BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0306.4
(968 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 476 e-133
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 473 e-132
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 473 e-132
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 319 2e-86
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 314 8e-85
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 306 2e-82
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 303 2e-81
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 291 4e-78
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 268 5e-71
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 202 4e-51
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 201 1e-50
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 201 1e-50
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 199 2e-50
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 199 4e-50
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 193 2e-48
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 181 1e-44
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 171 7e-42
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 146 2e-34
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 145 4e-34
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 142 4e-33
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 476 bits (1224), Expect = e-133
Identities = 284/872 (32%), Positives = 460/872 (52%), Gaps = 34/872 (3%)
Query: 9 SEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSP 68
+E++P+ P++ +EF +++ + + I Y + P ++ + ++ G IR S +
Sbjct: 390 TEKLPK--PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAI 447
Query: 69 WGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSY 128
PV+ V KK+G R+ VDY+ LNK N YPLP I+ L+ +++G +F+K+DLKS+Y
Sbjct: 448 NACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAY 507
Query: 129 HQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDD 188
H IRV+ D K AFR G +EYLVMP+G++ APA F ++N I E + VV ++DD
Sbjct: 508 HLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDD 567
Query: 189 ILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKV 248
ILI+S EH +H+ VL L+ L N +KCEF +V F+G+ IS++G +
Sbjct: 568 ILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENI 627
Query: 249 ETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQ 308
+ VL W+QPK E+R F+G Y R+FI +++ PL L +KD + WT + +
Sbjct: 628 DKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIE 687
Query: 309 TLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQ-----HWKVVAYASRQLKTHEK 363
+K+ L + PVL + + DAS +G VL Q + V Y S ++ +
Sbjct: 688 NIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQL 747
Query: 364 NYPTHDLELTAIVFSLKIWRHYLYGC--TFTIFSDHKSL--KYLFDQKELNMRQRRWMEF 419
NY D E+ AI+ SLK WRHYL F I +DH++L + + + N R RW F
Sbjct: 748 NYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLF 807
Query: 420 IKDYEFTLQYHPGKANVVADALSRKMHVSLKMVKELELLEQFRDMSLGVTPYEGMLKFGM 479
++D+ F + Y PG AN +ADALSR + + + K+ E D S+
Sbjct: 808 LQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSE------DNSINFV--------NQ 853
Query: 480 IRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRR 539
I I ++ D LL N + + ++ ++ KD++ +P + +L R
Sbjct: 854 ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
Query: 540 LIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGM 599
I+ + H+ IHPG+ + + F W G++KQ+ EYV C TCQ K + +P G
Sbjct: 914 TIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGP 973
Query: 600 LQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEI 659
LQ + E W+S+SMDF+ ALP + +++++V+VDR +K A +P + E+ A +
Sbjct: 974 LQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
Query: 660 YVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSL 719
+ ++ G I++D+D FTS W ++ S Y PQ DGQTERT Q++
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092
Query: 720 EDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYG-RKCRTPLCWYQDGES 778
