BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0310b.12
(1485 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 634 0.0
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 516 e-145
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 175 1e-42
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 169 5e-41
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 155 6e-37
YMU0_YEAST (Q04670) Transposon Ty1 protein B 149 7e-35
YJZ9_YEAST (P47100) Transposon Ty1 protein B 146 4e-34
YMT5_YEAST (Q04214) Transposon Ty1 protein B 145 8e-34
YME4_YEAST (Q04711) Transposon Ty1 protein B 140 3e-32
YMD9_YEAST (Q03434) Transposon Ty1 protein B 138 1e-31
YJZ7_YEAST (P47098) Transposon Ty1 protein B 136 5e-31
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 131 2e-29
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 101 2e-20
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 66 6e-10
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 53 7e-06
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 49 8e-05
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 49 1e-04
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 46 9e-04
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 42 0.010
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 40 0.037
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 634 bits (1634), Expect = 0.0
Identities = 471/1486 (31%), Positives = 730/1486 (48%), Gaps = 207/1486 (13%)
Query: 38 RLDGRN-YLQWSELVRHTLISRQKISYIEETAPAETDPQYDTWREENSLIMTWFWYSMIP 96
+ +G N + W +R LI + ++ + + + W + + + +
Sbjct: 10 KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSD 69
Query: 97 EISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVF--NSKQGTLSVTDYYGTLNG 154
++ N + TA+ IW L Y K + Y L+ +++ + +GT + + NG
Sbjct: 70 DVVNNIIDEDTARGIWTRLESLYMSKTLTNKLY-LKKQLYALHMSEGT-NFLSHLNVFNG 127
Query: 155 LWIELDQYQNLKMKCDSDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQILGKEQFPSLSE 214
L + Q NL +K + E+ + L+ L S +D + IL + L +
Sbjct: 128 L---ITQLANLGVKIE----------EEDKAILLLNSLPSSYDNLATTILHGKTTIELKD 174
Query: 215 VFSIVRGEETRRTVMVEDKSVDGSALAS---GKGPIKGSTSFGRPN-RDDRPNRDDRFNG 270
V S + E R + G AL + G+ + S ++GR R NR
Sbjct: 175 VTSALLLNEKMR----KKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSK---- 226
Query: 271 DDRFNRDDRCTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQRRANHTASDMENDGEV 330
+R C C + GH K C R K + + Q+ ++TA+ ++N+
Sbjct: 227 ----SRVRNCYNCNQPGHFKRDCPN--------PRKGKGETSGQKNDDNTAAMVQNN--- 271
Query: 331 PPVPPAEDVPSLSKAELERLRVFMDSLSKPSGSCSLTMTGKSSTFLSLNALSTENDWIID 390
++V E E + LS P E++W++D
Sbjct: 272 ------DNVVLFINEEEECMH-----LSGP-----------------------ESEWVVD 297
Query: 391 FGATDHMTPHPSHLSSYSTYPGKHYITV--ANGSQNQITGCGNI----HLSPSLPLKRVL 444
A+ H TP + Y + TV N S ++I G G+I ++ +L LK V
Sbjct: 298 TAASHHATPVRD---LFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVR 354
Query: 445 HVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQD--LATGQIIGIAK--EQDGLYCLQHE 500
HVP L NL+S L RD + S+ Q L G ++ IAK + LY E
Sbjct: 355 HVPDLRMNLISGIALDRD------GYESYFANQKWRLTKGSLV-IAKGVARGTLYRTNAE 407
Query: 501 ESKCHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSKVSVESFH-------CDVC 553
+ +++ + +W HKR+GH L+ + +K S+ S+ CD C
Sbjct: 408 ICQGELNAAQDEISVDLW--HKRMGHMSEKGLQ-----ILAKKSLISYAKGTTVKPCDYC 460
Query: 554 QFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMK 613
F K HR +F S+ + DLV+SDV GP I ++ G K+FVTFIDD +R WV+++K
Sbjct: 461 LFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 520
Query: 614 DKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQ 673
K +VFQ+F F ++ + G+ +KRLRSDNG E ++ F E+ + +G+ HE T PQ
Sbjct: 521 TKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 580
Query: 674 QNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTS 733
NGVAER NR ++E R++L +PK +WGEAV TA YLINR PS L+ P V T+
Sbjct: 581 HNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTN 640
Query: 734 FFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRR 793
S +VFGC AF HV R KLD ++I CIFIGY ++ GY+ + P ++
Sbjct: 641 KEVSYS-----HLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKK 695
Query: 794 VYISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQEPLMPSSIPITEDSDDDDN 853
V S DV F+ESE +E + +IP S+ P + +S D+
Sbjct: 696 VIRSRDVVFRESEVRTA--------ADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDE- 746
Query: 854 GPEQVPNQNDDNGLELVPDQNDDNGPELVPDQNNVDRFRIKYQRKVKPVLIQQQDQPSDP 913
V Q + G + + D G E V P ++Q QP
Sbjct: 747 ----VSEQGEQPGEVIEQGEQLDEGVEEVEH----------------PTQGEEQHQP--- 783
Query: 914 EVSVPNPEPSNSYEHNLDDLPIALRKGKR---SCAKYPISQYVSTQNLSVQHQSFISAID 970
LR+ +R +YP ++YV I
Sbjct: 784 -----------------------LRRSERPRVESRRYPSTEYV--------------LIS 806
Query: 971 SIRVPTSVQEVL---KDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYR 1027
R P S++EVL + + ++AM EEM +L KNGT K+VE P KR + CKW++ +K
Sbjct: 807 DDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKD 866
Query: 1028 SDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNA 1087
D L RYKARLV KG+ Q GID+DE F+PV KM ++R ILSLAA D E++Q DVK A
Sbjct: 867 GDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTA 926
Query: 1088 FLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQS 1147
FLHGDLEEE+YME P G++ ++ VCKL K+LYGLKQ+PR W+ +F + M S Y ++
Sbjct: 927 FLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKT 986
Query: 1148 QGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLG 1207
D ++ K +LL+YV+DM+I G D+ L+ +L+ F+MKDLG + LG
Sbjct: 987 YSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILG 1046
Query: 1208 MEVAYSK--QGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSS------EEDLRV 1259
M++ + + +++SQ KY+ +L+ KP+ P+ + K+ EE +
Sbjct: 1047 MKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNM 1106
Query: 1260 HKAQYQRLVGKLIY-LSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGL 1318
K Y VG L+Y + TRPDIA+ V VVS+F+ +P + H +AV IL+YL+ + G L
Sbjct: 1107 AKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL 1166
Query: 1319 LFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFR 1378
F S+ + ++ YTDAD AG I +R+S+TGY G ++W+SK Q VA S+ EAE+
Sbjct: 1167 CFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225
Query: 1379 AMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIK 1438
A + E++ +K L +L + ++ ++CD++SAI ++ N + H RTKHI++ H+I+
Sbjct: 1226 AATETGKEMIWLKRFLQELGL-HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIR 1284
