BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0314.20
         (396 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

FBW5_MOUSE (Q9QXW2) F-box/WD-repeat protein 5 (F-box and WD-40 d...    35  0.26
POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding ...    33  1.3
PHZC_PSECL (Q51517) Probable phospho-2-dehydro-3-deoxyheptonate ...    33  1.7
FX11_RAT (Q7TSL3) F-box only protein 11                                33  1.7
FX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated p...    33  1.7
FBW5_HUMAN (Q969U6) F-box/WD-repeat protein 5 (F-box and WD-40 d...    33  1.7
PHZC_PSEFL (Q51789) Probable phospho-2-dehydro-3-deoxyheptonate ...    32  2.8
FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)      32  2.8
FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and leuci...    31  4.8
SGCE_HUMAN (O43556) Epsilon-sarcoglycan precursor (Epsilon-SG)         31  6.3
FXLH_MOUSE (Q9QZN1) F-box/LRR-repeat protein 17 (F-box and leuci...    31  6.3
COPP_DROME (O62621) Coatomer beta' subunit (Beta'-coat protein) ...    31  6.3
C71P_ARATH (Q9STK8) Cytochrome P450 71A25 (EC 1.14.-.-)                31  6.3
FX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26)      30  8.2

>FBW5_MOUSE (Q9QXW2) F-box/WD-repeat protein 5 (F-box and WD-40
           domain protein 5)
          Length = 573

 Score = 35.4 bits (80), Expect = 0.26
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 8   LPWLPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTHQRL 67
           LP LPD L+++I   +  + V++   VC+ W+ +  D    K+ +   +     +     
Sbjct: 6   LPLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWKEQFYRYYQVARDVPRHPA 65

Query: 68  AS------LGCYDRTPFSSVTSLT--FQQLVSLAFYDDRKSLTSC 104
           A+         YD  P   V +L     Q++ L+F        SC
Sbjct: 66  ATSWYEEFRRLYDMVPCVEVQTLKEHTDQVLHLSFSHSGYQFASC 110


>POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding
          protein 2)
          Length = 662

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 11 LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISD 44
          LP E++  I   +   S++S +C CK WK L+SD
Sbjct: 34 LPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSD 67


>PHZC_PSECL (Q51517) Probable phospho-2-dehydro-3-deoxyheptonate
           aldolase (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate
           aldolase) (DAHP synthetase)
           (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase)
          Length = 400

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 213 GTKSWTTIQNFPCDHQVPWRWWDKQGKFVSGSLNW-WVPER 252
           G+ +WT  +    D+++P    D+QG+   GS +W W+ ER
Sbjct: 179 GSPAWTNHEMLVLDYELPQLRQDEQGRVFLGSTHWPWIGER 219


>FX11_RAT (Q7TSL3) F-box only protein 11
          Length = 843

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 17/54 (31%), Positives = 24/54 (43%)

Query: 11  LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTH 64
           LPDE++ +I   +    +    CVCK +  L +DP   K  Y   F     M H
Sbjct: 75  LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMH 128


>FX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated
           protein VIT-1)
          Length = 843

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 17/54 (31%), Positives = 24/54 (43%)

Query: 11  LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTH 64
           LPDE++ +I   +    +    CVCK +  L +DP   K  Y   F     M H
Sbjct: 75  LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMH 128


>FBW5_HUMAN (Q969U6) F-box/WD-repeat protein 5 (F-box and WD-40
           domain protein 5) (PP3971)
          Length = 566

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 28/109 (25%), Positives = 44/109 (39%), Gaps = 18/109 (16%)

Query: 9   PWLPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDP-----------QFAKDHYRTSFS 57
           P LPD L+++I   +  + V++   VC+ W+ +  D            Q A+D  R   +
Sbjct: 7   PLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWREQFYRYYQVARDVPRHPAA 66

Query: 58  SVTSMTHQRLASLGCYDRTPFSSVTSLT--FQQLVSLAFYDDRKSLTSC 104
                  QRL     YD  P   V +L     Q++ L+F        SC
Sbjct: 67  MSWYEEFQRL-----YDTVPCVEVQTLREHTDQVLHLSFSHSGYQFASC 110


>PHZC_PSEFL (Q51789) Probable phospho-2-dehydro-3-deoxyheptonate
           aldolase (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate
           aldolase) (DAHP synthetase)
           (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase)
          Length = 400

