BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0306.5
         (165 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p...    95  8e-20
BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog      90  3e-18
GIS2_YEAST (P53849) Zinc-finger protein GIS2                           82  6e-16
CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)...    77  2e-14
CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP)       75  9e-14
CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP) (...    72  7e-13
CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)...    72  7e-13
GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-...    66  4e-11
GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-...    65  5e-11
GAG_EIAVY (P03351) Gag polyprotein [Contains: Core protein p15; ...    59  7e-09
GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-...    57  2e-08
YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I      53  3e-07
GRP2_NICSY (P27484) Glycine-rich protein 2                             52  5e-07
ZCH9_HUMAN (Q8N567) Zinc finger CCHC domain containing protein 9       51  1e-06
GR2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)                  51  1e-06
GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17; ...    49  5e-06
GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix prote...    49  5e-06
GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix prote...    49  5e-06
GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; ...    49  7e-06
GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; ...    49  7e-06

>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding
           protein)
          Length = 271

 Score = 94.7 bits (234), Expect = 8e-20
 Identities = 53/182 (29%), Positives = 75/182 (41%), Gaps = 47/182 (25%)

Query: 16  VTCFCCGKFGQFANNC-------SVIGPRCFKCNREGHLAVNCKTLQGGP---------- 58
           +TCF CG+ G  + +C       +  G  C+KC +EGHL+ +C + QGG           
Sbjct: 70  MTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGR 129

Query: 59  ----------------SDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDG--- 99
                            D+     D   G G  +     TCY+C   GH +  CP+G   
Sbjct: 130 SGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGG 189

Query: 100 -----GPLCFNCGEIGHYASKCKIKG------RLCFNCNQPGHFSRDCKAPKGESSGNTG 148
                   C+ CGE GH + +C   G      R C+ C +PGH SR+C    G   G+ G
Sbjct: 190 YSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRG 249

Query: 149 KG 150
            G
Sbjct: 250 GG 251



 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 46/147 (31%), Positives = 65/147 (43%), Gaps = 42/147 (28%)

Query: 15  DVTCFCCGKFGQFANNC-------SVIGPR-CFKCNREGHLAVNCKTLQGGPSDSKMKGN 66
           D TC+ CG  G  + +C       S  G R C+KC   GH++ +C   QGG S       
Sbjct: 139 DRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYS------- 191

Query: 67  DATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPL------CFNCGEIGHYASKCKIKG 120
               G G++       CY+C + GH + +CP  G        C+ CG+ GH + +C   G
Sbjct: 192 ----GAGDRK------CYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAG 241

Query: 121 -----------RLCFNCNQPGHFSRDC 136
                      R C+ C + GH SRDC
Sbjct: 242 GSYGGSRGGGDRTCYKCGEAGHISRDC 268



 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 44/126 (34%), Positives = 58/126 (45%), Gaps = 32/126 (25%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
           C  C +EGH A  C       +DSK          G++ S    TC+RC + GH + +CP
Sbjct: 18  CRNCGKEGHYARECPE-----ADSK----------GDERS---TTCFRCGEEGHMSRECP 59

Query: 98  D-------GGPLCFNCGEIGHYASKCK-------IKGRLCFNCNQPGHFSRDCKAPKGES 143
           +       G   CF CGE GH +  C         KG  C+ C Q GH SRDC + +G S
Sbjct: 60  NEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGS 119

Query: 144 SGNTGK 149
            G  G+
Sbjct: 120 RGGYGQ 125



 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 16/80 (20%)

Query: 82  TCYRCKKVGHYTNKCPDG-------GPLCFNCGEIGHYASKCKIKGR-------LCFNCN 127
           +C  C K GHY  +CP+           CF CGE GH + +C  + R        CF C 
Sbjct: 17  SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76

Query: 128 QPGHFSRDC--KAPKGESSG 145
           + GH SRDC   A  G + G
Sbjct: 77  EAGHMSRDCPNSAKPGAAKG 96



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 20/106 (18%)

Query: 12  GDKDVTCFCCGKFGQFANNC-------SVIGPR-CFKCNREGHLAVNCKTLQ-------- 55
           G  D TC+ CG  G  + +C       S  G R C+KC   GH++  C +          
Sbjct: 164 GAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRA 223

Query: 56  ----GGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
               G P     +  +A G  G    G   TCY+C + GH +  CP
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCP 269


>BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog
          Length = 179

 Score = 89.7 bits (221), Expect = 3e-18
 Identities = 45/133 (33%), Positives = 66/133 (48%), Gaps = 20/133 (15%)

Query: 14  KDVTCFCCGKFGQFANNCSVI-----GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDA 68
           ++ TC+ CG  G    +C        G  C+KC R GH+A +C+T           G  +
Sbjct: 56  QEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRT----------NGQQS 105

Query: 69  TGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCK--IKGRLCFNC 126
            G  G   S   + CY C   GH    C  G   C++CG+IGH + +C+    G+LC+ C
Sbjct: 106 GGRFGGHRSN--MNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQASDGQLCYKC 162

Query: 127 NQPGHFSRDCKAP 139
           NQPGH + +C +P
Sbjct: 163 NQPGHIAVNCTSP 175



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 33/121 (27%)