Query: 1439 EKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDIHS 1484
E ++ + + + AD+LTK +P +F CK ++ +HS
Sbjct: 1285 EMVDDESLKVLKISTNENPADMLTKVVPRNKFE--LCK-ELVGMHS 1327
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 516 bits (1330), Expect = e-145
Identities = 410/1503 (27%), Positives = 709/1503 (46%), Gaps = 175/1503 (11%)
Query: 40 DGRNYLQWSELVRHTLISRQKISYIEETAPAETDPQYDTWREENSLIMTWFWYSMIPEIS 99
DG Y W +R L + + ++ P E D D+W++ + ++I +S
Sbjct: 12 DGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVD---DSWKKAERCAKS----TIIEYLS 64
Query: 100 RNYMFFPT----AKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGT-LSVTDYYGTLNG 154
+++ F T A++I NL Y +K L++ L ++ + K + +S+ ++ +
Sbjct: 65 DSFLNFATSDITARQILENLDAVYERKS-LASQLALRKRLLSLKLSSEMSLLSHFHIFDE 123
Query: 155 LWIELDQYQNLKMKCDSDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQILGKEQFPSLSE 214
L EL K E +I L L S +D I I E +
Sbjct: 124 LISEL-------------LAAGAKIEEMDKISHLLITLPSCYDGIITAI---ETLSEENL 167
Query: 215 VFSIVRGEETRRTVMVEDKSVDGSALASGKGPIKGSTSFGR---PNRDDRPNRDDRFNGD 271
+ V+ + + +++ D S + ++ NR +P + F G+
Sbjct: 168 TLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKI--FKGN 225
Query: 272 DRFNRDDRCTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQRRANHTASDMENDGEVP 331
++ +C +C R GH K+ C + + +L +K EN+ +V
Sbjct: 226 SKYKV--KCHHCGREGHIKKDC---FHYKRILNNKNK----------------ENEKQVQ 264
Query: 332 PVPPAEDVPSLSKAELERLRVFMDSLSKPSGSCSLTMTGKSSTFLSLNALSTEND--WII 389
+ T G + +N S ++ +++
Sbjct: 265 ---------------------------------TATSHGIAFMVKEVNNTSVMDNCGFVL 291
Query: 390 DFGATDHMTPHPS-HLSSYSTYPGKHYITVANGSQNQITGCGNIHL--SPSLPLKRVLHV 446
D GA+DH+ S + S P G T G + L + L+ VL
Sbjct: 292 DSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFC 351
Query: 447 PKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHE------ 500
+ + NL+S+ +L ++ ++ F S G+ ++GL +++
Sbjct: 352 KEAAGNLMSVKRL-QEAGMSIEFDKS-------------GVTISKNGLMVVKNSGMLNNV 397
Query: 501 ---ESKCHQTSSESWNTSQIWLRHKRLGH-PPFSILRTMFPHLFSKVSVES---FHCDVC 553
+ + +++ N ++W H+R GH +L ++FS S+ + C++C
Sbjct: 398 PVINFQAYSINAKHKNNFRLW--HERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEIC 455
Query: 554 QFSKHHRSTFLP-----SNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITW 608
+ + + LP +P +VHSDV GP + + +FV F+D T
Sbjct: 456 EPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCV 515
Query: 609 VFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTC 668
+L+K KS+VF +F +F F + L DNG+E ++ +F K G+ + LT
Sbjct: 516 TYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTV 575
Query: 669 VDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVL--SNVS 726
PQ NGV+ER R + E R ++ + K +WGEAVLTA YLINR+PSR L S+ +
Sbjct: 576 PHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKT 635
Query: 727 PVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKC 786
P + + P + RVFG + +VH+ + +GK D ++ K IF+GY + G+K
Sbjct: 636 PYEMWHNKKPYLK-----HLRVFGATVYVHIK-NKQGKFDDKSFKSIFVGY--EPNGFKL 687
Query: 787 YHPPSRRVYISMDVTFQESES-----------FYPNPQLQGGDTQEAESPELSVIPLLQE 835
+ + + ++ DV E+ F + + +S ++ E
Sbjct: 688 WDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNE 747
Query: 836 PLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDD-NGPELVPDQNNVDRFRIK 894
+I +DS + +N + PN + P+++ + + + + D +++ +
Sbjct: 748 SKECDNIQFLKDSKESEN--KNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLN 805
Query: 895 YQRKVK-PVLIQQQDQPSDPEVSVPNPEPSNSYEHNLDD------LPIALRKGKRSCAKY 947
+K K + + +P S + + E +D+ + I R+ +R K
Sbjct: 806 ESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKP 865
Query: 948 PISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEV-LKDKK--WIQAMNEEMHALDKNGTR 1004
IS +L+ + + + VP S E+ +D K W +A+N E++A N T
Sbjct: 866 QISYNEEDNSLNKVVLNAHTIFND--VPNSFDEIQYRDDKSSWEEAINTELNAHKINNTW 923
Query: 1005 KIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNT 1064
I ++P +K V +W+++VKY G RYKARLVA+G+TQ Y IDY+ETFAPVA++++
Sbjct: 924 TITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISS 983
Query: 1065 VRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGL 1124
R ILSL ++ ++ Q DVK AFL+G L+EE+YM +P G S + VCKL KA+YGL
Sbjct: 984 FRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS--DNVCKLNKAIYGL 1041
Query: 1125 KQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRN-GKLTLLLVYVNDMIIAGNDELEK 1183
KQ+ R WF F A+ + S D ++I N + +L+YV+D++IA D
Sbjct: 1042 KQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRM 1101
Query: 1184 QNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVP 1243
N ++ L +F M DL ++K+F+G+ + + I++SQ YV +L + C + P
Sbjct: 1102 NNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTP 1161
Query: 1244 IEQ--NHKIGSSEEDLRVHKAQYQRLVGKLIYLS-HTRPDIAYPVSVVSQFMHDPQERHL 1300
+ N+++ +S+ED + L+G L+Y+ TRPD+ V+++S++
Sbjct: 1162 LPSKINYELLNSDEDC---NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELW 1218
Query: 1301 QAVDRILQYLKASPGRGLLFKKSEQLSMEV--YTDADYAGSIVDRRSTTGYCM-FLGGNL 1357
Q + R+L+YLK + L+FKK+ ++ Y D+D+AGS +DR+STTGY NL
Sbjct: 1219 QNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNL 1278
Query: 1358 VTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISI 1417
+ W +K+QN VA SS EAE+ A+ + V E L +K +L + IK E P++++ DN+ ISI
Sbjct: 1279 ICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISI 1338
Query: 1418 AHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKL 1477
A+NP H R KHI+I HF +E++ +++I +Y+P+ QLAD+ TK LP RF EL KL
Sbjct: 1339 ANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKL 1398
Query: 1478 GMI 1480
G++
Sbjct: 1399 GLL 1401
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 175 bits (443), Expect = 1e-42
Identities = 89/223 (39%), Positives = 138/223 (60%), Gaps = 3/223 (1%)
Query: 1166 LLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYV 1225
LL+YV+D+++ G+ L +L+ F MKDLG + YFLG+++ G+F+SQ KY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 1226 LDLLKETGKLGCKPMGVPIEQNHKIGSSEEDLRV-HKAQYQRLVGKLIYLSHTRPDIAYP 1284
+L G L CKPM P+ K+ SS + + ++ +VG L YL+ TRPDI+Y
Sbjct: 63 EQILNNAGMLDCKPMSTPLPL--KLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120
Query: 1285 VSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRR 1344
V++V Q MH+P + R+L+Y+K + GL K+ +L+++ + D+D+AG RR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 180
Query: 1345 STTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCEL 1387
STTG+C FLG N+++W +K+Q V+RSS E E+RA+A EL
Sbjct: 181 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAEL 223
