BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0320b.4
(161 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ARRH_ARATH (Q9FPR6) Two-component response regulator ARR17 201 6e-52
ARRG_ARATH (Q9SHC2) Two-component response regulator ARR16 189 3e-48
ARR4_ARATH (O82798) Two-component response regulator ARR4 (Respo... 172 4e-43
ARR3_ARATH (Q9ZWS9) Two-component response regulator ARR3 170 1e-42
ARR9_ARATH (O80366) Two-component response regulator ARR9 (Respo... 168 4e-42
ARR8_ARATH (O80365) Two-component response regulator ARR8 (Respo... 166 2e-41
ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7 165 5e-41
ARR6_ARATH (Q9ZWS6) Two-component response regulator ARR6 164 8e-41
ARR5_ARATH (Q9SB04) Two-component response regulator ARR5 (Respo... 164 1e-40
ARRF_ARATH (Q7G8V2) Two-component response regulator ARR15 162 3e-40
PRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7 ... 71 9e-13
REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase re... 70 2e-12
PRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3 ... 70 2e-12
PRR9_ARATH (Q8L500) Two-component response regulator-like APRR9 ... 69 6e-12
PRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5 ... 68 8e-12
ARRC_ARATH (P62598) Two-component response regulator ARR12 66 4e-11
ARRL_ARATH (Q9LYP5) Putative two-component response regulator ARR21 63 3e-10
ARRA_ARATH (O49397) Two-component response regulator ARR10 (Rece... 61 1e-09
CHEY_HELPY (P71403) Chemotaxis protein cheY homolog 60 2e-09
RPFC_XANCP (P49246) Sensory/regulatory protein rpfC (EC 2.7.3.-) 59 4e-09
>ARRH_ARATH (Q9FPR6) Two-component response regulator ARR17
Length = 153
Score = 201 bits (511), Expect = 6e-52
Identities = 104/148 (70%), Positives = 121/148 (81%), Gaps = 1/148 (0%)
Query: 5 GSSSSNWVMESGDIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGE 64
GS S + + + HVLAVDDNLIDRKLVE++L+ SSCKVTTAENG RALE+LGL +
Sbjct: 6 GSGSDSCLSSMEEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQ 65
Query: 65 Q-NTLNGRSKVNLIITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLE 123
Q ++L KVNLIITDYCMPGMTG+ELLKK+KESS +KEVPVVI+SSENIPTRINKCL
Sbjct: 66 QTDSLTNVMKVNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLA 125
Query: 124 EGAQMFILKPLKQSDIKKLKCKLSNCSS 151
GAQMF+ KPLK SD++KLKC L NC S
Sbjct: 126 SGAQMFMQKPLKLSDVEKLKCHLLNCRS 153
>ARRG_ARATH (Q9SHC2) Two-component response regulator ARR16
Length = 164
Score = 189 bits (479), Expect = 3e-48
Identities = 101/138 (73%), Positives = 114/138 (82%), Gaps = 9/138 (6%)
Query: 20 HVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQN------TLNGRSK 73
HVLAVDDNLIDRKLVE+LL+ S CKVTTAEN RALE+LGL G+QN T N K
Sbjct: 30 HVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGL--GDQNQHIDALTCNVM-K 86
Query: 74 VNLIITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKP 133
V+LIITDYCMPGMTG+ELLKK+KESS ++EVPVVIMSSENIPTRINKCL GAQMF+ KP
Sbjct: 87 VSLIITDYCMPGMTGFELLKKVKESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKP 146
Query: 134 LKQSDIKKLKCKLSNCSS 151
LK +D++KLKC L NC S
Sbjct: 147 LKLADVEKLKCHLMNCRS 164
>ARR4_ARATH (O82798) Two-component response regulator ARR4 (Response
regulator 1)
Length = 259
Score = 172 bits (435), Expect = 4e-43
Identities = 88/139 (63%), Positives = 111/139 (79%)
Query: 17 DIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNL 76
D HVLAVDD+L+DR ++E+LLR +SCKVT ++G RALEFLGL + + + R KV+L
Sbjct: 32 DEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFDRLKVDL 91
Query: 77 IITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQ 136
IITDYCMPGMTGYELLKKIKESS +EVPVVIMSSEN+ TRI++CLEEGAQ F+LKP+K
Sbjct: 92 IITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKL 151
Query: 137 SDIKKLKCKLSNCSSLGVG 155
+D+K+L+ L+ L G
Sbjct: 152 ADVKRLRSHLTKDVKLSNG 170
>ARR3_ARATH (Q9ZWS9) Two-component response regulator ARR3
Length = 231
Score = 170 bits (430), Expect = 1e-42
Identities = 85/131 (64%), Positives = 108/131 (81%)