Query: 35  GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTN 94
           GPRC+ C   GH A  C                        T G I  CY C + GH  +
Sbjct: 16  GPRCYNCGENGHQAREC------------------------TKGSI--CYNCNQTGHKAS 49

Query: 95  KC--PDGGPLCFNCGEIGHYASKCKI-----KGRLCFNCNQPGHFSRDCKAPKGESSGNT 147
           +C  P     C+ CG  GH    C       +G  C+ C + GH +RDC+    +S G  
Sbjct: 50  ECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRF 109

Query: 148 G 148
           G
Sbjct: 110 G 110


>GIS2_YEAST (P53849) Zinc-finger protein GIS2
          Length = 153

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 38/151 (25%)

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGN-KT 76
           C+ CGK G  A +C      C+ CN+ GH+  +C      P   + K     G TG+ ++
Sbjct: 6   CYVCGKIGHLAEDCDS-ERLCYNCNKPGHVQTDCTM----PRTVEFKQCYNCGETGHVRS 60

Query: 77  SGKIVTCYRCKKVGHYTNKCPD---------------GGP----------------LCFN 105
              +  C+ C + GH + +CP+               GGP                 C+ 
Sbjct: 61  ECTVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYT 120

Query: 106 CGEIGHYASKCKIKGRLCFNCNQPGHFSRDC 136
           CG+ GH +  C+   RLC+NCN+ GH S+DC
Sbjct: 121 CGQAGHMSRDCQ-NDRLCYNCNETGHISKDC 150



 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 39/110 (35%), Positives = 49/110 (44%), Gaps = 32/110 (29%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
           C+ C + GHLA +C        DS+                    CY C K GH    C 
Sbjct: 6   CYVCGKIGHLAEDC--------DSER------------------LCYNCNKPGHVQTDCT 39

Query: 98  DGGPL----CFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCKAPKGES 143
               +    C+NCGE GH  S+C ++   CFNCNQ GH SR+C  PK  S
Sbjct: 40  MPRTVEFKQCYNCGETGHVRSECTVQR--CFNCNQTGHISRECPEPKKTS 87



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 5/70 (7%)

Query: 83  CYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCK----IKGRLCFNCNQPGHFSRDCKA 138
           CY C K+GH    C D   LC+NC + GH  + C     ++ + C+NC + GH   +C  
Sbjct: 6   CYVCGKIGHLAEDC-DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTV 64

Query: 139 PKGESSGNTG 148
            +  +   TG
Sbjct: 65  QRCFNCNQTG 74



 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 27/105 (25%)

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNC----KTLQ---------GGPSDSKMK 64
           C+ CG+ G   + C+V   RCF CN+ GH++  C    KT +         GGP+     
Sbjct: 49  CYNCGETGHVRSECTV--QRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKD 106

Query: 65  GNDATGGTGNK--TSGKIV----------TCYRCKKVGHYTNKCP 97
                G +G K  T G+             CY C + GH +  CP
Sbjct: 107 CMKEDGISGLKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDCP 151



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 12  GDKDVTCFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNC 51
           G   + C+ CG+ G  + +C      C+ CN  GH++ +C
Sbjct: 112 GISGLKCYTCGQAGHMSRDCQ-NDRLCYNCNETGHISKDC 150


>CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)
           (Zinc finger protein 9)
          Length = 178

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNK-----TSGKIVTCYRCKKVGHY 92
           CFKC R GH A  C T  GG     M+     G T ++     +S     CYRC + GH 
Sbjct: 6   CFKCGRSGHWARECPT--GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63

Query: 93  TNKCP-DGGPLCFNCGEIGHYASKCKIKGR----LCFNCNQPGHFSRDC 136
              C       C+NCG  GH A  CK   R     C+NC +PGH +RDC
Sbjct: 64  AKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 37/125 (29%), Positives = 54/125 (42%), Gaps = 12/125 (9%)

Query: 18  CFCCGKFGQFANNCSVIGPR-CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKT 76
           C+ CG+ G  A +C +     C+ C R GH+A +CK     P   + +     G  G+  
Sbjct: 54  CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLA 109

Query: 77  S----GKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGRL-CFNCNQPGH 131
                     CY C + GH    C      C+ CGE GH A  C     + C+ C + GH
Sbjct: 110 RDCDHADEQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGH 167

Query: 132 FSRDC 136
            +R+C
Sbjct: 168 LAREC 172



 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 42/169 (24%), Positives = 60/169 (34%), Gaps = 33/169 (19%)

Query: 18  CFCCGKFGQFANNCSVIGPR----------------------------CFKCNREGHLAV 49
           CF CG+ G +A  C   G R                            C++C   GHLA 
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65

Query: 50  NCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGG-PLCFNCGE 108
           +C   +     +  +G             +   CY C K GH    C       C++CGE
Sbjct: 66  DCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGE 125

Query: 109 IGHYASKC-KIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAE 156
            GH    C K+K   C+ C + GH + +C      +    G+   LA E
Sbjct: 126 FGHIQKDCTKVK---CYRCGETGHVAINCSKTSEVNCYRCGESGHLARE 171



