BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0314.19
(86 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LPXZ_CHLTE (Q8KBX0) LpxC/fabZ bifunctional enzyme [Includes: UDP... 71 6e-13
FABZ_SYNEL (Q8DI01) (3R)-hydroxymyristoyl-[acyl carrier protein]... 69 3e-12
FABZ_SYNY3 (P73848) (3R)-hydroxymyristoyl-[acyl carrier protein]... 67 1e-11
FABZ_CLOPE (Q8XLG8) (3R)-hydroxymyristoyl-[acyl carrier protein]... 62 3e-10
FABZ_ANASP (Q8YUR4) (3R)-hydroxymyristoyl-[acyl carrier protein]... 62 3e-10
FABZ_SYNPX (Q7U8Q6) (3R)-hydroxymyristoyl-[acyl carrier protein]... 62 3e-10
FABZ_PROMM (Q7V5X4) (3R)-hydroxymyristoyl-[acyl carrier protein]... 60 8e-10
FABZ_PROMA (Q7TV98) (3R)-hydroxymyristoyl-[acyl carrier protein]... 60 8e-10
FABZ_PROMP (Q7V0D0) (3R)-hydroxymyristoyl-[acyl carrier protein]... 60 1e-09
LPXZ_PORGI (Q7MXT8) LpxC/fabZ bifunctional enzyme [Includes: UDP... 59 2e-09
LPXZ_BACTN (Q8A015) LpxC/fabZ bifunctional enzyme [Includes: UDP... 59 2e-09
FABZ_SALTY (P21773) (3R)-hydroxymyristoyl-[acyl carrier protein]... 58 5e-09
FABZ_ECOLI (P21774) (3R)-hydroxymyristoyl-[acyl carrier protein]... 58 5e-09
FABZ_BORPE (Q7VYB9) (3R)-hydroxymyristoyl-[acyl carrier protein]... 58 5e-09
FABZ_BORBR (Q7WJ83) (3R)-hydroxymyristoyl-[acyl carrier protein]... 58 5e-09
FABZ_BORPA (Q7WA49) (3R)-hydroxymyristoyl-[acyl carrier protein]... 57 8e-09
FABZ_STRR6 (P59202) (3R)-hydroxymyristoyl-[acyl carrier protein]... 56 1e-08
FABZ_DESVH (P61452) (3R)-hydroxymyristoyl-[acyl carrier protein]... 56 1e-08
FABZ_STRPN (P59201) (3R)-hydroxymyristoyl-[acyl carrier protein]... 56 2e-08
FABZ_NITEU (Q82U05) (3R)-hydroxymyristoyl-[acyl carrier protein]... 56 2e-08
>LPXZ_CHLTE (Q8KBX0) LpxC/fabZ bifunctional enzyme [Includes:
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase (EC 3.5.1.-) (UDP-3-O-acyl-GlcNAc
deacetylase); (3R)-hydroxymyristoyl-[acyl carrier
protein] dehydratase (EC 4.2.1.-) ((3R)-hydroxym
Length = 467
Score = 70.9 bits (172), Expect = 6e-13
Identities = 34/84 (40%), Positives = 54/84 (63%), Gaps = 2/84 (2%)
Query: 1 LLLQAMAQVGVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSFE 60
L+++AMAQ G ++ML + FF+GIDK RF KPV+ GDTLV+ +T ++++
Sbjct: 381 LIIEAMAQTGGIMMLNGKENIKESVVFFMGIDKARFRKPVLPGDTLVIEAVMTNMRRT-- 438
Query: 61 LAKMEGKAYVGGEVVCEGEFLMAI 84
+ + + KAYV GE+VCE + +
Sbjct: 439 VCQFDAKAYVRGELVCEASLMATV 462
>FABZ_SYNEL (Q8DI01) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 153
Score = 68.6 bits (166), Expect = 3e-12
Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 1 LLLQAMAQVGVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSFE 60
L+++A+AQVG +V++Q + + F GIDKVRF +PV+ GD L++R L + K
Sbjct: 70 LIVEALAQVGGVVLMQMNWAKDKLSVF-AGIDKVRFRRPVVPGDQLILRAELL-VVKQQR 127
Query: 61 LAKMEGKAYVGGEVVCEGEFLMAI 84
+ KM+G+A V G++VCEGE + ++
Sbjct: 128 IGKMQGRAEVNGQLVCEGEMMFSL 151
>FABZ_SYNY3 (P73848) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 164
Score = 66.6 bits (161), Expect = 1e-11
Identities = 40/87 (45%), Positives = 59/87 (66%), Gaps = 8/87 (9%)
Query: 1 LLLQAMAQVGVLVMLQPEGGGSRENFF-FVGIDKVRFCKPVIAGDTLVMRMTLT--KLQK 57
L++++MAQVG +++ Q G R FF F GID VRF +PV+ GD L+M + L KLQ+
Sbjct: 81 LIVESMAQVGGVILTQLPG--MRGKFFAFAGIDGVRFRRPVVPGDQLIMTVELQSFKLQR 138