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 169 bits (428), Expect = 5e-41
Identities = 101/309 (32%), Positives = 173/309 (55%), Gaps = 6/309 (1%)
Query: 1083 DVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSL 1142
DV AFL+ ++E +Y++ PPG+ + V +L +YGLKQ+P W N + +
Sbjct: 2 DVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKI 61
Query: 1143 GYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKL 1202
G+ + +G+H L+ + T +G + + VYV+D+++A +++EL + MKDLGK+
Sbjct: 62 GFCRHEGEHGLYFRSTSDGPI-YIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1203 KYFLGMEVAYSKQG-IFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSSEEDLRVHK 1261
FLG+ + S G I +S + Y+ E+ K P+ + + +
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1262 AQYQRLVGKLIYLSHT-RPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLLF 1320
YQ +VG+L++ ++T RPDI+YPVS++S+F+ +P+ HL++ R+L+YL + L +
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1321 KKSEQLSMEVYTDADYAGSIVD-RRSTTGYCMFLGGNLVTWRSKK-QNVVARSSAEAEFR 1378
+ Q+++ VY DA + G+I D ST GY L G VTW SKK + V+ S EAE+
Sbjct: 241 RSGSQVALTVYCDASH-GAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYI 299
Query: 1379 AMAQGVCEL 1387
++ V E+
Sbjct: 300 TASETVMEI 308
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 155 bits (393), Expect = 6e-37
Identities = 135/465 (29%), Positives = 216/465 (46%), Gaps = 47/465 (10%)
Query: 1035 YKARLVAKGYTQ---TYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHG 1091
YKAR+V +G TQ TY + E+ N ++I L +A + + ++ D+ +AFL+
Sbjct: 1337 YKARIVCRGDTQSPDTYSVITTESL----NHNHIKIFLMIANNRNMFMKTLDINHAFLYA 1392
Query: 1092 DLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDH 1151
LEEE+Y IP +D R V KL KALYGLKQSP+ W + +G K +
Sbjct: 1393 KLEEEIY--IPHPHD----RRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTP 1446
Query: 1152 TLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKL------KYF 1205
L+ +N ++ VYV+D +IA ++E +L FE+K G L
Sbjct: 1447 GLYQTEDKN---LMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDI 1503
Query: 1206 LGMEVAYSKQ--------GIFISQ--RKYVLDLLKETGKLGCKPMGVPIEQNHKIGS--- 1252
LGM++ Y+K+ FI++ +KY +L K + +P +KI
Sbjct: 1504 LGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKK------IRKSSIPHMSTYKIDPKKD 1557
Query: 1253 ----SEEDLRVHKAQYQRLVGKLIYLSHT-RPDIAYPVSVVSQFMHDPQERHLQAVDRIL 1307
SEE+ R + Q+L+G+L Y+ H R DI + V V++ ++ P ER + +I+
Sbjct: 1558 VLQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKII 1617
Query: 1308 QYLKASPGRGLLFKKSEQLSMEVYTDADYA-GSIVDRRSTTGYCMFLGGNLVTWRSKKQN 1366
QYL G+ + + +V D + GS D +S G ++ G N+ S K
Sbjct: 1618 QYLVRYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKST 1677
Query: 1367 VVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDR 1426
SS EAE A+ +G + +K+ L +L + + D+K AI + Q +
Sbjct: 1678 NRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPK 1737
Query: 1427 TKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFR 1471
K I IKEK+ I + +AD+LTK + F+
Sbjct: 1738 EKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFK 1782
Score = 98.2 bits (243), Expect = 1e-19
Identities = 104/462 (22%), Positives = 176/462 (37%), Gaps = 86/462 (18%)
Query: 521 HKRLGHPPFSILRTMFPHLFSKVSVE------SFHCDVCQFSK----HHRSTFLPSNNKC 570
HKR+GH + H + S++ F C C+ SK +H + + +++
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 571 AQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTR--ITWVFLMKDKSEVFQLFANFFHM 628
+P D++GP S SN ++ + +D+ TR +T K+ +
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 629 IRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEI 688
+ TQF + ++ + SD G E N E+ G+ H LT NG AER R ++
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 689 TRALLFQMNVPKFYWGEAVLTAAYLIN--------RLPSRVLSNVSPVLVMTSFFPSVPI 740
LL Q N+ +W AV +A + N +LP + +S + + SF P
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKSTGKLPLKAISRQPVTVRLMSFLP---- 797
Query: 741 KSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDV 800
FG + H H KL P + I + + GYK + P ++ S +
Sbjct: 798 --------FGEKGIIWNHNHK--KLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTSDNY 847
Query: 801 TFQESESFYPNPQLQG--GDTQEAESPELSVIPLLQEPLMPSSIPITEDSDDDDNGPEQV 858
T PN + G +TQ + S + D+DD+++ E V
Sbjct: 848 TI-------PNYTMDGRVRNTQN----------------INKSHQFSSDNDDEEDQIETV 884
Query: 859 PNQNDDNGLELVPDQNDDNGPELVPDQNNVDRFRIKYQRKVKPVLIQQQDQPSDPEVSVP 918
N E + + DDN P + R + +++ S + +
Sbjct: 885 TNL-----CEALENYEDDNKP--------ITRLEDLF----------TEEELSQIDSNAK 921
Query: 919 NPEPSNSYEHNLDDLPIALRKGKRSCAKYPISQYVSTQNLSV 960
P PSN+ E +LD + Y + +ST N S+
Sbjct: 922 YPSPSNNLEGDLD----YVFSDVEESGDYDVESELSTTNNSI 959
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 149 bits (375), Expect = 7e-35
Identities = 144/532 (27%), Positives = 272/532 (51%), Gaps = 55/532 (10%)
Query: 979 QEVLKDKKWIQAMNEEMHALDKNGT----RKIVEKPND-KRTVGCKWIYTVKYRSDGTLD 1033
+++ + +K+IQA ++E++ L K T R K D KR + +I+ K DGT
Sbjct: 815 KDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRK--RDGT-- 870
Query: 1034 RYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR-----IILSLAAHFDWELQQFDVKNAF 1088
+KAR VA+G I + +T+ P + NTV LSLA ++ + Q D+ +A+
Sbjct: 871 -HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 1089 LHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMV-SLGYKQS 1147
L+ D++EE+Y+ PP +K+ +LKK+LYGLKQS W+ + ++ G ++
Sbjct: 925 LYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1148 QGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMK--DLG----K 1201
+G +F +N ++T+ L +V+DMI+ D + + L Q++ K +LG +
Sbjct: 982 RGWSCVF----KNSQVTICL-FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNE 1036
Query: 1202 LKY-FLGMEVAYS-----KQGIFISQRKYVLDL---LKETGKLGCKP--MGVPIEQNHKI 1250
++Y LG+E+ Y K G+ S + + L L G+ P G+ I+Q ++
Sbjct: 1037 IQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ-QEL 1095
Query: 1251 GSSEEDLRVHKAQYQRLVGKLIYLSHT-RPDIAYPVSVVSQFMHDPQERHLQAVDRILQY 1309
E+D ++ + Q+L+G Y+ + R D+ Y ++ ++Q + P ++ L ++Q+
Sbjct: 1096 ELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQF 1155
Query: 1310 LKASPGRGLLFKKSEQL----SMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQ 1365
+ + + L++ KS+ + + V +DA Y G+ +S G L G ++ +S K
Sbjct: 1156 IWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKA 1214
Query: 1366 NVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAIS-IAHNPVQH 1424
++ S+ EAE A+++ V L + ++ +L K L D+KS IS I N +
Sbjct: 1215 SLTCTSTTEAEIHAISESVPLLNNLSHLVQELN-KKPITKGLLTDSKSTISIIISNNEEK 1273