 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 36/113 (31%), Positives = 52/113 (45%), Gaps = 15/113 (13%)

Query: 14  KDVTCFCCGKFGQFANNCSVIGPR------CFKCNREGHLAVNCKTLQGGPSDSKMKGND 67
           +D  C+ CG+ G  A +C    P+      C+ C + GHLA +C       +D +   + 
Sbjct: 71  EDEACYNCGRGGHIAKDCKE--PKREREQCCYNCGKPGHLARDCDH-----ADEQKCYSC 123

Query: 68  ATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPL-CFNCGEIGHYASKCKIK 119
              G   K   K V CYRC + GH    C     + C+ CGE GH A +C I+
Sbjct: 124 GEFGHIQKDCTK-VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 175


>CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP)
          Length = 172

 Score = 74.7 bits (182), Expect = 9e-14
 Identities = 40/104 (38%), Positives = 48/104 (45%), Gaps = 8/104 (7%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
           CFKC R GH A  C T  G     + +G     G    +S     CYRC + GH    C 
Sbjct: 6   CFKCGRTGHWARECPTGIGRGRGMRSRGR---AGFQFMSSSLPDICYRCGESGHLAKDCD 62

Query: 98  -DGGPLCFNCGEIGHYASKCKIKGR----LCFNCNQPGHFSRDC 136
                 C+NCG  GH A  CK   R     C+NC +PGH +RDC
Sbjct: 63  LQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106



 Score = 68.2 bits (165), Expect = 8e-12
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 27/142 (19%)

Query: 18  CFCCGKFGQFANNCSVIGPR-CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKT 76
           C+ CG+ G  A +C +   + C+ C R GH+A +CK     P   + +            
Sbjct: 48  CYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKE----PKREREQ------------ 91

Query: 77  SGKIVTCYRCKKVGHYTNKCPDGGPL-CFNCGEIGHYASKC-KIKGRLCFNCNQPGHFSR 134
                 CY C K GH    C       C++CGE GH    C K+K   C+ C + GH + 
Sbjct: 92  -----CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK---CYRCGETGHVAI 143

Query: 135 DCKAPKGESSGNTGKGKQLAAE 156
           +C      +    G+   LA E
Sbjct: 144 NCSKTSEVNCYRCGESGHLARE 165



 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 36/113 (31%), Positives = 52/113 (45%), Gaps = 15/113 (13%)

Query: 14  KDVTCFCCGKFGQFANNCSVIGPR------CFKCNREGHLAVNCKTLQGGPSDSKMKGND 67
           +D  C+ CG+ G  A +C    P+      C+ C + GHLA +C       +D +   + 
Sbjct: 65  EDKACYNCGRGGHIAKDCKE--PKREREQCCYNCGKPGHLARDCDH-----ADEQKCYSC 117

Query: 68  ATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPL-CFNCGEIGHYASKCKIK 119
              G   K   K V CYRC + GH    C     + C+ CGE GH A +C I+
Sbjct: 118 GEFGHIQKDCTK-VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 169


>CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP)
           (Zinc finger protein 9)
          Length = 177

 Score = 71.6 bits (174), Expect = 7e-13
 Identities = 40/141 (28%), Positives = 58/141 (40%), Gaps = 26/141 (18%)

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTS 77
           C+ CG+ G  A +C +    C+ C R GH+A +CK     P   + +             
Sbjct: 54  CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKE----PKREREQ------------- 96

Query: 78  GKIVTCYRCKKVGHYTNKCPDGG-PLCFNCGEIGHYASKC-KIKGRLCFNCNQPGHFSRD 135
                CY C K GH    C       C++CGE GH    C K+K   C+ C + GH + +
Sbjct: 97  ----CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK---CYRCGETGHVAIN 149

Query: 136 CKAPKGESSGNTGKGKQLAAE 156
           C      +    G+   LA E
Sbjct: 150 CSKTSEVNCYRCGESGHLARE 170



 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 20/122 (16%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
           CFKC R GH A  C T  GG     M+     G T ++    +            ++  P
Sbjct: 6   CFKCGRSGHWARECPT--GGGRGRGMRSRGRGGFTSDRGFQFV------------SSSLP 51

Query: 98  DGGPLCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCKAPKGESSG---NTGKGKQLA 154
           D   +C+ CGE GH A  C ++   C+NC + GH ++DCK PK E      N GK   LA
Sbjct: 52  D---ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108

Query: 155 AE 156
            +
Sbjct: 109 RD 110



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 40/123 (32%), Positives = 51/123 (40%), Gaps = 21/123 (17%)

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTS 77
           CF CG+ G +A  C   G R       G         +GG +  +        G    +S
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRG---------RGGFTSDR--------GFQFVSS 48

Query: 78  GKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGR----LCFNCNQPGHFS 133
                CYRC + GH    C      C+NCG  GH A  CK   R     C+NC +PGH +
Sbjct: 49  SLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108

Query: 134 RDC 136
           RDC
Sbjct: 109 RDC 111



 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 30/112 (26%), Positives = 44/112 (38%), Gaps = 29/112 (25%)