Query: 58 SFELAKMEGKAYVGGEVVCEGEFLMAI 84
+AKM+G+A V G++VC GE L ++
Sbjct: 139 ---IAKMQGEARVDGQLVCGGEMLFSL 162
>FABZ_CLOPE (Q8XLG8) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 139
Score = 62.0 bits (149), Expect = 3e-10
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 1 LLLQAMAQVGVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSFE 60
L+++A+AQ G + +L E + FF GIDKVRF K V+ GDTL + + + KL+ S
Sbjct: 58 LIVEALAQAGAIALLNKEEFKGKTPFF-AGIDKVRFKKQVLPGDTLRLEVEIIKLRGSIG 116
Query: 61 LAKMEGKAYVGGEVVCEGEFLMAIG 85
K A V G++ C GE + AIG
Sbjct: 117 FGK--ATATVDGKIACSGEIMFAIG 139
>FABZ_ANASP (Q8YUR4) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 171
Score = 62.0 bits (149), Expect = 3e-10
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 1 LLLQAMAQVGVLVMLQPEG--GGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKS 58
L+++AMAQVG +VM Q G GG F F GIDKVRF + V+ GD LVM + L + K
Sbjct: 88 LIVEAMAQVGGIVMTQLPGLEGGL---FVFAGIDKVRFRRQVVPGDQLVMTVELLWI-KQ 143
Query: 59 FELAKMEGKAYVGGEVVCEGEFLMAI 84
KM+ +A V G++ EGE + ++
Sbjct: 144 RRFGKMQARAEVDGQLAAEGELMFSL 169
>FABZ_SYNPX (Q7U8Q6) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 156
Score = 61.6 bits (148), Expect = 3e-10
Identities = 36/88 (40%), Positives = 54/88 (60%), Gaps = 10/88 (11%)
Query: 1 LLLQAMAQVGVLVMLQ----PEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQ 56
L+++AMAQVG L++ Q P+G F F GID VRF +PV+ GD LV+ L L+
Sbjct: 73 LIVEAMAQVGGLIVTQMPDLPKG-----LFVFAGIDGVRFRRPVVPGDQLVIHCELLSLK 127
Query: 57 KSFELAKMEGKAYVGGEVVCEGEFLMAI 84
+ K++ +A V GE+VC GE + ++
Sbjct: 128 RK-RFGKVKAEAKVDGELVCSGELMFSL 154
>FABZ_PROMM (Q7V5X4) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 142
Score = 60.5 bits (145), Expect = 8e-10
Identities = 35/88 (39%), Positives = 53/88 (59%), Gaps = 10/88 (11%)
Query: 1 LLLQAMAQVGVLVMLQ----PEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQ 56
L+++AMAQVG L++ Q P+G F F GID VRF +PV+ GD L + L L+
Sbjct: 59 LIVEAMAQVGGLIVAQMPDLPKG-----LFVFAGIDAVRFRRPVVPGDQLTISCELLSLK 113
Query: 57 KSFELAKMEGKAYVGGEVVCEGEFLMAI 84
+ K+ G+A V G++VC GE + ++
Sbjct: 114 RQ-RFGKVRGEARVEGQLVCSGELMFSL 140
>FABZ_PROMA (Q7TV98) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 151
Score = 60.5 bits (145), Expect = 8e-10
Identities = 34/88 (38%), Positives = 54/88 (60%), Gaps = 10/88 (11%)
Query: 1 LLLQAMAQVGVLVMLQ----PEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQ 56
L+++AMAQVG L++ Q P+G F F GID VRF +PV+ GD L++ L ++
Sbjct: 68 LIVEAMAQVGGLIVKQIPDLPKG-----LFVFAGIDSVRFRRPVVPGDQLLINCELISIK 122
Query: 57 KSFELAKMEGKAYVGGEVVCEGEFLMAI 84
+ K++G+A V G +VC GE + ++
Sbjct: 123 RQ-RFGKVKGEAKVDGNLVCSGELMFSL 149
>FABZ_PROMP (Q7V0D0) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 152
Score = 59.7 bits (143), Expect = 1e-09
Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 10/88 (11%)
Query: 1 LLLQAMAQVGVLVMLQ----PEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQ 56
L+++AMAQVG +++ Q P+G F F GI+ V+F +PV+ GD LV+ L ++
Sbjct: 69 LIVEAMAQVGGIIVTQMPDLPKG-----LFVFAGINNVKFRRPVVPGDQLVITCELLSIK 123
Query: 57 KSFELAKMEGKAYVGGEVVCEGEFLMAI 84
+ K++G+A+V G++VC GE + ++
Sbjct: 124 RQ-RFGKVKGEAHVDGKLVCSGELMFSL 150
>LPXZ_PORGI (Q7MXT8) LpxC/fabZ bifunctional enzyme [Includes:
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase (EC 3.5.1.-) (UDP-3-O-acyl-GlcNAc
deacetylase); (3R)-hydroxymyristoyl-[acyl carrier
protein] dehydratase (EC 4.2.1.-) ((3R)-hydroxym
Length = 462
Score = 58.9 bits (141), Expect = 2e-09
Identities = 33/85 (38%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 1 LLLQAMAQVGVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRM-TLTKLQKSF 59
L ++AMAQVG L++L S + +F+ IDKV+F + V+ GDTLV ++ ++++++
Sbjct: 375 LQVEAMAQVGGLLVLNTLTEPSSYSTYFLMIDKVKFRRKVVPGDTLVFKLRMISEIRRG- 433
Query: 60 ELAKMEGKAYVGGEVVCEGEFLMAI 84
+A M G A+VG ++ CE EF+ I
Sbjct: 434 -VANMRGLAFVGEQLACEAEFMAQI 457
>LPXZ_BACTN (Q8A015) LpxC/fabZ bifunctional enzyme [Includes:
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase (EC 3.5.1.-) (UDP-3-O-acyl-GlcNAc
deacetylase); (3R)-hydroxymyristoyl-[acyl carrier
protein] dehydratase (EC 4.2.1.-) ((3R)-hydroxym
Length = 461
Score = 58.9 bits (141), Expect = 2e-09
Identities = 34/84 (40%), Positives = 53/84 (62%), Gaps = 1/84 (1%)
Query: 1 LLLQAMAQVGVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSFE 60
L ++AMAQVG L++L R + +F+ ID V+F + V+ GDTL+ R+ L +
Sbjct: 375 LQIEAMAQVGGLLVLNSVDEPERYSTYFMKIDGVKFRQKVVPGDTLLFRVELLAPIRR-G 433
Query: 61 LAKMEGKAYVGGEVVCEGEFLMAI 84
++ M+G A+VG +VVCE EF+ I
Sbjct: 434 ISTMKGYAFVGEKVVCEAEFMAQI 457
>FABZ_SALTY (P21773) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 151
Score = 57.8 bits (138), Expect = 5e-09
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 1 LLLQAMAQV-GVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSF 59
L+L+AMAQ G+L E ++F GID+ RF +PV+ GD ++M +T K ++
Sbjct: 65 LILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMIMEVTFEKTRRG- 123
Query: 60 ELAKMEGKAYVGGEVVCEGEFLMA 83
L + +G A V G+VVCE + A
Sbjct: 124 -LTRFKGVALVDGKVVCEATMMCA 146
>FABZ_ECOLI (P21774) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase) (17 kDa actomyosin component)
Length = 151
Score = 57.8 bits (138), Expect = 5e-09
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 1 LLLQAMAQV-GVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSF 59
L+L+AMAQ G+L E ++F GID+ RF +PV+ GD ++M +T K ++
Sbjct: 65 LILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMIMEVTFEKTRRG- 123
Query: 60 ELAKMEGKAYVGGEVVCEGEFLMA 83
L + +G A V G+VVCE + A
Sbjct: 124 -LTRFKGVALVDGKVVCEATMMCA 146
>FABZ_BORPE (Q7VYB9) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 151
Score = 57.8 bits (138), Expect = 5e-09
Identities = 32/91 (35%), Positives = 52/91 (56%), Gaps = 7/91 (7%)
Query: 1 LLLQAMAQVGVLVMLQPEGGG-----SRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKL 55
L+++AMAQ L E GG ++ ++ VGID RF KPV+ GD L + + +L
Sbjct: 60 LIVEAMAQASALFSFTDENGGLKCDGAKTAYYLVGIDGARFRKPVVPGDQLRLEVEAERL 119
Query: 56 QKSFELAKMEGKAYVGGEVVCEGEFLMAIGS 86
++ + K +G+A V G++V E + + AI S
Sbjct: 120 SRT--ICKYQGRALVDGQLVAEAKLMCAIRS 148
>FABZ_BORBR (Q7WJ83) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 151
Score = 57.8 bits (138), Expect = 5e-09
Identities = 32/91 (35%), Positives = 52/91 (56%), Gaps = 7/91 (7%)
Query: 1 LLLQAMAQVGVLVMLQPEGGG-----SRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKL 55
L+++AMAQ L E GG ++ ++ VGID RF KPV+ GD L + + +L