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 213 GTKSWTTIQNFPCDHQVPWRWWDKQGKFVSGSLNW-WVPER 252
           G+ +WT+ +    D+++P    D+QG+   GS +W W+ ER
Sbjct: 179 GSPAWTSHEMLVLDYELPQVRRDEQGRTFLGSTHWPWIGER 219


>FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)
          Length = 278

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 4  PHSRLPWLPDELIFEILFRVPVSSVMSFKC--VCKSWKTLISDP-----QFAKD 50
          P   L  LP EL+ ++L  VP  S+++ +C  VC++W+ ++  P     Q A+D
Sbjct: 14 PSLALDALPPELLVQVLSHVPPRSLVT-RCRPVCRAWRDIVDGPTVWLLQLARD 66


>FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and
          leucine-rich repeat protein 12) (F-box protein FBL12)
          Length = 326

 Score = 31.2 bits (69), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 11 LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISD 44
          LPD ++ EI   +PV   +    VC  WK L+ D
Sbjct: 7  LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDD 40


>SGCE_HUMAN (O43556) Epsilon-sarcoglycan precursor (Epsilon-SG)
          Length = 438

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 12/100 (12%)

Query: 238 GKFVSGSLNWWVPERNGIISFDLEKETYGEVLLPLH---------MGGDHPFNHVL-EVL 287
           G F+    N W PER   I+     +  G V LP++         +G D PF+  L EV 
Sbjct: 157 GDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVE 216

Query: 288 SNRLCLCYFNDIHCVVWLIKKYGNQ--QSWKKLMLIPHSK 325
           + +  L    ++  V+   KK+  Q    W K+ L+  +K
Sbjct: 217 NPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTK 256


>FXLH_MOUSE (Q9QZN1) F-box/LRR-repeat protein 17 (F-box and
           leucine-rich repeat protein 17) (F-box only protein 13)
           (Fragment)
          Length = 462

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 2   RQPHSRLP---WLPDELIFEILFRVPVSS-VMSFKCVCKSWKTLISDPQFAKDHYRTSFS 57
           R+P   +P    LP  ++ +I   + ++   +S   VCK W+ L  D QF K    +S  
Sbjct: 73  REPPPEIPDINQLPPSILLKIFSNLSLNERCLSASLVCKYWRDLCLDFQFWKQLDLSSRQ 132

Query: 58  SVTSMTHQRLAS 69
            VT    +++AS
Sbjct: 133 QVTDELLEKIAS 144


>COPP_DROME (O62621) Coatomer beta' subunit (Beta'-coat protein)
           (Beta'-COP)
          Length = 914

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 18/71 (25%), Positives = 32/71 (44%), Gaps = 10/71 (14%)

Query: 260 LEKETYGEVLLPLHMGGDHPFNHVLEVLSNRLCLCYFNDIHCVVWLIKKYGNQQSWKKLM 319
           LEK+ +    L +    DH F+  L++           D+   + L ++  N Q W +L 
Sbjct: 627 LEKQGFKSQALQVSTDADHKFDLALQI----------GDLEIALKLARESENSQKWSQLA 676

Query: 320 LIPHSKLNMAM 330
            +  SK NM++
Sbjct: 677 DVASSKNNMSL 687


>C71P_ARATH (Q9STK8) Cytochrome P450 71A25 (EC 1.14.-.-)
          Length = 490

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 20/60 (33%), Positives = 30/60 (49%), Gaps = 6/60 (10%)

Query: 259 DLEKETYGEVLLPLHMGGDHPFNHVLEVLSNRLCLCYFNDIHCVVWLIKKYGNQQSWKKL 318
           D+ +E    ++  +      PFN V +VL      C  ND+ C V L +KYG +  +KKL
Sbjct: 144 DVREEEITLMMAKIRKSSSLPFN-VSKVLE-----CLTNDVICRVALGRKYGGETDFKKL 197


>FX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26)
          Length = 286

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 8/47 (17%)

Query: 11 LPDELIFEILFRVPVSSVMSFKC--VCKSWKTLISDP-----QFAKD 50
          LP EL+ ++L  VP  ++++ +C  VC++W+ L+  P     Q A+D
Sbjct: 21 LPPELLVQVLSHVPPRALVT-RCRPVCRAWRDLVDGPSIWLLQLARD 66


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.324    0.139    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,500,574
Number of Sequences: 164201
Number of extensions: 2101545
Number of successful extensions: 4837
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4830
Number of HSP's gapped (non-prelim): 14
length of query: 396
length of database: 59,974,054
effective HSP length: 112
effective length of query: 284
effective length of database: 41,583,542
effective search space: 11809725928
effective search space used: 11809725928
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)