Query: 10  PIGDKDVTCFCCGKFGQFANNCS-VIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDA 68
           P  +++  C+ CGK G  A +C      +C+ C   GH+  +C                 
Sbjct: 90  PKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--------------- 134

Query: 69  TGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPL-CFNCGEIGHYASKCKIK 119
                       V CYRC + GH    C     + C+ CGE GH A +C I+
Sbjct: 135 ------------VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 174


>CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)
           (Zinc finger protein 9)
          Length = 177

 Score = 71.6 bits (174), Expect = 7e-13
 Identities = 40/141 (28%), Positives = 58/141 (40%), Gaps = 26/141 (18%)

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTS 77
           C+ CG+ G  A +C +    C+ C R GH+A +CK     P   + +             
Sbjct: 54  CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKE----PKREREQ------------- 96

Query: 78  GKIVTCYRCKKVGHYTNKCPDGG-PLCFNCGEIGHYASKC-KIKGRLCFNCNQPGHFSRD 135
                CY C K GH    C       C++CGE GH    C K+K   C+ C + GH + +
Sbjct: 97  ----CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK---CYRCGETGHVAIN 149

Query: 136 CKAPKGESSGNTGKGKQLAAE 156
           C      +    G+   LA E
Sbjct: 150 CSKTSEVNCYRCGESGHLARE 170



 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 20/122 (16%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
           CFKC R GH A  C T  GG     M+     G T ++    +            ++  P
Sbjct: 6   CFKCGRSGHWARECPT--GGGRGRGMRSRGRGGFTSDRGFQFV------------SSSLP 51

Query: 98  DGGPLCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCKAPKGESSG---NTGKGKQLA 154
           D   +C+ CGE GH A  C ++   C+NC + GH ++DCK PK E      N GK   LA
Sbjct: 52  D---ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108

Query: 155 AE 156
            +
Sbjct: 109 RD 110



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 40/123 (32%), Positives = 51/123 (40%), Gaps = 21/123 (17%)

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTS 77
           CF CG+ G +A  C   G R       G         +GG +  +        G    +S
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRG---------RGGFTSDR--------GFQFVSS 48

Query: 78  GKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGR----LCFNCNQPGHFS 133
                CYRC + GH    C      C+NCG  GH A  CK   R     C+NC +PGH +
Sbjct: 49  SLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108

Query: 134 RDC 136
           RDC
Sbjct: 109 RDC 111



 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 30/112 (26%), Positives = 44/112 (38%), Gaps = 29/112 (25%)

Query: 10  PIGDKDVTCFCCGKFGQFANNCS-VIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDA 68
           P  +++  C+ CGK G  A +C      +C+ C   GH+  +C                 
Sbjct: 90  PKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--------------- 134

Query: 69  TGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPL-CFNCGEIGHYASKCKIK 119
                       V CYRC + GH    C     + C+ CGE GH A +C I+
Sbjct: 135 ------------VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 174


>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-)
           (Germline helicase-1)
          Length = 763

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 39/163 (23%)

Query: 7   GG*PIGDKDVTCFCCGKFGQFANNCSVIGPR-------CFKCNREGHLAVNCKTLQ---- 55
           GG   G+++  CF C + G  +++C    PR       C+ C + GH +  C   +    
Sbjct: 149 GGHGGGERNNNCFNCQQPGHRSSDCPE--PRKEREPRVCYNCQQPGHTSRECTEERKPRE 206

Query: 56  -------GGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPL-CFNCG 107
                  GG       GND  GG G    G+                  + GP+ CFNC 
Sbjct: 207 GRTGGFGGGAGFGNNGGNDGFGGDGGFGGGE------------------ERGPMKCFNCK 248

Query: 108 EIGHYASKCKIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKG 150
             GH +++C    R CFNC + GH S +C  P     G  G+G
Sbjct: 249 GEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPREGVEGEG 291



 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 39/132 (29%)

Query: 24  FGQFANNCSVIGPRCFKCNREGHLAVNCKT------------------------------ 53
           FG+  +        CF C + GH + +C                                
Sbjct: 146 FGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPR 205

Query: 54  ------LQGGPSDSKMKGNDATGGTGNKTSGK---IVTCYRCKKVGHYTNKCPDGGPLCF 104
                   GG       GND  GG G    G+    + C+ CK  GH + +CP+    CF
Sbjct: 206 EGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCF 265

Query: 105 NCGEIGHYASKC 116
           NCGE GH +++C
Sbjct: 266 NCGEQGHRSNEC 277



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 24/84 (28%), Positives = 39/84 (45%), Gaps = 15/84 (17%)

Query: 65  GNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGRLCF 124
           GN   G  G+    +   C+ C++ GH ++ CP+                + + + R+C+
Sbjct: 142 GNSGFGEGGHGGGERNNNCFNCQQPGHRSSDCPE---------------PRKEREPRVCY 186

Query: 125 NCNQPGHFSRDCKAPKGESSGNTG 148
           NC QPGH SR+C   +    G TG
Sbjct: 187 NCQQPGHTSRECTEERKPREGRTG 210


>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-)
           (Germline helicase-2)
          Length = 974

 Score = 65.5 bits (158), Expect = 5e-11
 Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 25/155 (16%)