E LLR + +W D L++ +YNN H++ M P+E ++ +PL +
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDK 1152
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTL-EFEEGDHVFLRVTQTTGVG 837
E Q+T + + ++E + + + K Y D + + + EF+ GD V ++ T+T G
Sbjct: 1153 T---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKT---G 1206
Query: 838 RAIKSRKLTPKFIGPYQITRRVGPVAYQIALP 869
KS KL P F GP+ + ++ GP Y++ LP
Sbjct: 1207 FLHKSNKLAPSFAGPFYVLQKSGPNNYELDLP 1238
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 473 bits (1217), Expect = e-132
Identities = 283/872 (32%), Positives = 460/872 (52%), Gaps = 34/872 (3%)
Query: 9 SEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSP 68
+E++P+ P++ +EF +++ + + I Y + P ++ + ++ G IR S +
Sbjct: 390 TEKLPK--PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAI 447
Query: 69 WGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSY 128
PV+ V KK+G R+ VDY+ LNK N YPLP I+ L+ +++G +F+K+DLKS+Y
Sbjct: 448 NACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAY 507
Query: 129 HQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDD 188
H IRV+ D K AFR G +EYLVMP+G++ APA F ++N I E + VV ++D+
Sbjct: 508 HLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDN 567
Query: 189 ILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKV 248
ILI+S EH +H+ VL L+ L N +KCEF +V F+G+ IS++G +
Sbjct: 568 ILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENI 627
Query: 249 ETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQ 308
+ VL W+QPK E+R F+G Y R+FI +++ PL L +KD + WT + +
Sbjct: 628 DKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIE 687
Query: 309 TLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQ-----HWKVVAYASRQLKTHEK 363
+K+ L + PVL + + DAS +G VL Q + V Y S ++ +
Sbjct: 688 NIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQL 747
Query: 364 NYPTHDLELTAIVFSLKIWRHYLYGC--TFTIFSDHKSL--KYLFDQKELNMRQRRWMEF 419
NY D E+ AI+ SLK WRHYL F I +DH++L + + + N R RW F
Sbjct: 748 NYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLF 807
Query: 420 IKDYEFTLQYHPGKANVVADALSRKMHVSLKMVKELELLEQFRDMSLGVTPYEGMLKFGM 479
++D+ F + Y PG AN +ADALSR + + + K+ E D S+
Sbjct: 808 LQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSE------DNSINFV--------NQ 853
Query: 480 IRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRR 539
I I ++ D LL N + + ++ ++ KD++ +P + +L R
Sbjct: 854 ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
Query: 540 LIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGM 599
I+ + H+ IHPG+ + + F W G++KQ+ EYV C TCQ K + +P G
Sbjct: 914 TIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGP 973
Query: 600 LQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEI 659
LQ + E W+S+SMDF+ ALP + +++++V+VDR +K A +P + E+ A +
Sbjct: 974 LQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
Query: 660 YVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSL 719
+ ++ G I++D+D FTS W ++ S Y PQ DGQTERT Q++
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092
Query: 720 EDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYG-RKCRTPLCWYQDGES 778
E LLR + +W D L++ +YNN H++ M P+E ++ +PL +
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDK 1152
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTL-EFEEGDHVFLRVTQTTGVG 837
E Q+T + + ++E + + + K Y D + + + EF+ GD V ++ T+T G
Sbjct: 1153 T---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKT---G 1206
Query: 838 RAIKSRKLTPKFIGPYQITRRVGPVAYQIALP 869
KS KL P F GP+ + ++ GP Y++ LP
Sbjct: 1207 FLHKSNKLAPSFAGPFYVLQKSGPNNYELDLP 1238
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 473 bits (1217), Expect = e-132
Identities = 283/872 (32%), Positives = 460/872 (52%), Gaps = 34/872 (3%)
Query: 9 SEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSP 68
+E++P+ P++ +EF +++ + + I Y + P ++ + ++ G IR S +
Sbjct: 390 TEKLPK--PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAI 447
Query: 69 WGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSY 128