Query: 1425 DRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCK 1476
R + ++++++ + + Y+ + +ADV+TK LP++ F+ LT K
Sbjct: 1274 FRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 95.1 bits (235), Expect = 1e-18
Identities = 122/565 (21%), Positives = 216/565 (37%), Gaps = 50/565 (8%)
Query: 388 IIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNI--HLSPSLPLK-RVL 444
++D GA+ + H+ S S+ P + + A I G++ H + +VL
Sbjct: 32 LLDSGASRTLIRSAHHIHSASSNPDINVVD-AQKRNIPINAIGDLQFHFQDNTKTSIKVL 90
Query: 445 HVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKC 504
H P ++ +LLS+++L +T + V + + G ++ + Y + +
Sbjct: 91 HTPNIAYDLLSLNELAA---VDITACFTKNVLER-SDGTVLAPIVKYGDFYWVSKKYLLP 146
Query: 505 HQTS---------SESWNTSQIWLRHKRLGHPPFSILRTMFPH----LFSKVSVE----- 546
S SES H+ L H +R + F++ V+
Sbjct: 147 SNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAI 206
Query: 547 SFHCDVCQFSK-----HHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFID 601
+ C C K H + + L N +PF +H+D++GP S +F++F D
Sbjct: 207 DYQCPDCLIGKSTKHRHIKGSRLKYQNSY-EPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 602 DCTRITWVFLMKDKSE--VFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTK 659
+ T+ WV+ + D+ E + +F I+ QF + ++ D G E N+ +FL K
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 660 NGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPS 719
NG+ T + +GVAER NR LL+ R L +P W A+ + + N L S
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLAS 385
Query: 720 RVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYAS 779
+ + + I + L FG V+ H + K+ PR I + +
Sbjct: 386 PKSKKSAR---QHAGLAGLDISTLLP---FGQPVIVNDH-NPNSKIHPRGIPGYALHPSR 438
Query: 780 DKKGYKCYHPPSRRV-----YISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQ 834
+ GY Y P ++ Y+ + + F + D + S I +
Sbjct: 439 NSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNE 498
Query: 835 EPLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDNGPEL-VPDQNNVDRFRI 893
+ S + +SD D ++ + N L D P D V + I
Sbjct: 499 ---IQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNI 555
Query: 894 KYQRKVKPVLIQQQDQPSDPEVSVP 918
+ R+V P + + PS S P
Sbjct: 556 RAPREVDPNISESNILPSKKRSSTP 580
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 146 bits (369), Expect = 4e-34
Identities = 138/532 (25%), Positives = 274/532 (50%), Gaps = 55/532 (10%)
Query: 979 QEVLKDKKWIQAMNEEMHALDKNGTRKIVE-----KPNDKRTVGCKWIYTVKYRSDGTLD 1033
+++ + +K+I+A ++E++ L K T E + + KR + +I+ K DGT
Sbjct: 1242 KDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK--RDGT-- 1297
Query: 1034 RYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR-----IILSLAAHFDWELQQFDVKNAF 1088
+KAR VA+G I + +T+ + NTV LSLA ++ + Q D+ +A+
Sbjct: 1298 -HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 1351
Query: 1089 LHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMV-SLGYKQS 1147
L+ D++EE+Y+ PP +K+ +LKK+LYGLKQS W+ + ++ G ++
Sbjct: 1352 LYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEV 1408
Query: 1148 QGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMK--DLG----K 1201
+G +F +N ++T+ L +V+DM++ + + + ++L +Q++ K +LG +
Sbjct: 1409 RGWSCVF----KNSQVTICL-FVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEE 1463
Query: 1202 LKY-FLGMEVAYS-----KQGIFISQRKYVLDL---LKETGKLGCKP--MGVPIEQNHKI 1250
++Y LG+E+ Y K G+ S + + L L G+ P G+ I+Q ++
Sbjct: 1464 IQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ-QEL 1522
Query: 1251 GSSEEDLRVHKAQYQRLVGKLIYLSHT-RPDIAYPVSVVSQFMHDPQERHLQAVDRILQY 1309
E+D ++ + Q+L+G Y+ + R D+ Y ++ ++Q + P ++ L ++Q+
Sbjct: 1523 ELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQF 1582
Query: 1310 LKASPGRGLLFKKSEQL----SMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQ 1365
+ + + L++ KS+ + + V +DA Y G+ +S G L G ++ +S K
Sbjct: 1583 IWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKA 1641
Query: 1366 NVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAIS-IAHNPVQH 1424
++ S+ EAE A+++ V L + ++ +L K L D+KS IS I N +
Sbjct: 1642 SLTCTSTTEAEIHAISESVPLLNNLSYLIQELD-KKPITKGLLTDSKSTISIIISNNEEK 1700
Query: 1425 DRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCK 1476
R + ++++++ + + Y+ + +ADV+TK LP++ F+ LT K
Sbjct: 1701 FRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 96.3 bits (238), Expect = 6e-19
Identities = 144/663 (21%), Positives = 252/663 (37%), Gaps = 75/663 (11%)
Query: 295 KLYGRENVLARMSKSKGAPQRRANHTASDMENDGEVPPVPPAEDVPSLSKAELERLRVFM 354
K+ R SKSK A RA H S N P+ D S+SK+ E +++
Sbjct: 381 KVIARNPQKTNNSKSKTA---RA-HNVSTSNNS-------PSTDNDSISKSTTEPIQL-- 427
Query: 355 DSLSKPSGSCSLTMTGKSSTFLSLNALSTEND-----WIIDFGATDHMTPHPSHLSSYST 409
+ + G+ T ++N + +D ++D GA+ + H+ S S+
Sbjct: 428 -------NNKHDLILGQKLTESTVNHTNHSDDELPGHLLLDSGASRTLIRSAHHIHSASS 480
Query: 410 YPGKHYITVANGSQNQITGCGNI--HLSPSLPLK-RVLHVPKLSNNLLSIHKLTRDLNCA 466
P + + A I G++ H + +VLH P ++ +LLS+++L
Sbjct: 481 NPDINVVD-AQKRNIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELAA---VD 536
Query: 467 VTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTS---------SESWNTSQI 517
+T + V + + G ++ + Y + + S SES
Sbjct: 537 ITACFTKNVLER-SDGTVLAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPY 595
Query: 518 WLRHKRLGHPPFSILRTMFPH----LFSKVSVE-----SFHCDVCQFSK-----HHRSTF 563
H+ L H +R + F++ V+ + C C K H + +
Sbjct: 596 PFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSR 655
Query: 564 LPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSE--VFQL 621
L N +PF +H+D++GP S +F++F D+ T+ WV+ + D+ E + +
Sbjct: 656 LKYQNSY-EPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDV 714
Query: 622 FANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERK 681
F I+ QF + ++ D G E N+ +FL KNG+ T + +GVAER
Sbjct: 715 FTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERL 774
Query: 682 NRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIK 741
NR LL+ R L +P W A+ + + N L S + + + I
Sbjct: 775 NRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSAR---QHAGLAGLDIS 831
Query: 742 SGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRV-----YI 796
+ L FG V+ H + K+ PR I + + + GY Y P ++ Y+
Sbjct: 832 TLLP---FGQPVIVNDH-NPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYV 887
Query: 797 SMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQEPLMPSSIPITEDSDDDDNGPE 856
+ + F + D + S I + + S + +SD D
Sbjct: 888 ILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNE---IQQSDDLNIESDHDFQSDI 944
Query: 857 QVPNQNDDNGLELVPDQNDDNGPEL-VPDQNNVDRFRIKYQRKVKPVLIQQQDQPSDPEV 915