Query: 7   GG*PIGDKDVTCFCCGKFGQFANNC----SVIGPR-CFKCNREGHLAVNC----KTLQG- 56
           GG   G+++  CF C + G  +N+C        PR C+ C + GH + +C    K  +G 
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGR 421

Query: 57  -GPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASK 115
            G +     GND   G GN                 + N    G   CFNC   GH +++
Sbjct: 422 NGFTSGFGGGNDGGFGGGNAEG--------------FGNNEERGPMKCFNCKGEGHRSAE 467

Query: 116 CKIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKG 150
           C    R CFNC + GH S +C  P     G  G+G
Sbjct: 468 CPEPPRGCFNCGEQGHRSNECPNPAKPREGAEGEG 502



 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 49/191 (25%), Positives = 75/191 (38%), Gaps = 64/191 (33%)

Query: 7   GG*PIGDKDVTCFCCGKFGQFANNC----SVIGPR-CFKCNREGHLAVNCKT-------- 53
           GG   G+++  CF C + G  +N+C        PR C+ C + GH + +C          
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGR 307

Query: 54  --LQGGPS------------DSKM-----KGNDA-----TGGTGNKTSG----------- 78
               GG S            DS +      GN+      +GG G  ++G           
Sbjct: 308 NGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRG 367

Query: 79  -KIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCK 137
            +   C+ C++ GH +N CP+                K + + R+C+NC QPGH SRDC 
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPE---------------PKKEREPRVCYNCQQPGHNSRDCP 412

Query: 138 APKGESSGNTG 148
             +    G  G
Sbjct: 413 EERKPREGRNG 423



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 15/80 (18%)

Query: 69  TGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGRLCFNCNQ 128
           +GG G     +   C+ C++ GH +N CP+                K + + R+C+NC Q
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPE---------------PKKEREPRVCYNCQQ 289

Query: 129 PGHFSRDCKAPKGESSGNTG 148
           PGH SRDC   +    G  G
Sbjct: 290 PGHNSRDCPEERKPREGRNG 309


>GAG_EIAVY (P03351) Gag polyprotein [Contains: Core protein p15;
           Major core protein p26 (Capsid protein p26); Core
           protein p11; Core protein p9]
          Length = 486

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 7/57 (12%)

Query: 99  GGPL-----CFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCKA-PKGESSGNTGK 149
           GGPL     C+NCG+ GH +S+C+   ++CF C QPGHFS+ C++ PK    G  G+
Sbjct: 374 GGPLKAAQTCYNCGKPGHLSSQCRAP-KVCFKCKQPGHFSKQCRSVPKNGKQGAQGR 429



 Score = 37.4 bits (85), Expect = 0.016
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 17  TCFCCGKFGQFANNCSVIGPR-CFKCNREGHLAVNCKTL 54
           TC+ CGK G  ++ C    P+ CFKC + GH +  C+++
Sbjct: 382 TCYNCGKPGHLSSQCRA--PKVCFKCKQPGHFSKQCRSV 418


>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-)
           (Germline helicase-4)
          Length = 1156

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 32/107 (29%), Positives = 45/107 (41%), Gaps = 30/107 (28%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
           C  C  EGH++  C                      +K       C  C+++GH+ + C 
Sbjct: 572 CHNCGEEGHISKEC----------------------DKPKVPRFPCRNCEQLGHFASDCD 609

Query: 98  DG----GPLCFNCGEIGHYASKC---KIKGRLCFNCNQPGHFSRDCK 137
                 GP C NCG  GH+A  C   K+    C NC Q GHF++DC+
Sbjct: 610 QPRVPRGP-CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQ 655



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 30/91 (32%), Positives = 43/91 (46%), Gaps = 14/91 (15%)

Query: 56  GGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPL---CFNCGEIGHY 112
           G PSD++    D     G +  G    C+ C + GH + +C         C NC ++GH+
Sbjct: 553 GEPSDNQRGNWDG----GERPRG----CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHF 604

Query: 113 ASKC---KIKGRLCFNCNQPGHFSRDCKAPK 140
           AS C   ++    C NC   GHF+ DC  PK
Sbjct: 605 ASDCDQPRVPRGPCRNCGIEGHFAVDCDQPK 635



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 25/110 (22%)

Query: 56  GGPSDSKMKGNDATGGTG----NKTSGKIVTCYRCKKVGHYTNKCP-------------- 97
           GGP D      DA   +G    N   G + + +     G  +N                 
Sbjct: 503 GGPQDQGFGDTDAPSKSGLGSFNTGGGAVKSAFGAAGFGSSSNFGNGNTFGEPSDNQRGN 562

Query: 98  -DGGPL---CFNCGEIGHYASKC---KIKGRLCFNCNQPGHFSRDCKAPK 140
            DGG     C NCGE GH + +C   K+    C NC Q GHF+ DC  P+
Sbjct: 563 WDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPR 612



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 38/150 (25%), Positives = 54/150 (35%), Gaps = 40/150 (26%)

Query: 12  GDKDVTCFCCGKFGQFANNCSVIG-PR--CFKCNREGHLAVNCKT--LQGGPSDSKMKGN 66
           G++   C  CG+ G  +  C     PR  C  C + GH A +C    +  GP        
Sbjct: 566 GERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGP-------- 617