Query: 17 DIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNL 76
D HVLAVDD+L+DR ++E+LLR +SCKVT ++G RALEFLGL + R KV+L
Sbjct: 31 DQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDL 90
Query: 77 IITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQ 136
IITDYCMPGMTGYELLKKIKES++ KEVPVVIMSSEN+ TRI++CLEEGA+ F+LKP+K
Sbjct: 91 IITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKL 150
Query: 137 SDIKKLKCKLS 147
+D+K+L+ L+
Sbjct: 151 ADVKRLRSYLT 161
>ARR9_ARATH (O80366) Two-component response regulator ARR9 (Response
reactor 4)
Length = 234
Score = 168 bits (426), Expect = 4e-42
Identities = 85/134 (63%), Positives = 107/134 (79%), Gaps = 10/134 (7%)
Query: 20 HVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLT-SGEQNTLNGRSK----- 73
HVLAVDD+L DRKL+E+LL+ SSC+VTT ++G +ALEFLGL S + N N SK
Sbjct: 10 HVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPVNH 69
Query: 74 ----VNLIITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMF 129
VNLIITDYCMPGMTGY+LLKK+KESSA +++PVVIMSSEN+P RI++CLEEGA+ F
Sbjct: 70 QVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEF 129
Query: 130 ILKPLKQSDIKKLK 143
LKP++ +D+ KLK
Sbjct: 130 FLKPVRLADLNKLK 143
>ARR8_ARATH (O80365) Two-component response regulator ARR8 (Response
reactor 3)
Length = 225
Score = 166 bits (420), Expect = 2e-41
Identities = 81/140 (57%), Positives = 109/140 (77%), Gaps = 8/140 (5%)
Query: 12 VMESGDIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNT---- 67
VME+ HVLAVDD+L DRK++E+LL+ SSC+VTT ++G +ALEFLGL + +
Sbjct: 2 VMETESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALS 61
Query: 68 ----LNGRSKVNLIITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLE 123
++ ++NLIITDYCMPGMTGY+LLKK+KES+A + +PVVIMSSEN+P RI++CLE
Sbjct: 62 TSPQIHQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLE 121
Query: 124 EGAQMFILKPLKQSDIKKLK 143
EGA+ F LKP+K +D+ KLK
Sbjct: 122 EGAEEFFLKPVKLADLTKLK 141
>ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7
Length = 206
Score = 165 bits (417), Expect = 5e-41
Identities = 80/124 (64%), Positives = 105/124 (84%)
Query: 20 HVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIIT 79
HVLAVDD+++DRK++E+LLR SSCKVTT E+G RAL++LGL G+ + KVNLI+T
Sbjct: 25 HVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKDLKVNLIVT 84
Query: 80 DYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDI 139
DY MPG++GY+LLKKIKESSA +EVPVVIMSSENI RI +CL+EGA+ F+LKP+K +D+
Sbjct: 85 DYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLADV 144
Query: 140 KKLK 143
K++K
Sbjct: 145 KRIK 148
>ARR6_ARATH (Q9ZWS6) Two-component response regulator ARR6
Length = 186
Score = 164 bits (415), Expect = 8e-41
Identities = 86/138 (62%), Positives = 106/138 (76%)
Query: 15 SGDIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKV 74
S D HVLAVDD+ +DRK +E+LLR SSCKVT ++ RAL++LGL E++ KV
Sbjct: 21 SPDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKV 80
Query: 75 NLIITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPL 134
NLI+TDY MPGMTGYELLKKIKESSA +EVPVVIMSSENI RI++CLEEGA+ F+LKP+
Sbjct: 81 NLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPV 140
Query: 135 KQSDIKKLKCKLSNCSSL 152
K SD+K+L+ L L
Sbjct: 141 KLSDVKRLRDSLMKVEDL 158
>ARR5_ARATH (Q9SB04) Two-component response regulator ARR5 (Response
reactor 2)
Length = 184
Score = 164 bits (414), Expect = 1e-40
Identities = 84/136 (61%), Positives = 109/136 (79%), Gaps = 3/136 (2%)
Query: 13 MESGDIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRS 72
+ S + HVLAVDD+++DRK +E+LLR SSCKVT ++ RAL++LGL GE N+ G
Sbjct: 19 LASPKLLHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGL-DGENNSSVGFE 77
Query: 73 --KVNLIITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFI 130
K+NLI+TDY MPGMTGYELLKKIKESSA +E+PVVIMSSENI RI++CLEEGA+ F+
Sbjct: 78 DLKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFL 137
Query: 131 LKPLKQSDIKKLKCKL 146
LKP+K +D+K+L+ L
Sbjct: 138 LKPVKLADVKRLRDSL 153