PV+ V KK+G R+ VDY+ LNK N YPLP I+ L+ +++G +F+K+DLKS+Y
Sbjct: 448 NACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAY 507
Query: 129 HQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDD 188
H IRV+ D K AFR G +EYLVMP+G++ APA F ++N I E + VV ++D+
Sbjct: 508 HLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDN 567
Query: 189 ILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKV 248
ILI+S EH +H+ VL L+ L N +KCEF +V F+G+ IS++G +
Sbjct: 568 ILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENI 627
Query: 249 ETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQ 308
+ VL W+QPK E+R F+G Y R+FI +++ PL L +KD + WT + +
Sbjct: 628 DKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIE 687
Query: 309 TLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQ-----HWKVVAYASRQLKTHEK 363
+K+ L + PVL + + DAS +G VL Q + V Y S ++ +
Sbjct: 688 NIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQL 747
Query: 364 NYPTHDLELTAIVFSLKIWRHYLYGC--TFTIFSDHKSL--KYLFDQKELNMRQRRWMEF 419
NY D E+ AI+ SLK WRHYL F I +DH++L + + + N R RW F
Sbjct: 748 NYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLF 807
Query: 420 IKDYEFTLQYHPGKANVVADALSRKMHVSLKMVKELELLEQFRDMSLGVTPYEGMLKFGM 479
++D+ F + Y PG AN +ADALSR + + + K+ E D S+
Sbjct: 808 LQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSE------DNSINFV--------NQ 853
Query: 480 IRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRR 539
I I ++ D LL N + + ++ ++ KD++ +P + +L R
Sbjct: 854 ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
Query: 540 LIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGM 599
I+ + H+ IHPG+ + + F W G++KQ+ EYV C TCQ K + +P G
Sbjct: 914 TIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGP 973
Query: 600 LQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEI 659
LQ + E W+S+SMDF+ ALP + +++++V+VDR +K A +P + E+ A +
Sbjct: 974 LQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
Query: 660 YVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSL 719
+ ++ G I++D+D FTS W ++ S Y PQ DGQTERT Q++
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092
Query: 720 EDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYG-RKCRTPLCWYQDGES 778
E LLR + +W D L++ +YNN H++ M P+E ++ +PL +
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDK 1152
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTL-EFEEGDHVFLRVTQTTGVG 837
E Q+T + + ++E + + + K Y D + + + EF+ GD V ++ T+T G
Sbjct: 1153 T---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKT---G 1206
Query: 838 RAIKSRKLTPKFIGPYQITRRVGPVAYQIALP 869
KS KL P F GP+ + ++ GP Y++ LP
Sbjct: 1207 FLHKSNKLAPSFAGPFYVLQKSGPNNYELDLP 1238
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 319 bits (818), Expect = 2e-86
Identities = 203/621 (32%), Positives = 320/621 (50%), Gaps = 55/621 (8%)
Query: 33 PISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLVKKKD-----GKSRLCV 87
PI Y +A +E+++Q++++ +G IR S SP+ +P +V KK K R+ +
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265
Query: 88 DYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRY 147
DYR+LN+ T+ +RYP+P +D+++ +L F+ IDL +HQI + E I KTAF T+
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325
Query: 148 GHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVL 207
GHYEYL MPFG+ NAPA F MN I L++ +V++DDI+I+S EH + V
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385
Query: 208 HVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTVTEIRSFV 267
L + L KCEF +E NFLGH+++ +GI +P KV+ ++++ P EIR+F+
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445
Query: 268 GLAGYYRRFIEGFAKIVGPLTQLTRK-----DQPFAWTEACKTSFQTLKERLTTSPVLIL 322
GL GYYR+FI +A I P+T +K Q + EA F+ LK + P+L L
Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEA----FEKLKALIIRDPILQL 501
Query: 323 PQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFSLKIW 382
P E+ + + DAS+ LG VL Q+ +++ SR L HE NY + EL AIV++ K +
Sbjct: 502 PDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTF 561