Query: 67  DATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDG----GPLCFNCGEIGHYASKCKIKG-- 120
                           C  C   GH+   C       GP C NCG+ GH+A  C+ +   
Sbjct: 618 ----------------CRNCGIEGHFAVDCDQPKVPRGP-CRNCGQEGHFAKDCQNERVR 660

Query: 121 ----RLCFNCNQPGHFSRDCKAPKGESSGN 146
                 C  C + GH+  +C     +  GN
Sbjct: 661 MEPTEPCRRCAEEGHWGYECPTRPKDLQGN 690


>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I
          Length = 218

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 26/67 (38%), Positives = 34/67 (49%), Gaps = 8/67 (11%)

Query: 83  CYRCKKVGHYTNKCP---DGGPLCFNCGEIGHYASKCKIKGRL----CFNCNQPGHFSRD 135
           C+ C++ GH    CP   D   +CF CG   H  + C  KG L    CF C++ GH S  
Sbjct: 79  CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQ 138

Query: 136 CKA-PKG 141
           C+  PKG
Sbjct: 139 CEQNPKG 145



 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 29/110 (26%), Positives = 42/110 (37%), Gaps = 33/110 (30%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
           CF C ++GH+  +C                       +    +  C+RC    H  N C 
Sbjct: 79  CFACRQQGHIVQDCP----------------------EAKDNVSICFRCGSKEHSLNACS 116

Query: 98  DGGPL----CFNCGEIGHYASKCK-------IKGRLCFNCNQPGHFSRDC 136
             GPL    CF C E GH + +C+        KG  C  C+   H ++DC
Sbjct: 117 KKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166



 Score = 36.2 bits (82), Expect = 0.035
 Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 22/83 (26%)

Query: 18  CFCCGKFGQFANNCSVIGP----RCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTG 73
           CF CG      N CS  GP    +CF C+  GHL+  C        +   KG    GG  
Sbjct: 102 CFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQC--------EQNPKGLYPKGG-- 151

Query: 74  NKTSGKIVTCYRCKKVGHYTNKC 96
                    C  C  V H    C
Sbjct: 152 --------CCKFCSSVHHLAKDC 166



 Score = 35.8 bits (81), Expect = 0.045
 Identities = 27/114 (23%), Positives = 39/114 (33%), Gaps = 31/114 (27%)

Query: 13  DKDVTCFCCGKFGQFANNCSVIGPR---CFKCNREGHLAVNCKTLQGGPSDSKMKGNDAT 69
           ++D  CF C + G    +C         CF+C  + H    C   + GP           
Sbjct: 74  NRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACS--KKGPL---------- 121

Query: 70  GGTGNKTSGKIVTCYRCKKVGHYTNKC---PDG----GPLCFNCGEIGHYASKC 116
                    K   C+ C + GH + +C   P G    G  C  C  + H A  C
Sbjct: 122 ---------KFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166


>GRP2_NICSY (P27484) Glycine-rich protein 2
          Length = 214

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 26/79 (32%), Positives = 33/79 (40%), Gaps = 8/79 (10%)

Query: 22  GKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIV 81
           G  G +    S  G  CFKC   GH A +C    GG    +  G    GG G        
Sbjct: 143 GGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGG------- 195

Query: 82  TCYRCKKVGHYTNKCPDGG 100
            CY+C + GH+  +C  GG
Sbjct: 196 -CYKCGEDGHFARECTSGG 213



 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 21/64 (32%), Positives = 26/64 (39%), Gaps = 17/64 (26%)

Query: 90  GHYTNKCPDGGPLCFNCGEIGHYASKCKIK-----------------GRLCFNCNQPGHF 132
           G Y      GG  CF CGE GH+A  C                    G  C+ C + GHF
Sbjct: 146 GGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHF 205

Query: 133 SRDC 136
           +R+C
Sbjct: 206 AREC 209



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 14/32 (43%), Positives = 18/32 (55%), Gaps = 4/32 (12%)

Query: 120 GRLCFNCNQPGHFSRDCKAPKGESSGNTGKGK 151
           G  CF C + GHF+RDC     +S G  G G+
Sbjct: 156 GSGCFKCGESGHFARDC----SQSGGGGGGGR 183


>ZCH9_HUMAN (Q8N567) Zinc finger CCHC domain containing protein 9
          Length = 271

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 20/99 (20%)

Query: 60  DSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPD-------GGPLCFNCGEIGHY 112
           DS+ +G         K +   + C+ C+K GH    CP        G  +C+ CG   H 
Sbjct: 110 DSRREGRRLKRQAAKKNA---MVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHE 166

Query: 113 ASKCKIK-----GRL----CFNCNQPGHFSRDC-KAPKG 141
            +KCK K     G      CF C + GH SR C   PKG
Sbjct: 167 ITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKG 205



 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 40/142 (28%), Positives = 51/142 (35%), Gaps = 42/142 (29%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKC- 96
           CF C + GH   +C         + ++  D   GTG         CYRC    H   KC 
Sbjct: 130 CFHCRKPGHGIADC--------PAALENQDM--GTG--------ICYRCGSTEHEITKCK 171

