BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0310b.7
         (1046 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergeni...    40  0.033
PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, m...    36  0.47
UROK_PIG (P04185) Urokinase-type plasminogen activator precursor...    33  3.1
RNB_YERPE (Q8ZED8) Exoribonuclease II (EC 3.1.13.1) (Ribonucleas...    33  5.2
KITH_EHV4 (P24425) Thymidine kinase (EC 2.7.1.21)                      33  5.2
NFIX_HUMAN (Q14938) Nuclear factor 1 X-type (Nuclear factor 1/X)...    32  8.9
HEPA_HHV7J (P52376) DNA helicase/primase complex associated protein    32  8.9

>YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergenic
           region
          Length = 723

 Score = 40.0 bits (92), Expect = 0.033
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 14/130 (10%)

Query: 626 GGRTAHSRFSIPLNINETLTCKVSKGSLKAKLL---QQSSLIIWDEAPMLNIFCFEALDR 682
           GG T H    I +  N+T+   V K   +  LL   + + ++I DE  M++    + L++
Sbjct: 294 GGSTLHKWSGIGIG-NKTIDQLVKKIQSQKDLLAAWRYTKVLIIDEISMVDGNLLDKLEQ 352

Query: 683 TLKDIMSSENRANANKPFGGKVVVLGGDFKQILHVIQKGSRQDIVTATVNSSYLWENC-- 740
             + I  +++      PFGG  +VL GDF Q+  V +K      V      S +W+ C  
Sbjct: 353 IARRIRKNDD------PFGGIQLVLTGDFFQLPPVAKKDEHN--VVKFCFESEMWKRCIQ 404

Query: 741 KVLSLTKNMR 750
           K + LTK  R
Sbjct: 405 KTILLTKVFR 414


>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1,
           mitochondrial precursor
          Length = 805

 Score = 36.2 bits (82), Expect = 0.47
 Identities = 39/151 (25%), Positives = 64/151 (41%), Gaps = 18/151 (11%)

Query: 626 GGRTAHSRFSIPLNIN--ETLTCKVSKGSLKAKLLQQSSLIIWDEAPMLNIFCFEALDRT 683
           GG T HS   + L     + L  K+ K         ++ ++I DE  M++    + L+  
Sbjct: 374 GGVTLHSFAGVGLARESVDLLVSKIKKNKKCVNRWLRTRVLIIDEVSMVDAELMDKLEEV 433

Query: 684 LKDIMSSENRANANKPFGGKVVVLGGDFKQILHVIQKGSRQDIVTATVNSSYLWENCKVL 743
            + I         +KPFGG  +VL GDF Q+  V + G            S  W++    
Sbjct: 434 ARVIRKD------SKPFGGIQLVLTGDFFQLPPVPENGKESKFCF----ESQTWKS---- 479

Query: 744 SLTKNMRLLNTNGHQDNDDVKEFSE*ILKLG 774
           +L   + L +    +D + VK  +E  L+LG
Sbjct: 480 ALDFTIGLTHVFRQKDEEFVKMLNE--LRLG 508


>UROK_PIG (P04185) Urokinase-type plasminogen activator precursor
           (EC 3.4.21.73) (uPA) (U-plasminogen activator)
          Length = 442

 Score = 33.5 bits (75), Expect = 3.1
 Identities = 39/144 (27%), Positives = 53/144 (36%), Gaps = 40/144 (27%)

Query: 176 MHGPCGKANPTCACMKNGKCT--KYF--------PKKFQ--------NSTTIDDNGYPHY 217
           +H   G +N  C C+  GKC   KYF        PKKFQ        + T  + NG+  Y
Sbjct: 24  LHQESGASN--CGCLNGGKCVSYKYFSNIQRCSCPKKFQGEHCEIDTSQTCFEGNGH-SY 80