Query: 383 RHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPGKANVVADALS 442
RHYL G F I SDH+ L++L + KE + RW + +Y+F + Y GK N VADALS
Sbjct: 562 RHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALS 621
Query: 443 R----------------------KMHVSLKMVKELELLEQFRDMSLGVTPYEGMLKFGMI 480
R +H++ K + + F + + +
Sbjct: 622 RIKIEENHHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKSDKNKVEHSKIFGNSIT 681
Query: 481 RIASGLMEEIRERQ-LQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRR 539
I +M + +Q L D F+ + I+ D +F+I + R + T ++ R
Sbjct: 682 TIQYDVMTLEKAKQILLDHFIHRNITIYIE-SDVDFEI----VQRAHIEIVNTTYTKVIR 736
Query: 540 ---LIMDEGHKSKWR----------IHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTC 586
L+ + G ++++ +HPG+ KM + K N ++P + + + C C
Sbjct: 737 SLFLLKNVGSYAEFKEIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNIC 796
Query: 587 QKAKVEHQRPAGMLQSLDVPE 607
AK EH+ L+ PE
Sbjct: 797 NLAKTEHRNTKMPLKITPNPE 817
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 314 bits (804), Expect = 8e-85
Identities = 194/599 (32%), Positives = 313/599 (51%), Gaps = 42/599 (7%)
Query: 48 ELKSQLEDLSAKGFIRPSVSPWGAPVLLVKKKDGKS-----RLCVDYRQLNKATVKNRYP 102
E++SQ++D+ +G IR S SP+ +P+ +V KK S R+ +DYR+LN+ TV +R+P
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281
Query: 103 LPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNA 162
+P +D+++ +L F+ IDL +HQI + E + KTAF T++GHYEYL MPFG+ NA
Sbjct: 282 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 341
Query: 163 PAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKC 222
PA F MN I L++ +V++DDI+++S EH + L V L + L KC
Sbjct: 342 PATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKC 401
Query: 223 EFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAK 282
EF +E FLGHV++ +GI +P K+E + + P EI++F+GL GYYR+FI FA
Sbjct: 402 EFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFAD 461
Query: 283 IVGPLTQLTRKDQPFAWTE-ACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLG 341
I P+T+ +K+ T ++F+ LK ++ P+L +P + + + DAS LG
Sbjct: 462 IAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALG 521
Query: 342 CVLMQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLK 401
VL Q ++Y SR L HE NY T + EL AIV++ K +RHYL G F I SDH+ L
Sbjct: 522 AVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLS 581
Query: 402 YLFDQKELNMRQRRWMEFIKDYEFTLQYHPGKANVVADALSR-----------------K 444
+L+ K+ N + RW + +++F ++Y GK N VADALSR +
Sbjct: 582 WLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEE 641
Query: 445 MHVSLKMVKELELLEQFRDMSLGVTPYEGMLKFGMIRIASGLMEEIRERQLQDVFLLE-- 502
+ L + E L R + P + + + + + +I R+ + +L++
Sbjct: 642 DNSDLIFITERPLNTFNRQVIFSKGPPDIKVTKYFKKHITQIFYDIMTREKAEQYLIDHF 701
Query: 503 --KRNLVIQGKDPEFKI-----------GTDNILRCKDRV-CVPTNPELRRLIMDEGHKS 548
K++ + D +F++ ILR + + T E + LI+ K
Sbjct: 702 CGKKSALYIESDADFEVIQAAHKLAINTKYTKILRSTILLKNITTYAEFKELILTAHEK- 760
Query: 549 KWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPE 607
+HPG+ K + +++P + + + C C AK EH+ ++ PE
Sbjct: 761 --LLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPTKTTPKPE 817
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 306 bits (783), Expect = 2e-82
Identities = 241/864 (27%), Positives = 396/864 (44%), Gaps = 122/864 (14%)
Query: 48 ELKSQLEDLSAKGFIRPSVSPWGAPVLLVKKK-----DGKSRLCVDYRQLNKATVKNRYP 102
E++ Q+++L G IRPS SP+ +P+ +V KK + + R+ VD+++LN T+ + YP
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197
Query: 103 LPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNA 162
+P I+ + L F+ +DL S +HQI +K DIPKTAF T G YE+L +PFG+ NA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257
Query: 163 PAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKC 222
PA+F ++ I E + + V+IDDI+++S D H ++L VL L + L N K
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317
Query: 223 EFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAK 282
F +V FLG++++ +GI DP KV + P +V E++ F+G+ YYR+FI+ +AK