Query: 97  ----PDGGPL----CFNCGEIGHYASKCK-------IKGRLCFNCNQPGHFSRDCKAPKG 141
               P  G      CF CGE+GH +  C          G  C  C    H  +DC  P+ 
Sbjct: 172 AKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC--PES 229

Query: 142 ESS------GNTGKGKQLAAEE 157
           ++S      G   KG     EE
Sbjct: 230 QNSERMVTVGRWAKGMSADYEE 251



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/46 (32%), Positives = 20/46 (42%)

Query: 117 KIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAEERIHTK 162
           K    +CF+C +PGH   DC A        TG   +  + E   TK
Sbjct: 124 KKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITK 169



 Score = 28.9 bits (63), Expect = 5.5
 Identities = 23/90 (25%), Positives = 29/90 (31%), Gaps = 27/90 (30%)

Query: 18  CFCCGKFGQFANNCSV-IGP--------RCFKCNREGHLAVNCKTLQGGPSDSKMKGNDA 68
           C+ CG        C   + P        +CF C   GHL+ +C            KG  A
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSC--------PDNPKGLYA 208

Query: 69  TGGTGNKTSGKIVTCYRCKKVGHYTNKCPD 98
            GG           C  C  V H    CP+
Sbjct: 209 DGG----------GCKLCGSVEHLKKDCPE 228


>GR2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)
          Length = 201

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
           CFKC   GH+A  C    GG S     G   +GG G    G + +CY C + GH+   C 
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGL-SCYSCGESGHFARDCT 196

Query: 98  DGG 100
            GG
Sbjct: 197 SGG 199



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 28/86 (32%), Positives = 39/86 (44%), Gaps = 6/86 (6%)

Query: 55  QGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYAS 114
           +GG S     G   +GG G    G   +C++C + GH   +C  GG      G  G Y S
Sbjct: 112 RGGGSYGGGYGGRGSGGRGG--GGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGS 169

Query: 115 KCKIKGR----LCFNCNQPGHFSRDC 136
                G      C++C + GHF+RDC
Sbjct: 170 GGGGGGGGGGLSCYSCGESGHFARDC 195



 Score = 35.8 bits (81), Expect = 0.045
 Identities = 13/29 (44%), Positives = 17/29 (57%)

Query: 123 CFNCNQPGHFSRDCKAPKGESSGNTGKGK 151
           CF C +PGH +R+C    G  SG  G G+
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGR 166



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (57%)

Query: 7   GG*PIGDKDVTCFCCGKFGQFANNCSVIGPR 37
           GG   G   ++C+ CG+ G FA +C+  G R
Sbjct: 171 GGGGGGGGGLSCYSCGESGHFARDCTSGGAR 201


>GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17;
           Core protein p24; Core protein p15]
          Length = 513

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 20/44 (45%), Positives = 27/44 (60%), Gaps = 1/44 (2%)

Query: 95  KCPDGGPLCFNCGEIGHYASKCKIKGRL-CFNCNQPGHFSRDCK 137
           K P G   CFNCG+ GH   +CK   ++ CF C + GH ++DCK
Sbjct: 384 KGPRGPLKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCK 427



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 23/41 (55%), Gaps = 5/41 (12%)

Query: 18  CFCCGKFGQFANNCSVIGPR---CFKCNREGHLAVNCKTLQ 55
           CF CGKFG     C    PR   CFKC + GH+A +CK  Q
Sbjct: 392 CFNCGKFGHMQRECKA--PRQIKCFKCGKIGHMAKDCKNGQ 430



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 123 CFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAE 156
           CFNC + GH  R+CKAP+       GK   +A +
Sbjct: 392 CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKD 425



 Score = 32.7 bits (73), Expect = 0.38
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 25/66 (37%)

Query: 35  GP-RCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYT 93
           GP +CF C + GH+   CK                        + + + C++C K+GH  
Sbjct: 388 GPLKCFNCGKFGHMQRECK------------------------APRQIKCFKCGKIGHMA 423

Query: 94  NKCPDG 99
             C +G
Sbjct: 424 KDCKNG 429


>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein
           p17; Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 97  PDGGPLCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCKAPKGESS 144
           P+ G  C+ CG+ GH    CK   + C++C +PGH +R+C++  G+ S
Sbjct: 399 PEDGRRCYGCGKTGHLKRNCK--QQKCYHCGKPGHQARNCRSKNGKCS 444



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 83  CYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGRLC 123
           CY C K GH    C      C++CG+ GH A  C+ K   C
Sbjct: 405 CYGCGKTGHLKRNCKQ--QKCYHCGKPGHQARNCRSKNGKC 443



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQG 56
           C+ CGK G    NC     +C+ C + GH A NC++  G
Sbjct: 405 CYGCGKTGHLKRNCKQ--QKCYHCGKPGHQARNCRSKNG 441



 Score = 32.3 bits (72), Expect = 0.50
 Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 27/69 (39%)

Query: 35  GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTN 94
           G RC+ C + GHL  NCK  +                           CY C K GH   
Sbjct: 402 GRRCYGCGKTGHLKRNCKQQK---------------------------CYHCGKPGHQAR 434