++ + N L D P D V + I+ R+V P + + PS
Sbjct: 945 ELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRS 1004
Query: 916 SVP 918
S P
Sbjct: 1005 STP 1007
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 145 bits (366), Expect = 8e-34
Identities = 139/535 (25%), Positives = 273/535 (50%), Gaps = 61/535 (11%)
Query: 979 QEVLKDKKWIQAMNEEMHAL--------DKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDG 1030
+++ + +K+I+A ++E++ L DK RK ++ KR + +I+ K DG
Sbjct: 815 KDIKEKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDP---KRVINSMFIFNRK--RDG 869
Query: 1031 TLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR-----IILSLAAHFDWELQQFDVK 1085
T +KAR VA+G I + +T+ + NTV LSLA ++ + Q D+
Sbjct: 870 T---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDIS 921
Query: 1086 NAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMV-SLGY 1144
+A+L+ D++EE+Y+ PP +K+ +LKK+LYGLKQS W+ + ++ G
Sbjct: 922 SAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGM 978
Query: 1145 KQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMK--DLG-- 1200
++ +G +F N ++T+ L +V+DM++ + + + +L +Q++ K +LG
Sbjct: 979 EEVRGWSCVF----ENSQVTICL-FVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGES 1033
Query: 1201 --KLKY-FLGMEVAYS-----KQGIFISQRKYVLDL---LKETGKLGCKP--MGVPIEQN 1247
+++Y LG+E+ Y K G+ S + + L L G+ P G+ I+Q
Sbjct: 1034 DEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ- 1092
Query: 1248 HKIGSSEEDLRVHKAQYQRLVGKLIYLSHT-RPDIAYPVSVVSQFMHDPQERHLQAVDRI 1306
++ E+D ++ + Q+L+G Y+ + R D+ Y ++ ++Q + P ++ L +
Sbjct: 1093 QELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYEL 1152
Query: 1307 LQYLKASPGRGLLFKKSEQL----SMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRS 1362
+Q++ + + L++ KS+ + + V +DA Y G+ +S G L G ++ +S
Sbjct: 1153 IQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKS 1211
Query: 1363 KKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAIS-IAHNP 1421
K ++ S+ EAE A+++ V L + ++ +L K L D+KS IS I N
Sbjct: 1212 TKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELD-KKPITKGLLTDSKSTISIIISNN 1270
Query: 1422 VQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCK 1476
+ R + ++++++ + + Y+ + +ADV+TK LP++ F+ LT K
Sbjct: 1271 EEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 93.6 bits (231), Expect = 4e-18
Identities = 122/565 (21%), Positives = 216/565 (37%), Gaps = 50/565 (8%)
Query: 388 IIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNI--HLSPSLPLK-RVL 444
++D GA+ + H+ S S+ P + + A I G++ H + +VL
Sbjct: 32 LLDSGASRTLIRSAHHIHSASSNPDINVVD-AQKRNIPINAIGDLQFHFQDNTKTSIKVL 90
Query: 445 HVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKC 504
H P ++ +LLS+++L +T + V + + G ++ + Y + +
Sbjct: 91 HTPNIAYDLLSLNELAA---VDITACFTKNVLER-SDGTVLAPIVKYGDFYWVSKKYLLP 146
Query: 505 HQTS---------SESWNTSQIWLRHKRLGHPPFSILRTMFPH----LFSKVSVE----- 546
S SES H+ L H +R + F++ V+
Sbjct: 147 SNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAI 206
Query: 547 SFHCDVCQFSK-----HHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFID 601
+ C C K H + + L N +PF +H+D++GP S +F++F D
Sbjct: 207 DYQCPDCLIGKSTKHRHIKGSRLKYQNSY-EPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 602 DCTRITWVFLMKDKSE--VFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTK 659
+ T+ WV+ + D+ E + +F I+ QF + ++ D G E N+ +FL K
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 660 NGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPS 719
NG+ T + +GVAER NR LL+ R L +P W A+ + + N L S
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLAS 385
Query: 720 RVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYAS 779
+ + + I + L FG V+ H + K+ PR I + +
Sbjct: 386 PKSKKSAR---QHAGLAGLDISTLLP---FGQPVIVNDH-NPNSKIHPRGIPGYALHPSR 438
Query: 780 DKKGYKCYHPPSRRV-----YISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQ 834
+ GY Y P ++ Y+ + + F + D + S I +
Sbjct: 439 NSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYHSFIASNE 498
Query: 835 EPLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDNGPEL-VPDQNNVDRFRI 893
+ S + +SD D ++ + N L D P D V + I
Sbjct: 499 ---IQQSNDLNIESDHDFQSDIELHPEQLRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNI 555
Query: 894 KYQRKVKPVLIQQQDQPSDPEVSVP 918
+ R+V P + + PS S P
Sbjct: 556 RAPREVDPNISESNILPSKKRSSTP 580
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 140 bits (352), Expect = 3e-32
Identities = 141/536 (26%), Positives = 269/536 (49%), Gaps = 63/536 (11%)
Query: 979 QEVLKDKKWIQAMNEEMHAL--------DKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDG 1030
+++ + +K+I+A ++E++ L DK RK ++ KR + +I+ K DG
Sbjct: 815 KDIKEKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDP---KRVINSMFIFNRK--RDG 869
Query: 1031 TLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR-----IILSLAAHFDWELQQFDVK 1085
T +KAR VA+G I + +T+ + NTV LSLA ++ + Q D+
Sbjct: 870 T---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDIS 921
Query: 1086 NAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMV-SLGY 1144
+A+L+ D++EE+Y+ PP +K+ +LKK+LYGLKQS W+ + ++ G
Sbjct: 922 SAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGM 978
Query: 1145 KQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMK--DLG-- 1200
++ +G +F +N ++T+ L +V+DMI+ D + + L Q++ K +LG
Sbjct: 979 EEVRGWSCVF----KNSQVTICL-FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGES 1033
Query: 1201 --KLKY-FLGMEVAYS-----KQGIFISQRKYVLDL---LKETGKLGCKP--MGVPIEQN 1247
+++Y LG+E+ Y K G+ S + + L L G+ P G+ I+Q+
Sbjct: 1034 DNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQD 1093
Query: 1248 H-KIGSSEEDLRVHKAQYQRLVGKLIYLSHT-RPDIAYPVSVVSQFMHDPQERHLQAVDR 1305
+I E +VH + Q+L+G Y+ + R D+ Y ++ ++Q + P + L
Sbjct: 1094 ELEIDEDEYKEKVH--EMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYE 1151
Query: 1306 ILQYLKASPGRGLLFKKSEQL----SMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWR 1361
++Q++ + + L++ K++ + +DA Y G+ +S G L G ++ +
Sbjct: 1152 LIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGK 1210
Query: 1362 SKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAIS-IAHN 1420
S K ++ S+ EAE A+++ V L + ++ +L K L D+KS IS I N
Sbjct: 1211 STKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELN-KKPITKGLLTDSKSTISIIISN 1269
Query: 1421 PVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCK 1476
+ R + ++++++ + + Y+ + +ADV+TK LP++ F+ LT K
Sbjct: 1270 NEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 95.1 bits (235), Expect = 1e-18