Sbjct: 318 HFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAK 377
Query: 283 IVGPLTQLTR-----------KDQPFAWTEACKTSFQTLKERLTTSPVLILPQPEEPYEV 331
+ PLT LTR P E SF LK L +S +L P +P+ +
Sbjct: 378 VAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHL 437
Query: 332 YCDASHQGLGCVLMQ----HWKVVAYASRQLKTHEKNYPTHDLELTAIVFSLKIWRHYLY 387
DAS+ +G VL Q + +AY SR L E+NY T + E+ AI++SL R YLY
Sbjct: 438 TTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLY 497
Query: 388 GC-TFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPGKANVVADALSR--- 443
G T +++DH+ L + + N + +RW I++Y L Y PGK+NVVADALSR
Sbjct: 498 GAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPP 557
Query: 444 -------------------------KMHVSLKMVKELE----------LLEQFRDMSLGV 468
+H S +++ +E + + R L
Sbjct: 558 QLNQLSTDLDANPEDDMQSLATAHSALHDSSRLIPHVESPINVFKNQLIFDTTRSKYLCE 617
Query: 469 TPYEGMLKFGMIRIASGLMEEIRERQLQDVFLLEKRNLVIQG-KDPEF------KIGTDN 521
P+ G + +I + G + ++ LQ R ++I G K PE I N
Sbjct: 618 HPFPGYTRH-LIPLKDGSLADL-TNSLQSCL----RPVIINGVKIPEAHLQRFQSICLAN 671
Query: 522 ILRCKDRVCVPTNPELRRLIMDEG---------HKSKWRIHPGMTKMYQDLKLNFWWPGM 572
L K R+ +RL+ D K R H G T++ L +++P M
Sbjct: 672 FLLYKIRI-------TQRLVADVSGAEEICEIIEKEHRRAHRGPTEIRLQLLEKYYFPRM 724
Query: 573 KKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIW 632
+ ++C C+ K E LQ +P + + + +D R
Sbjct: 725 SSTIRLQTSSCQCCKLYKYERHPNKPNLQPTPIPNYPCEILHIDIFALEKRLYLS----- 779
Query: 633 VIVDRLTKSAHFLPGRTTYNVEKLAEIYVAE--IVRLHGVSTS--IVSDSDPKFTSHFWG 688
+D+ +K A ++++ A +++ E + LH + +VSD++
Sbjct: 780 -CIDKFSKFAKL------FHLQSKASVHLRETLVEALHYFTAPKVLVSDNERGLLCPTVL 832
Query: 689 ALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACVLDNRGSWD--DLQPLIEFTYN 746
+L L + +++GQ ER + ++ R C+ D ++ +L + YN
Sbjct: 833 NYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYR-CLKDELPTFKPVELVHIAVDRYN 891
Query: 747 NNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQQTTEKVKQIRE--KMRASQ 804
+ H+ P + + R R D +QT E +K + E ++R +
Sbjct: 892 TSVHSVTNRKPADVFFDRSSRVNYQGLTD---------FRRQTLEDIKGLIEYKQIRGNM 942
Query: 805 SRQKSYADQRRRTLEFEEGDHVFL 828
+R K+ R + GD VF+
Sbjct: 943 ARNKN----RDEPKSYGPGDEVFV 962
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 303 bits (775), Expect = 2e-81
Identities = 248/876 (28%), Positives = 409/876 (46%), Gaps = 63/876 (7%)
Query: 22 EFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLVKKKDG 81
E VI++ G PI P + A E++ ++ + + IR S SPW +PV+LVKKKDG
Sbjct: 931 ECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDG 990
Query: 82 KSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKT 141
R+C+DYR++NK N +PLP I+ + L G +++ D+ + + QI + + T
Sbjct: 991 SIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEIT 1050
Query: 142 AFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEE 201
AF +E+ V+PFG+ +PA+F M I + L V++DD+LI S D ++H +
Sbjct: 1051 AFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQ 1110
Query: 202 HLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTVT 261
+ + L +R+ + SKC +EV +LGH ++ +G+ K + + + +P V
Sbjct: 1111 DVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVK 1170
Query: 262 EIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLI 321
E++SF+GL GYYR+FI FA+I LT L + W + + +FQ LK+ + +PVL
Sbjct: 1171 ELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLA 1230
Query: 322 LPQPE------EPYEVYCDASHQGLGCVLMQ-----HWKVVAYASRQLKTHEKNYPTHDL 370
P E P+ +Y DAS +G+G VL Q +A+AS+ L E Y DL
Sbjct: 1231 QPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDL 1290
Query: 371 ELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQYH 430
E A++F+L+ ++ +YG T+F+DHK L L L R RW I +++ + Y
Sbjct: 1291 EALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADRLWRWSIEILEFDVKIVYL 1350
Query: 431 PGKANVVADALSRKMHVSLKMVKELELLEQFRDMSLGVTPYEGMLKFGMIRIASGLMEEI 490
GKAN VADALSR ELE EQ ++++ V + L I +S +E +
Sbjct: 1351 AGKANAVADALSR----GGCPPNELE-EEQTKELTSIVNAIQTELP--DILDSSCWLERL 1403
Query: 491 R---ERQLQDVFLLE----KRNLVIQGKDPEFKIGTDNI---------LRCKDRVCVPTN 534