Query: 95  KCPDGGPLC 103
            C      C
Sbjct: 435 NCRSKNGKC 443



 Score = 32.0 bits (71), Expect = 0.65
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 120 GRLCFNCNQPGHFSRDCKAPKGESSGNTG 148
           GR C+ C + GH  R+CK  K    G  G
Sbjct: 402 GRRCYGCGKTGHLKRNCKQQKCYHCGKPG 430


>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein
           p17; Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 97  PDGGPLCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCKAPKGESS 144
           P+ G  C+ CG+ GH    CK   + C++C +PGH +R+C++  G+ S
Sbjct: 399 PEDGRRCYGCGKTGHLKRNCK--QQKCYHCGKPGHQARNCRSKNGKCS 444



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 83  CYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGRLC 123
           CY C K GH    C      C++CG+ GH A  C+ K   C
Sbjct: 405 CYGCGKTGHLKRNCKQ--QKCYHCGKPGHQARNCRSKNGKC 443



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQG 56
           C+ CGK G    NC     +C+ C + GH A NC++  G
Sbjct: 405 CYGCGKTGHLKRNCKQ--QKCYHCGKPGHQARNCRSKNG 441



 Score = 32.3 bits (72), Expect = 0.50
 Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 27/69 (39%)

Query: 35  GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTN 94
           G RC+ C + GHL  NCK  +                           CY C K GH   
Sbjct: 402 GRRCYGCGKTGHLKRNCKQQK---------------------------CYHCGKPGHQAR 434

Query: 95  KCPDGGPLC 103
            C      C
Sbjct: 435 NCRSKNGKC 443



 Score = 32.0 bits (71), Expect = 0.65
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 120 GRLCFNCNQPGHFSRDCKAPKGESSGNTG 148
           GR C+ C + GH  R+CK  K    G  G
Sbjct: 402 GRRCYGCGKTGHLKRNCKQQKCYHCGKPG 430


>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15;
           Major core protein p24; Nucleic acid binding protein
           p10]
          Length = 449

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 102 LCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAEERI 159
           +CFNC + GH A +CK + + C NC +PGH + +C     ++SGN   G+  A   ++
Sbjct: 376 VCFNCKKPGHLARQCK-EAKRCNNCGKPGHLAANCWQGGRKTSGNEKVGRAAAPVNQV 432



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 26/47 (54%), Gaps = 1/47 (2%)

Query: 75  KTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGR 121
           +T G  + C+ CKK GH   +C +    C NCG+ GH A+ C   GR
Sbjct: 369 QTKGPRLVCFNCKKPGHLARQCKE-AKRCNNCGKPGHLAANCWQGGR 414



 Score = 31.6 bits (70), Expect = 0.85
 Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 28/82 (34%)

Query: 35  GPR--CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHY 92
           GPR  CF C + GHLA  CK  +                           C  C K GH 
Sbjct: 372 GPRLVCFNCKKPGHLARQCKEAK--------------------------RCNNCGKPGHL 405

Query: 93  TNKCPDGGPLCFNCGEIGHYAS 114
              C  GG       ++G  A+
Sbjct: 406 AANCWQGGRKTSGNEKVGRAAA 427


>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15;
           Major core protein p24; Nucleic acid binding protein
           p10]
          Length = 450

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 100 GPLCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKGKQLA 154
           GP+CFNC + GH A +C+ + + C  C +PGH +  C     ++SGN   G+  A
Sbjct: 374 GPVCFNCKKPGHLARQCR-EVKKCNKCGKPGHLAAKCWQGNRKNSGNWKAGRAAA 427



 Score = 38.5 bits (88), Expect = 0.007
 Identities = 18/43 (41%), Positives = 25/43 (57%), Gaps = 3/43 (6%)

Query: 74  NKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKC 116
           +K SG +  C+ CKK GH   +C +    C  CG+ GH A+KC
Sbjct: 370 SKGSGPV--CFNCKKPGHLARQCRE-VKKCNKCGKPGHLAAKC 409



 Score = 36.2 bits (82), Expect = 0.035
 Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 2/40 (5%)

Query: 117 KIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAE 156
           K  G +CFNC +PGH +R C+  K       GK   LAA+
Sbjct: 371 KGSGPVCFNCKKPGHLARQCREVK--KCNKCGKPGHLAAK 408



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 18/65 (27%), Positives = 23/65 (34%), Gaps = 26/65 (40%)

Query: 35  GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTN 94
           GP CF C + GHLA  C+                          ++  C +C K GH   
Sbjct: 374 GPVCFNCKKPGHLARQCR--------------------------EVKKCNKCGKPGHLAA 407

Query: 95  KCPDG 99
           KC  G
Sbjct: 408 KCWQG 412


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.140    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,806,942
Number of Sequences: 164201
Number of extensions: 1130843
Number of successful extensions: 3238
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2131
Number of HSP's gapped (non-prelim): 556
length of query: 165
length of database: 59,974,054
effective HSP length: 102
effective length of query: 63
effective length of database: 43,225,552
effective search space: 2723209776
effective search space used: 2723209776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)