Sbjct: 60 LIVEAMAQASALFSFTDENGGLKCDGAKTAYYLVGIDGARFRKPVVPGDQLRLEVEAERL 119
Query: 56 QKSFELAKMEGKAYVGGEVVCEGEFLMAIGS 86
++ + K +G+A V G++V E + + AI S
Sbjct: 120 SRT--ICKYQGRALVDGQLVAEAKLMCAIRS 148
>FABZ_BORPA (Q7WA49) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 151
Score = 57.0 bits (136), Expect = 8e-09
Identities = 33/91 (36%), Positives = 51/91 (55%), Gaps = 7/91 (7%)
Query: 1 LLLQAMAQVGVLVMLQPEGGG-----SRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKL 55
L+++AMAQ L E GG ++ ++ VGID RF KPV+ GD L + + +L
Sbjct: 60 LIVEAMAQASALFSFTDENGGLKCDGAKTAYYLVGIDGARFRKPVVPGDQLRLEVEAERL 119
Query: 56 QKSFELAKMEGKAYVGGEVVCEGEFLMAIGS 86
S + K +G+A V G++V E + + AI S
Sbjct: 120 --SCTICKYQGRALVDGQLVAEAKLMCAIRS 148
>FABZ_STRR6 (P59202) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 140
Score = 56.2 bits (134), Expect = 1e-08
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 1 LLLQAMAQV-GVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSF 59
L+++A+AQ GVL + +PE G F+ G+DKV+F K V+ GD LVM T K + +
Sbjct: 58 LIMEALAQTAGVLELSKPENKGKL--VFYAGMDKVKFKKQVVPGDQLVMTATFVKRRGT- 114
Query: 60 ELAKMEGKAYVGGEVVCEGEFLMAIGS 86
+A +E KA V G++ G AIG+
Sbjct: 115 -IAVVEAKAEVDGKLAASGILTFAIGN 140
>FABZ_DESVH (P61452) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 154
Score = 56.2 bits (134), Expect = 1e-08
Identities = 33/85 (38%), Positives = 49/85 (56%), Gaps = 3/85 (3%)
Query: 1 LLLQAMAQVG-VLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSF 59
L+++A+AQ G +LV+ + + F F GI+ VRF KPV GD L + L L+
Sbjct: 66 LIMEALAQAGGILVVKSTDTAVEDKLFLFTGIESVRFRKPVYPGDKLELHCRL--LKHKL 123
Query: 60 ELAKMEGKAYVGGEVVCEGEFLMAI 84
+L KMEG+AYV G++ E A+
Sbjct: 124 KLWKMEGRAYVDGKLAAEAVMTAAV 148
>FABZ_STRPN (P59201) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 140
Score = 55.8 bits (133), Expect = 2e-08
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 1 LLLQAMAQV-GVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSF 59
++++A+AQ GVL + +PE G F+ G+DKV+F K V+ GD LVM T K + +
Sbjct: 58 VIMEALAQTAGVLELSKPENKGKL--VFYAGMDKVKFKKQVVPGDQLVMTATFVKRRGT- 114
Query: 60 ELAKMEGKAYVGGEVVCEGEFLMAIGS 86
+A +E KA V G++ G AIG+
Sbjct: 115 -IAVVEAKAEVDGKLAASGTLTFAIGN 140
>FABZ_NITEU (Q82U05) (3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP
dehydrase)
Length = 153
Score = 55.8 bits (133), Expect = 2e-08
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 1 LLLQAMAQVGVLVMLQPEG--GGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKS 58
L+++A+AQ L+ ++ E + + ++FVGID VRF KPVIAGD LV+++ +T+ K
Sbjct: 67 LIIEALAQAAALLTIRSENMEKDNGQVYYFVGIDAVRFKKPVIAGDQLVLKVEITRQLKG 126
Query: 59 FELAKMEGKAYVGGEVVCEGEFL 81
+ K A V G+VV E + +
Sbjct: 127 --IWKYAACAEVDGQVVTEAQLM 147
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.142 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,216,364
Number of Sequences: 164201
Number of extensions: 295839
Number of successful extensions: 811
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 112
length of query: 86
length of database: 59,974,054
effective HSP length: 62
effective length of query: 24
effective length of database: 49,793,592
effective search space: 1195046208
effective search space used: 1195046208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0314.19