+ E + + LE K I G + E + I + + R VP
Sbjct: 1404 KGEDEGWKEVIAALEGGKTKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVVP-- 1461
Query: 535 PELRRLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQ 594
++R ++ E H+ H G+ KM++ + F+WP M+ V V C C A +H
Sbjct: 1462 EKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN-DHS 1520
Query: 595 RPAGMLQSLDVPEWKWDSISMDFV-VALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNV 653
+ L + + + ++ D + V L R+ I I+D TK +P
Sbjct: 1521 KLTSSLTPYRM-TFPLEIVACDLMDVGLSVQGNRY--ILTIIDLFTKYGTAVP-IPDKKA 1576
Query: 654 EKLAEIYVAEIVRLHG-VSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQT 712
E + + +V G + +++D +F + + L + + Y+ + +G
Sbjct: 1577 ETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAV 1636
Query: 713 ERTIQSLEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCW 772
ER +++ +++ WDD + YNN H + G P ++GR PL
Sbjct: 1637 ERFNKTIMHIMKKKTAVPM-EWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPL-- 1693
Query: 773 YQDGESLLIG---------PELLQQTTEKVKQI-REKMRASQSRQKSYADQRRRTLEF-- 820
GE +G LL Q KV++I +E Q KS DQ+ + +
Sbjct: 1694 EMSGED-AVGINYADMDEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQKYASKKHRF 1752
Query: 821 -EEGDHVFLRVTQTTGVGRAIKSRKLTPKFIGPYQI 855
+ G V L + + KL K+ GPY++
Sbjct: 1753 PQPGSRVLLEIPSEK---LGAQCPKLVNKWSGPYRV 1785
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 291 bits (746), Expect = 4e-78
Identities = 219/854 (25%), Positives = 388/854 (44%), Gaps = 98/854 (11%)
Query: 49 LKSQLEDLSAKGFIRPSVSPWGAPVLLVKKK------DGKSRLCVDYRQLNKATVKNRYP 102
+ ++++ L G IRPS SP+ +P +V KK + RL +D+R+LN+ T+ +RYP
Sbjct: 197 VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYP 256
Query: 103 LPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNA 162
+P I ++ L F+ +DLKS YHQI + D KT+F G YE+ +PFG+ NA
Sbjct: 257 MPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNA 316
Query: 163 PAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKC 222
++F ++ + E + + V++DD++I+S + +H H+ VL L + + + K
Sbjct: 317 SSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKT 376
Query: 223 EFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAK 282
F+ E V +LG ++SK+G DP KV+ + + +P V ++RSF+GLA YYR FI+ FA
Sbjct: 377 RFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAA 436
Query: 283 IVGPLTQLTR-----------KDQPFAWTEACKTSFQTLKERLTTSPVLI-LPQPEEPYE 330
I P+T + + K P + E + +FQ L+ L + V++ P ++P++
Sbjct: 437 IARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFD 496
Query: 331 VYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFSLKIWRHYLYGC- 389
+ DAS G+G VL Q + + SR LK E+NY T++ EL AIV++L +++LYG
Sbjct: 497 LTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSR 556
Query: 390 TFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPGKANVVADALSRK----- 444
IF+DH+ L + + N + +RW +I + + Y PGK N VADALSR+
Sbjct: 557 EINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLNAL 616
Query: 445 ----------MHVSLKMVKELELLEQ------------------FRDMSLGVTPYEGMLK 476
+H L + +E ++ R++ L + ++
Sbjct: 617 QNEPQSDAATIHSELSLTYTVETTDKPLNCFRNQIILEAARFPLKRNLVLFRSKSRHLIS 676
Query: 477 FGMIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPE 536
F ++E+ + + + L D CK+ V T+
Sbjct: 677 FTDKSWLLKTLKEVVNPDVVNAIHCDLPTLASFQHDLIAHFPATQFRHCKNVVLDITDKN 736
Query: 537 LRRLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRP 596
+ I+ H R H + + + ++++P M E VA C C +AK +
Sbjct: 737 EQIEIVTAEHN---RAHRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPK 793
Query: 597 AGMLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKL 656
L +P + + + +D T ++ +D+ +K A P + V+
Sbjct: 794 KQELGETPIPSYTGEMVHIDIF----STDRK--LFLTCIDKFSKYAIVQPVVSRTIVDIT 847
Query: 657 AEIYVAEIVRLHGVSTSIVSDSDPKFTSH-FWGALHDALGTKLRLSSAYHPQIDGQTERT 715
A + +I+ L ++ D++P F S L ++ G + + H +GQ ER
Sbjct: 848 APL--LQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERF 905
Query: 716 IQSLEDLLRACVLDNRGSWDDLQPLIEFT--YNNNFHASIGMAPYEALYGRKCRTPLCWY 773