Query: 218 RRRQSGIKVLKNGIELDSRNVVPYNPK--LLMRYHAHI---------NVEYCNKSNSIKY 266
           R         K       R  +P+N    LL  YHAH             YC   ++ + 
Sbjct: 81  RG--------KANTNTGGRPCLPWNSATVLLNTYHAHRPDALQLGLGKHNYCRNPDNQRR 132

Query: 267 LFKYVNKGSDRVTAEITTTAESSG 290
            + YV  G  ++  E      S G
Sbjct: 133 PWCYVQVGLKQLVQECMVPNCSGG 156


>RNB_YERPE (Q8ZED8) Exoribonuclease II (EC 3.1.13.1) (Ribonuclease
           II) (RNase II)
          Length = 644

 Score = 32.7 bits (73), Expect = 5.2
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 81  KEIADFVCSINLKPDER-PYIVCRVFKMKVDNLIADLKKENIFGEVDAGLPHAHILLWLH 139
           ++++D +CS  L+P+ER P +VCRV   +   L  D++    + E  A L +  +  WL 
Sbjct: 264 RDLSDNLCS--LRPNERRPVLVCRVTITEEGTLSNDIRFSAAWVESKAKLVYDDVSDWLE 321

Query: 140 GESK 143
           G ++
Sbjct: 322 GNNR 325


>KITH_EHV4 (P24425) Thymidine kinase (EC 2.7.1.21)
          Length = 352

 Score = 32.7 bits (73), Expect = 5.2
 Identities = 25/84 (29%), Positives = 37/84 (43%), Gaps = 6/84 (7%)

Query: 629 TAH--SRFSIPLNINETLTCKVSKGSLKAKLLQQSSLIIWDEAPMLNIFCFEALDRTLKD 686
           TAH  SRF+ P  I    TC +  G+   +  Q    +++D  P+ +  CF A    L D
Sbjct: 98  TAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGD 157

Query: 687 IMSSENRANA----NKPFGGKVVV 706
           +      A       +P GG +VV
Sbjct: 158 MSMCALMAMVATLPREPQGGNIVV 181


>NFIX_HUMAN (Q14938) Nuclear factor 1 X-type (Nuclear factor 1/X)
           (NF1-X) (NFI-X) (NF-I/X) (CCAAT-box binding
           transcription factor) (CTF) (TGGCA-binding protein)
          Length = 502

 Score = 32.0 bits (71), Expect = 8.9
 Identities = 19/65 (29%), Positives = 30/65 (45%), Gaps = 1/65 (1%)

Query: 757 HQDNDDVKEFSE*ILKLGNGESTPNDDGKMLIDVPHDLFITDPSEPLLQLIQFVYPDMVS 816
           H   D +KEF + +   G+G++T   +G     VP   F+  P  P+ + +    PD  S
Sbjct: 394 HHGQDSLKEFVQFVCSDGSGQATGQPNGSGQGKVPGS-FLLPPPPPVARPVPLPMPDSKS 452

Query: 817 HLTDP 821
             T P
Sbjct: 453 TSTAP 457


>HEPA_HHV7J (P52376) DNA helicase/primase complex associated protein
          Length = 659

 Score = 32.0 bits (71), Expect = 8.9
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 9/55 (16%)

Query: 51  MFNNCQDAMAICKKMGFPYLFITITCNSNWKEIADFVC----SINLKPDERPYIV 101
           MF N Q    I +K+   ++F+TI  NSN  EI D VC    ++   PD RP I+
Sbjct: 89  MFGNKQ----IIQKLSRTFIFLTIILNSNMYEIID-VCIDSNAVLYMPDLRPMII 138


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.333    0.145    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,402,759
Number of Sequences: 164201
Number of extensions: 5033361
Number of successful extensions: 15947
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15945
Number of HSP's gapped (non-prelim): 9
length of query: 1046
length of database: 59,974,054
effective HSP length: 120
effective length of query: 926
effective length of database: 40,269,934
effective search space: 37289958884
effective search space used: 37289958884
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 71 (32.0 bits)