Identities = 122/565 (21%), Positives = 216/565 (37%), Gaps = 50/565 (8%)
Query: 388 IIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNI--HLSPSLPLK-RVL 444
++D GA+ + H+ S S+ P + + A I G++ H + +VL
Sbjct: 32 LLDSGASRTLIRSAHHIHSASSNPDINVVD-AQKRNIPINAIGDLQFHFQDNTKTSIKVL 90
Query: 445 HVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKC 504
H P ++ +LLS+++L +T + V + + G ++ + Y + +
Sbjct: 91 HTPNIAYDLLSLNELAA---VDITACFTKNVLER-SDGTVLAPIVKYGDFYWVSKKYLLP 146
Query: 505 HQTS---------SESWNTSQIWLRHKRLGHPPFSILRTMFPH----LFSKVSVE----- 546
S SES H+ L H +R + F++ V+
Sbjct: 147 SNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAI 206
Query: 547 SFHCDVCQFSK-----HHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFID 601
+ C C K H + + L N +PF +H+D++GP S +F++F D
Sbjct: 207 DYQCPDCLIGKSTKHRHIKGSRLKYQNSY-EPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 602 DCTRITWVFLMKDKSE--VFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTK 659
+ T+ WV+ + D+ E + +F I+ QF + ++ D G E N+ +FL K
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 660 NGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPS 719
NG+ T + +GVAER NR LL+ R L +P W A+ + + N L S
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLAS 385
Query: 720 RVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYAS 779
+ + + I + L FG V+ H + K+ PR I + +
Sbjct: 386 PKSKKSAR---QHAGLAGLDISTLLP---FGQPVIVNDH-NPNSKIHPRGIPGYALHPSR 438
Query: 780 DKKGYKCYHPPSRRV-----YISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQ 834
+ GY Y P ++ Y+ + + F + D + S I +
Sbjct: 439 NSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNE 498
Query: 835 EPLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDNGPEL-VPDQNNVDRFRI 893
+ S + +SD D ++ + N L D P D V + I
Sbjct: 499 ---IQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNI 555
Query: 894 KYQRKVKPVLIQQQDQPSDPEVSVP 918
+ R+V P + + PS S P
Sbjct: 556 RAPREVDPNISESNILPSKKRSSTP 580
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 138 bits (348), Expect = 1e-31
Identities = 138/533 (25%), Positives = 268/533 (49%), Gaps = 57/533 (10%)
Query: 979 QEVLKDKKWIQAMNEEMHALDKNGTRKIVE-----KPNDKRTVGCKWIYTVKYRSDGTLD 1033
+++ + +K+I+A ++E++ L K T E + + KR + +I+ K DGT
Sbjct: 815 KDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK--RDGT-- 870
Query: 1034 RYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR-----IILSLAAHFDWELQQFDVKNAF 1088
+KAR VA+G I + +T+ + NTV LSLA ++ + Q D+ +A+
Sbjct: 871 -HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 1089 LHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMV-SLGYKQS 1147
L+ D++EE+Y+ PP +K+ +LKK+LYGLKQS W+ + ++ G ++
Sbjct: 925 LYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1148 QGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMK--DLG----K 1201
+G +F +N ++T+ L +V+DMI+ D + + L Q++ K +LG +
Sbjct: 982 RGWSCVF----KNSQVTICL-FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNE 1036
Query: 1202 LKY-FLGMEVAYS-----KQGIFISQRKYVLDL---LKETGKLGCKP--MGVPIEQNH-K 1249
++Y LG+E+ Y K G+ S + + L L G+ P G+ I+Q+ +
Sbjct: 1037 IQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELE 1096
Query: 1250 IGSSEEDLRVHKAQYQRLVGKLIYLSHT-RPDIAYPVSVVSQFMHDPQERHLQAVDRILQ 1308
I E +VH + Q+L+G Y+ + R D+ Y ++ ++Q + P + L ++Q
Sbjct: 1097 IDEDEYKEKVH--EMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQ 1154
Query: 1309 YLKASPGRGLLFKKSEQL----SMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKK 1364
++ + + L++ K++ + +DA Y G+ +S G L G ++ +S K
Sbjct: 1155 FMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTK 1213
Query: 1365 QNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQH 1424
++ S+ EAE A+++ V L + ++ +L K L D++S ISI + +
Sbjct: 1214 ASLTCTSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKSTNEE 1272
Query: 1425 D-RTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCK 1476
R + ++++++ + + Y+ + +ADV+TK LP++ F+ LT K
Sbjct: 1273 KFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 95.1 bits (235), Expect = 1e-18
Identities = 122/565 (21%), Positives = 216/565 (37%), Gaps = 50/565 (8%)
Query: 388 IIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNI--HLSPSLPLK-RVL 444
++D GA+ + H+ S S+ P + + A I G++ H + +VL
Sbjct: 32 LLDSGASRTLIRSAHHIHSASSNPDINVVD-AQKRNIPINAIGDLQFHFQDNTKTSIKVL 90
Query: 445 HVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKC 504
H P ++ +LLS+++L +T + V + + G ++ + Y + +
Sbjct: 91 HTPNIAYDLLSLNELAA---VDITACFTKNVLER-SDGTVLAPIVKYGDFYWVSKKYLLP 146
Query: 505 HQTS---------SESWNTSQIWLRHKRLGHPPFSILRTMFPH----LFSKVSVE----- 546
S SES H+ L H +R + F++ V+
Sbjct: 147 SNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAI 206
Query: 547 SFHCDVCQFSK-----HHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFID 601
+ C C K H + + L N +PF +H+D++GP S +F++F D
Sbjct: 207 DYQCPDCLIGKSTKHRHIKGSRLKYQNSY-EPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 602 DCTRITWVFLMKDKSE--VFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTK 659
+ T+ WV+ + D+ E + +F I+ QF + ++ D G E N+ +FL K
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 660 NGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPS 719
NG+ T + +GVAER NR LL+ R L +P W A+ + + N L S
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLAS 385
Query: 720 RVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYAS 779
+ + + I + L FG V+ H + K+ PR I + +
Sbjct: 386 PKSKKSAR---QHAGLAGLDISTLLP---FGQPVIVNDH-NPNSKIHPRGIPGYALHPSR 438
Query: 780 DKKGYKCYHPPSRRV-----YISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQ 834
+ GY Y P ++ Y+ + + F + D + S I +
Sbjct: 439 NSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNE 498
Query: 835 EPLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDNGPEL-VPDQNNVDRFRI 893
+ S + +SD D ++ + N L D P D V + I
Sbjct: 499 ---IQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNI 555
Query: 894 KYQRKVKPVLIQQQDQPSDPEVSVP 918
+ R+V P + + PS S P
Sbjct: 556 RAPREVDPNISESNILPSKKRSSTP 580
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 136 bits (342), Expect = 5e-31
Identities = 137/533 (25%), Positives = 267/533 (49%), Gaps = 57/533 (10%)
Query: 979 QEVLKDKKWIQAMNEEMHALDKNGTRKIVE-----KPNDKRTVGCKWIYTVKYRSDGTLD 1033
+++ + +K+I+A ++E++ L K T E + + KR + +I+ K DGT
Sbjct: 1242 KDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK--RDGT-- 1297
Query: 1034 RYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR-----IILSLAAHFDWELQQFDVKNAF 1088
+KAR VA+G I + +T+ + NTV LSLA ++ + Q D+ +A+
