 bits (285), Expect = 2e-24
Identities = 73/237 (30%), Positives = 125/237 (51%), Gaps = 11/237 (4%)
Query: 814 KAVQQEVDKLLAAEFIREVKYPTWLANVVIVKK-ANGKWRMCVDY--TDLNKACPKDSYP 870
+AV+ E+++L I + Y W A +V++KK GK R+C D+ + LN A + +P
Sbjct: 454 EAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEFHP 513
Query: 871 LPSIDSLVDGASGN--ELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLK 928
LP+ + + G + L DAY Q+ + + T R + Y M FGLK
Sbjct: 514 LPTSEDIFSRLKGTVYSQIDLKDAYL---QVELDEEAQKLAVINTHRGIFKYLRMTFGLK 570
Query: 929 NAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPE 988
A A++Q++MD++ +G G + VY DD+I+ + +H + L E F +++ R++ E
Sbjct: 571 PAPASFQKIMDKMVSGLTG--VAVYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAE 628
Query: 989 KCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFL 1045
KC F + FLGF + G + +K +AI+ MK+P++ K++ G LSR +
Sbjct: 629 KCAFAQKQVTFLGF-VDEHGRRPDSKKTEAIRSMKAPTDQKQLASFLGAADWLSRMM 684
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 112 bits (279), Expect = 9e-24
Identities = 132/545 (24%), Positives = 228/545 (41%), Gaps = 46/545 (8%)
Query: 702 KKSALVGH--RCYEIEASDENLDPRGEGRVNRPTPIEET--KALKFGDRTLKIGTRLTEE 757
K+S ++G + Y+ + + +VNRP PI T + L + + L E
Sbjct: 127 KQSVIIGKITKAYQYGVKGFLESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDEMLYEI 186
Query: 758 Q-------ETRLTKLLGEN-LD---LFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRR 806
Q E L ++ EN +D W + IDP + +KP+S
Sbjct: 187 QISKFSAIEEMLERVSSENPIDPEKSKQWMTATIELIDPKTVV-------KVKPMS---- 235
Query: 807 RLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVK----KANGKWRMCVDYTDLNK 862
+ +++ +LL + I+ K T ++ +V+ + GK RM V+Y +NK
Sbjct: 236 -YSPSDREEFDRQIKELLELKVIKPSK-STHMSPAFLVENEAERRRGKKRMVVNYKAMNK 293
Query: 863 ACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRT 922
A D++ LP+ D L+ G ++ S D SG Q+ + + TAF + +Y +
Sbjct: 294 ATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNV 353
Query: 923 MPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRG-LDHHQDLEEAFGEIRKH 981
+PFGLK A + + + + Q + VYVDD++V S G +H+ + K
Sbjct: 354 VPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKL 413
Query: 982 NMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNV---KEVQRLTGRI 1038
+ L+ +K + FLG I +G P+ K P + K++QR G +
Sbjct: 414 GIILSKKKAQLFKEKINFLGLEI-DQGTHC-PQNHILEHIHKFPDRIEDKKQLQRFLGIL 471
Query: 1039 AALSRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLH 1098
S ++PK P L+++ + W + ++K+ L S P L P L
Sbjct: 472 TYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLV 531
Query: 1099 LYFAVSDGALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYF 1158
+ S+ ++ + I + S + + AE Y EK LAV+ ++ Y
Sbjct: 532 IETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYL 591
Query: 1159 QSFPVKVRTDLP-----LRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSL-ADF 1212
+RTD + L+ GRLV W + LS+Y +D G +++ ADF
Sbjct: 592 TPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQY--DFDVEHIAGTKNVFADF 649
Query: 1213 VVELT 1217
+ E T
Sbjct: 650 LQENT 654
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 94.7 bits (234), Expect = 1e-18
Identities = 69/235 (29%), Positives = 111/235 (46%), Gaps = 11/235 (4%)
Query: 789 CHRLALNPSLKPVS*LRRRLGGDKGKAVQQEVDKLLAAEFIR--EVKYPTWLANV----- 841
C +NP +K + + + +A+ ++++ LL + IR E K+ + V
Sbjct: 1391 CKLNIINPDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTE 1450
Query: 842 ---VIVKKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQ 898
+ K+ GK RM +Y LN+ D Y LP I++++ +++ S D SG Q
Sbjct: 1451 IDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQ 1510
Query: 899 IRMHPADEDKTAFMTARANYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMI 958
+ M TAF+ Y + MPFGLKNA A +QR MD VF G + + VY+DD++
Sbjct: 1511 VAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDIL 1569
Query: 959 VKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYFGVQGGKFLGFMITSRGIEINP 1013
V S H Q L +++ + L+P K G FLG + I++ P
Sbjct: 1570 VFSETAEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQP 1624
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 692
Score = 86.7 bits (213), Expect = 4e-16
Identities = 68/230 (29%), Positives = 115/230 (49%), Gaps = 10/230 (4%)
Query: 817 QQEVDKLLAAEFIREVKYPTWLANVVIVKKAN----GKWRMCVDYTDLNKACPKDSYPLP 872
++E + LL IRE + P A V+ N GK RM ++Y +N+A DSY LP
Sbjct: 220 KEECEDLLKKGLIRESQSPH-SAPAFYVENHNEIKRGKRRMVINYKKMNEATIGDSYKLP 278
Query: 873 SIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAF-MTARANYCYRTMPFGLKNAG 931
D +++ G+ S +DA SG +Q+R+H + TAF + +Y + + FGLK A
Sbjct: 279 RKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLSFGLKQAP 338
Query: 932 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHH-QDLEEAFGEIRKHNMRLNPEKC 990
+ YQR MD+ G + Y+DD+++ + + H D+ I++ + ++ +K
Sbjct: 339 SIYQRFMDQSLKG-LEHICLAYIDDILIFTKGSKEQHVNDVRIVLQRIKEKGIIISKKKS 397
Query: 991 YFGVQGGKFLGFMITSRG-IEINPEKCKAIQQMKSP-SNVKEVQRLTGRI 1038
Q ++LG I G I+++P + I Q + K++QR G I
Sbjct: 398 KLIQQEIEYLGLKIQGNGEIDLSPHTQEKILQFPDELEDRKQIQRFLGCI 447
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 85.5 bits (210), Expect = 9e-16
Identities = 43/121 (35%), Positives = 68/121 (55%)
Query: 852 RMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAF 911
RMC+DY L K K+ YP+P +D L D + + +D SG Q+R+ DE KT
Sbjct: 7 RMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTC 66
Query: 912 MTARANYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDL 971
+T ++ +R MPFGL NA AT+ LM+ V + + VY+DD++V ++ H+ +
Sbjct: 67 VTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHI 126
Query: 972 E 972
+
Sbjct: 127 K 127
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,485,843
Number of Sequences: 164201
Number of extensions: 7202799
Number of successful extensions: 49959
Number of sequences better than 10.0: 703
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 460
Number of HSP's that attempted gapping in prelim test: 37798
Number of HSP's gapped (non-prelim): 5047
length of query: 1291
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1169
effective length of database: 39,941,532
effective search space: 46691650908
effective search space used: 46691650908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0331c.2