>ARRF_ARATH (Q7G8V2) Two-component response regulator ARR15
Length = 206
Score = 162 bits (410), Expect = 3e-40
Identities = 81/136 (59%), Positives = 107/136 (78%)
Query: 8 SSNWVMESGDIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNT 67
SS+ S HVLAVDD+ +DRK++E+LL+ S+CKVTT E+G RAL++LGL ++
Sbjct: 7 SSSLSSSSSPELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSS 66
Query: 68 LNGRSKVNLIITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQ 127
KVNLI+TDY MPG+TGYELLKKIKESSA++E+PVVIMSSENI RI +C+ EGA+
Sbjct: 67 GLKDLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAE 126
Query: 128 MFILKPLKQSDIKKLK 143
F+LKP+K +D+K+LK
Sbjct: 127 EFLLKPVKLADVKRLK 142
>PRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7
(Pseudo-response regulator 7)
Length = 727
Score = 71.2 bits (173), Expect = 9e-13
Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 21 VLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITD 80
VL V+++ R +V LLRN S +V A NG +A + L LN +++++T+
Sbjct: 80 VLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVL-------EDLNNH--IDIVLTE 130
Query: 81 YCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDIK 140
MP ++G LL KI + + +PV++MSS + + KCL +GA F++KP++++++K
Sbjct: 131 VIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELK 190
Query: 141 KL------KCKLSNCSSLGVGMH 157
L +C+ S+ S G H
Sbjct: 191 ILWQHVWRRCQSSSGSGSESGTH 213
>REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase regA
(EC 3.1.4.17) (PDEase regA)
Length = 793
Score = 70.5 bits (171), Expect = 2e-12
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 10/122 (8%)
Query: 21 VLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITD 80
+L DD+ + RK++ LL+ VT NG A E++ G+ K +L++TD
Sbjct: 162 ILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYIN---------KGQQKYDLVLTD 212
Query: 81 YCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTR-INKCLEEGAQMFILKPLKQSDI 139
MP +TG++LL++I + + +PV++MS + + N ++ G Q F+ KP+ + +
Sbjct: 213 VMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPIAKELL 272
Query: 140 KK 141
KK
Sbjct: 273 KK 274
>PRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3
(Pseudo-response regulator 3)
Length = 495
Score = 70.5 bits (171), Expect = 2e-12
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 15/143 (10%)
Query: 21 VLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITD 80
VL V+++ R +V LL+N S +VT P LE + E +S ++L++T+
Sbjct: 66 VLLVENDDSTRHIVTALLKNCSYEVTAV---PDVLEAWRILEDE------KSCIDLVLTE 116
Query: 81 YCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDIK 140
MP +G LL KI +K +PV++MSS + + KCL GA F++KP++++++K
Sbjct: 117 VDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELK 176
Query: 141 KL------KCKLSNCSSLGVGMH 157
L +C S+ S G+H
Sbjct: 177 NLWQHVWRRCHSSSGSGSESGIH 199
>PRR9_ARATH (Q8L500) Two-component response regulator-like APRR9
(Pseudo-response regulator 9)
Length = 468
Score = 68.6 bits (166), Expect = 6e-12
Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 21 VLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITD 80
VL V+ + R+++ LLR KV +G A E L S ++LI+T+
Sbjct: 39 VLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKS---------HNIDLILTE 89
Query: 81 YCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDIK 140
+P ++G+ LL + E A K +PV++MSS++ + KC+ GA +++KP++++++K
Sbjct: 90 LDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELK 149
Query: 141 KL 142
L
Sbjct: 150 NL 151
>PRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5
(Pseudo-response regulator 5)
Length = 558
Score = 68.2 bits (165), Expect = 8e-12
Identities = 38/122 (31%), Positives = 72/122 (58%), Gaps = 9/122 (7%)
Query: 21 VLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITD 80
VL V+ + R+++ LLR S +V +G +A E L G+ + V+LI+T+
Sbjct: 52 VLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEML---KGKPES------VDLILTE 102
Query: 81 YCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDIK 140