Sbjct: 1298 -HKARFVARG-----DIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 1351
Query: 1089 LHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMV-SLGYKQS 1147
L+ D++EE+Y+ PP +K+ +LKK+ YGLKQS W+ + ++ G ++
Sbjct: 1352 LYADIKEELYIRPPP---HLGMNDKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEV 1408
Query: 1148 QGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMK--DLG----K 1201
+G +F +N ++T+ L +V+DMI+ D + + L Q++ K +LG +
Sbjct: 1409 RGWSCVF----KNSQVTICL-FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNE 1463
Query: 1202 LKY-FLGMEVAYS-----KQGIFISQRKYVLDL---LKETGKLGCKP--MGVPIEQNH-K 1249
++Y LG+E+ Y K G+ S + + L L G+ P G+ I+Q+ +
Sbjct: 1464 IQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELE 1523
Query: 1250 IGSSEEDLRVHKAQYQRLVGKLIYLSHT-RPDIAYPVSVVSQFMHDPQERHLQAVDRILQ 1308
I E +VH + Q+L+G Y+ + R D+ Y ++ ++Q + P + L ++Q
Sbjct: 1524 IDEDEYKEKVH--EMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQ 1581
Query: 1309 YLKASPGRGLLFKKSEQL----SMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKK 1364
++ + + L++ K++ + +DA Y G+ +S G L G ++ +S K
Sbjct: 1582 FMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTK 1640
Query: 1365 QNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQH 1424
++ S+ EAE A+++ V L + ++ +L K L D++S ISI + +
Sbjct: 1641 ASLTCTSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKSTNEE 1699
Query: 1425 D-RTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCK 1476
R + ++++++ + + Y+ + +ADV+TK LP++ F+ LT K
Sbjct: 1700 KFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 98.6 bits (244), Expect = 1e-19
Identities = 146/663 (22%), Positives = 253/663 (38%), Gaps = 75/663 (11%)
Query: 295 KLYGRENVLARMSKSKGAPQRRANHTASDMENDGEVPPVPPAEDVPSLSKAELERLRVFM 354
K+ R SKSK A RA H S N P+ D S+SK+ E +++
Sbjct: 381 KVIARNPQKTNNSKSKTA---RA-HNVSTSNNS-------PSTDNDSISKSTTEPIQL-- 427
Query: 355 DSLSKPSGSCSLTMTGKSSTFLSLNALSTEND-----WIIDFGATDHMTPHPSHLSSYST 409
+ LT+ G+ T ++N + +D ++D GA+ + H+ S S+
Sbjct: 428 ------NNKHDLTL-GQELTESTVNHTNHSDDELPGHLLLDSGASRTLIRSAHHIHSASS 480
Query: 410 YPGKHYITVANGSQNQITGCGNI--HLSPSLPLK-RVLHVPKLSNNLLSIHKLTRDLNCA 466
P + + A I G++ H + +VLH P ++ +LLS+++L
Sbjct: 481 NPDINVVD-AQKRNIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELAA---VD 536
Query: 467 VTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTS---------SESWNTSQI 517
+T + V + + G ++ + Y + S SES
Sbjct: 537 ITACFTKNVLER-SDGTVLAPIVQYGDFYWVSKRYLLPSNISVPTINNVHTSESTRKYPY 595
Query: 518 WLRHKRLGHPPFSILRTMFPH----LFSKVSVE-----SFHCDVCQFSK-----HHRSTF 563
H+ L H +R + F++ V+ + C C K H + +
Sbjct: 596 PFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSR 655
Query: 564 LPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSE--VFQL 621
L N +PF +H+D++GP S +F++F D+ T+ WV+ + D+ E + +
Sbjct: 656 LKYQNSY-EPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDV 714
Query: 622 FANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERK 681
F I+ QF + ++ D G E N+ +FL KNG+ T + +GVAER
Sbjct: 715 FTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERL 774
Query: 682 NRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIK 741
NR LL+ R L +P W A+ + + N L S + + + I
Sbjct: 775 NRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSAR---QHAGLAGLDIS 831
Query: 742 SGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRV-----YI 796
+ L FG V+ H + K+ PR I + + + GY Y P ++ Y+
Sbjct: 832 TLLP---FGQPVIVNDH-NPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYV 887
Query: 797 SMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQEPLMPSSIPITEDSDDDDNGPE 856
+ + F + D + S I + + S + +SD D
Sbjct: 888 ILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNE---IQESNDLNIESDHDFQSDI 944
Query: 857 QVPNQNDDNGLELVPDQNDDNGPEL-VPDQNNVDRFRIKYQRKVKPVLIQQQDQPSDPEV 915
++ + N L D P D V + I+ R+V P + + PS
Sbjct: 945 ELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRS 1004
Query: 916 SVP 918
S P
Sbjct: 1005 STP 1007
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 131 bits (329), Expect = 2e-29
Identities = 136/555 (24%), Positives = 270/555 (48%), Gaps = 68/555 (12%)
Query: 966 ISAIDSIRVPTSVQEVL---KDKK----WIQAMNEEMHALDKNGT---RKIVEKPND--- 1012
+ +I +R E + KD K +++A ++E+ L K T K ++ ND
Sbjct: 1237 VKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDR-NDIDP 1295
Query: 1013 KRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR-----I 1067
K+ + +I+ K DGT +KAR VA+G I + +T+ + NTV
Sbjct: 1296 KKVINSMFIFNKK--RDGT---HKARFVARG-----DIQHPDTYDSDMQSNTVHHYALMT 1345
Query: 1068 ILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQS 1127
LS+A D+ + Q D+ +A+L+ D++EE+Y+ PP +K+ +L+K+LYGLKQS
Sbjct: 1346 SLSIALDNDYYITQLDISSAYLYADIKEELYIRPPP---HLGLNDKLLRLRKSLYGLKQS 1402
Query: 1128 PRAWFGRFTNAMVS-LGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNL 1186
W+ + +++ ++ +G +F +N ++T+ L +V+DMI+ D + +
Sbjct: 1403 GANWYETIKSYLINCCDMQEVRGWSCVF----KNSQVTICL-FVDDMILFSKDLNANKKI 1457
Query: 1187 RKELAVQFEMK--DLG----KLKY-FLGMEVAYSKQGIF-ISQRKYVLDLLKETGKLGCK 1238
L Q++ K +LG +++Y LG+E+ Y + + K + + L + +
Sbjct: 1458 ITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKL-NVPLN 1516
Query: 1239 PMG----VPIEQNHKIGSSEEDL-------RVHKAQYQRLVGKLIYLSHT-RPDIAYPVS 1286
P G P + H I E ++ +VH + Q+L+G Y+ + R D+ Y ++
Sbjct: 1517 PKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVH--EMQKLIGLASYVGYKFRFDLLYYIN 1574
Query: 1287 VVSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQL----SMEVYTDADYAGSIVD 1342
++Q + P + L ++Q++ + + L++ K++ + +DA Y G+
Sbjct: 1575 TLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQPY 1633
Query: 1343 RRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYE 1402
+S G L G ++ +S K ++ S+ EAE A+++ + L + ++ +L K
Sbjct: 1634 YKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELN-KKP 1692
Query: 1403 APMRLFCDNKSAISIAHNPVQHD-RTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVL 1461
L D++S ISI + + R + ++++++ + + Y+ + +ADV+
Sbjct: 1693 IIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVM 1752
Query: 1462 TKGLPLERFRELTCK 1476
TK LP++ F+ LT K
Sbjct: 1753 TKPLPIKTFKLLTNK 1767
Score = 102 bits (253), Expect = 1e-20
Identities = 90/358 (25%), Positives = 152/358 (42%), Gaps = 30/358 (8%)
Query: 388 IIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHLSPSLPLK---RVL 444
+ID GA+ + +H ++T + I A I GN+H + K + L
Sbjct: 455 LIDSGASQTLV-RSAHYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKAL 513
Query: 445 HVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGL-----YCLQH 499
H P ++ +LLS+ +L N +T + + + I K D Y +
Sbjct: 514 HTPNIAYDLLSLSELA---NQNITACFTRNTLERSDGTVLAPIVKHGDFYWLSKKYLIPS 570
Query: 500 EESKC---HQTSSESWNTSQIWLRHKRLGHPPF-SILRTMFPHLFSKV--------SVES 547
SK + S+S N L H+ LGH F SI +++ + + + + +
Sbjct: 571 HISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNAST 630
Query: 548 FHCDVCQFSKHHRSTFLPSNN----KCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDC 603
+ C C K + + + + +PF +H+D++GP S +F++F D+
Sbjct: 631 YQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEK 690
Query: 604 TRITWVFLMKDKSE--VFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNG 661
TR WV+ + D+ E + +F + I+ QF + ++ D G E NK +F T G
Sbjct: 691 TRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRG 750
Query: 662 VVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPS 719
+ T + +GVAER NR LL R LL +P W AV + + N L S
Sbjct: 751 ITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 101 bits (251), Expect = 2e-20
Identities = 50/102 (49%), Positives = 67/102 (65%)
Query: 975 PTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDR 1034
P SV LKD W QAM EE+ AL +N T +V P ++ +GCKW++ K SDGTLDR
Sbjct: 28 PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87
Query: 1035 YKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFD 1076
KARLVAKG+ Q GI + ET++PV + T+R IL++A +
Sbjct: 88 LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLE 129
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 66.2 bits (160), Expect = 6e-10
Identities = 29/79 (36%), Positives = 50/79 (62%)
Query: 1272 IYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVY 1331
+YL+ TRPD+ + V+ +SQF + +QAV ++L Y+K + G+GL + + L ++ +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1332 TDADYAGSIVDRRSTTGYC 1350
D+D+A RRS TG+C
Sbjct: 61 ADSDWASCPDTRRSVTGFC 79
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 52.8 bits (125), Expect = 7e-06
Identities = 35/90 (38%), Positives = 51/90 (55%), Gaps = 8/90 (8%)
Query: 682 NRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIK 741
NR ++E R++L + +PK + +A TA ++IN+ PS ++ P V +F SVP
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEV---WFQSVPTY 58
Query: 742 SGLQSRVFGCSAFVHVHGHHRGKLDPRAIK 771
S L R FGC A++H GKL PRA K
Sbjct: 59 SYL--RRFGCVAYIHC---DEGKLKPRAKK 83
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 49.3 bits (116), Expect = 8e-05
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 472 SHGVFQDLATGQIIGIAKEQDGLYCLQHE----ESKCHQTSSESWNTSQIWLRHKRLGHP 527
S GV + L + I D LY LQ ES +T+ + +++W H RL H
Sbjct: 25 SEGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDE---TRLW--HSRLAHM 79
Query: 528 PFSILRTMFPHLF---SKVSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGP 584
+ + F SKVS F C+ C + K HR F + P D VHSD+WG
Sbjct: 80 SQRGMELLVKKGFLDSSKVSSLKF-CEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGA 138
Query: 585 SSI 587
S+
Sbjct: 139 PSV 141
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 48.5 bits (114), Expect = 1e-04
Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 13/212 (6%)
Query: 550 CDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWV 609
C VCQ + +T +P + V+ ++ + +G K+ + F+D T WV
Sbjct: 737 CKVCQ-QVNAGATRVPEGKRTRGNRPGVYWEIDFTEVKPHYAGYKYLLVFVD--TFSGWV 793
Query: 610 FLMKDKSEVFQLFAN-FFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTC 668
+ E + A I +FG P K + SDNG V++ G+ +L C
Sbjct: 794 EAYPTRQETAHMVAKKILEEIFPRFGLP-KVIGSDNGPAFVSQVSQGLARTLGINWKLHC 852
Query: 669 VDAPQQNGVAERKNRHLLEITRALLFQMNVPKF--YWGEAVLTAAYLINRL---PSRVLS 723
PQ +G ER NR + E L + + + A+L A NR P +L
Sbjct: 853 AYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNTPNRFGLTPYEILY 912
Query: 724 NVSPVL--VMTSFFPSVPIKSGLQSRVFGCSA 753
P L ++ SF PS P K+ LQ+R+ G A
Sbjct: 913 GGPPPLSTLLNSFSPSDP-KTDLQARLKGLQA 943
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 45.8 bits (107), Expect = 9e-04
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Query: 535 MFPHLFSKVSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAK 594
+ P + + + C VCQ + +T +P+ + V+ ++ + +G K
Sbjct: 865 LIPRASTLIEQVTSACKVCQ-QVNAGATRVPAGKRTRGNRPGVYWEIDFTEVKPHYAGYK 923
Query: 595 WFVTFIDDCTRITWVFLMKDKSEVFQLFAN-FFHMIRTQFGKPIKRLRSDNGKE*VNKNF 653
+ + F+D T WV + E + A I +FG P K + SDNG V++
Sbjct: 924 YLLVFVD--TFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLP-KVIGSDNGPAFVSQVS 980
Query: 654 SEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKF--YWGEAVLTAA 711
G+ +L C PQ +G ER NR + E L + + + A+L A
Sbjct: 981 QGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRAR 1040
Query: 712 YLINRL---PSRVLSNVSPVL--VMTSFFPSVPIKSGLQSRVFGCSA 753
NR P +L P L ++ SF PS K+ LQ+R+ G A
Sbjct: 1041 NTPNRFGLTPYEILYGGPPPLSTLLNSFSPS-NSKTDLQARLKGLQA 1086
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 42.4 bits (98), Expect = 0.010
Identities = 36/125 (28%), Positives = 55/125 (43%), Gaps = 6/125 (4%)
Query: 569 KCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHM 628
K +PFD + D GP SN G + +D T W++ K S + A +M
Sbjct: 879 KPLKPFDKFYIDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATVKA--LNM 934
Query: 629 IRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEI 688
+ T P K L SD G + F+++ + G+ E + PQ +G ERKN + +
Sbjct: 935 L-TSIAIP-KVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRL 992
Query: 689 TRALL 693
LL
Sbjct: 993 LTKLL 997
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 40.4 bits (93), Expect = 0.037
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 592 GAKWFVTFIDDCTRITWVFLMKDKSEVFQLFAN-FFHMIRTQFGKPIKRLRSDNGKE*VN 650
G K+ + FID T WV K+E + I +FG P K L SDNG V
Sbjct: 893 GNKYLLVFID--TFSGWVEAFPTKTETALIVCKKILEEILPRFGIP-KVLGSDNGPAFVA 949
Query: 651 KNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQ 695
+ T+ G+ +L C PQ +G ER NR + E L +
Sbjct: 950 QVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALE 994
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,780,646
Number of Sequences: 164201
Number of extensions: 8218306
Number of successful extensions: 20648
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 20416
Number of HSP's gapped (non-prelim): 181
length of query: 1485
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1362
effective length of database: 39,777,331
effective search space: 54176724822
effective search space used: 54176724822
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0310b.12