+P ++GY LL I E K +PV++MS+++ + KC+ +GA +++KPL++++++
Sbjct: 103 VDLPSISGYALLTLIMEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELR 162
Query: 141 KL 142
L
Sbjct: 163 NL 164
>ARRC_ARATH (P62598) Two-component response regulator ARR12
Length = 596
Score = 65.9 bits (159), Expect = 4e-11
Identities = 39/122 (31%), Positives = 69/122 (55%), Gaps = 12/122 (9%)
Query: 21 VLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITD 80
VLAVDD+ K++E LLR+ VTT +ALE L ++K +L+I+D
Sbjct: 19 VLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELL---------RENKNKFDLVISD 69
Query: 81 YCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDIK 140
MP M G++LL+ + ++PV+++S+ + P + K + GA ++LKP++ ++K
Sbjct: 70 VDMPDMDGFKLLELV---GLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELK 126
Query: 141 KL 142
+
Sbjct: 127 NI 128
>ARRL_ARATH (Q9LYP5) Putative two-component response regulator ARR21
Length = 592
Score = 63.2 bits (152), Expect = 3e-10
Identities = 39/123 (31%), Positives = 69/123 (55%), Gaps = 13/123 (10%)
Query: 20 HVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIIT 79
+V+ VDD+ + ++ ++L++S +V ++ +AL L + R ++LIIT
Sbjct: 17 NVMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKALSTLKIQ---------RDNIDLIIT 67
Query: 80 DYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDI 139
DY MPGM G +L K+I + +PV++MSS+ + + L GA FI KP+ +D+
Sbjct: 68 DYYMPGMNGLQLKKQITQE--FGNLPVLVMSSDT--NKEEESLSCGAMGFIPKPIHPTDL 123
Query: 140 KKL 142
K+
Sbjct: 124 TKI 126
>ARRA_ARATH (O49397) Two-component response regulator ARR10
(Receiver-like protein 4)
Length = 552
Score = 60.8 bits (146), Expect = 1e-09
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 12/122 (9%)
Query: 21 VLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITD 80
VLAVDD+ ++++ LL+ VTT ALE L ++K +L+I+D
Sbjct: 19 VLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLR---------ENKNKFDLVISD 69
Query: 81 YCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDIK 140
MP M G++LL+ + ++PV+++S+ + P + K ++ GA ++LKP++ ++K
Sbjct: 70 VDMPDMDGFKLLELV---GLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELK 126
Query: 141 KL 142
+
Sbjct: 127 NI 128
>CHEY_HELPY (P71403) Chemotaxis protein cheY homolog
Length = 124
Score = 60.1 bits (144), Expect = 2e-09
Identities = 34/122 (27%), Positives = 64/122 (51%), Gaps = 11/122 (9%)
Query: 21 VLAVDDNLIDRKLVEKLLRNSSCK-VTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIIT 79
+L VDD+ R++++ L + V AE+G A E L+ + ++IT
Sbjct: 3 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWE----------KLDANADTKVLIT 52
Query: 80 DYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDI 139
D+ MP M G +L+KK++ S KE+P++++++E + L+ G +I+KP +
Sbjct: 53 DWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVL 112
Query: 140 KK 141
K+
Sbjct: 113 KE 114
>RPFC_XANCP (P49246) Sensory/regulatory protein rpfC (EC 2.7.3.-)
Length = 677
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 21 VLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITD 80
+L DD+ +R ++++LL + KV + L+ + + +I D
Sbjct: 415 MLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-----------EEDYDAVIVD 463
Query: 81 YCMPGMTGYELLKKIK--ESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPL 134
MPGM G ++LK+++ ++S M+ PVV++S++ P I C + GA+ F+ KP+
Sbjct: 464 LHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 519
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,613,530
Number of Sequences: 164201
Number of extensions: 633688
Number of successful extensions: 2107
Number of sequences better than 10.0: 236
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 1896
Number of HSP's gapped (non-prelim): 243
length of query: 161
length of database: 59,974,054
effective HSP length: 101
effective length of query: 60
effective length of database: 43,389,753
effective search space: 2603385180
effective search space used: 2603385180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0320b.4