+L ++ R LD + + D ++ ++ T YN H+ P E ++
Sbjct: 906 HSTLAEIARCLKLDKKTN-DTVELILRATIEYNKTVHSVTRERPIEVVH----------- 953
Query: 774 QDGESLLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQT 833
E+ +I+ ++ +Q + R+ FE G+ VF++ +
Sbjct: 954 -------------PGAHERCLEIKARLVKAQQDSIGRNNPSRQNRVFEVGERVFVKNNKR 1000
Query: 834 TGVGRAIKSRKLTP 847
G KLTP
Sbjct: 1001 LG-------NKLTP 1007
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 268 bits (685), Expect = 5e-71
Identities = 155/433 (35%), Positives = 236/433 (53%), Gaps = 13/433 (3%)
Query: 33 PISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLVKKKDG------KSRLC 86
P+ YR +++ E+++Q++ L + PSVS + +P+LLV KK K RL
Sbjct: 314 PVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLV 373
Query: 87 VDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTR 146
+DYRQ+NK + +++PLPRIDD++DQL FS +DL S +HQI + T+F T
Sbjct: 374 IDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTS 433
Query: 147 YGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQV 206
G Y + +PFG+ AP F M F +++DD+++ K ++L +V
Sbjct: 434 NGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEV 493
Query: 207 LHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTVTEIRSF 266
RE L +P KC F++ EV FLGH + +GI+ D K + + + P R F
Sbjct: 494 FGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRF 553
Query: 267 VGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPE 326
V YYRRFI+ FA +T+L +K+ PF WT+ C+ +F LK +L +L P
Sbjct: 554 VAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFS 613
Query: 327 EPYEVYCDASHQGLGCVLMQ----HWKVVAYASRQLKTHEKNYPTHDLELTAIVFSLKIW 382
+ + + DAS Q G VL Q H VAYASR E N T + EL AI +++ +
Sbjct: 614 KEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHF 673
Query: 383 RHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPGKANVVADALS 442
R Y+YG FT+ +DH+ L YLF + + R +++Y FT++Y GK N VADALS
Sbjct: 674 RPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALS 733
Query: 443 RKMHVSLKMVKEL 455
R +++K +K++
Sbjct: 734 R---ITIKELKDI 743
Score = 95.5 bits (236), Expect = 6e-19
Identities = 73/309 (23%), Positives = 139/309 (44%), Gaps = 17/309 (5%)
Query: 553 HPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPEWKWDS 612
H G+TK +K +++W M K + EYV C CQKAK M + + PE +D
Sbjct: 909 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTIT-ETPEHAFDR 967
Query: 613 ISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRLHGVST 672
+ +D + LP+++ ++ ++ LTK +P + + +A+ + +G
Sbjct: 968 VVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIP-IANKSAKTVAKAIFESFILKYGPMK 1026
Query: 673 SIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACVLDNRG 732
+ ++D ++ + L L K S+A+H Q G ER+ ++L + +R+ + ++
Sbjct: 1027 TFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKT 1086
Query: 733 SWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCW--YQDGESLLIGPELLQQTT 790
WD + +N PYE ++GR P + E + + +++
Sbjct: 1087 DWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESK 1146
Query: 791 EKVK----QIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLT 846
+++ + R+ + A + + K D + + +E E GD V LR VG KL
Sbjct: 1147 YRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLR----NEVG-----HKLD 1197
Query: 847 PKFIGPYQI 855
K+ GPY+I
Sbjct: 1198 FKYTGPYKI 1206
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 202 bits (514), Expect = 4e-51
Identities = 135/434 (31%), Positives = 221/434 (50%), Gaps = 26/434 (5%)
Query: 34 ISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLV----KKKDGKSRLCVDY 89
I + P + +P + E Q+++L I+PS SP AP LV +K+ GK R+ V+Y
Sbjct: 247 IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNY 306
Query: 90 RQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGH 149
+ +NKATV + Y LP D+L+ +RG +FS D KS + Q+ + E P TAF GH
Sbjct: 307 KAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH 366
Query: 150 YEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVLHV 209
YE+ V+PFG+ AP++F +M+ F F +F V++DDIL++S + ++H H+ +L
Sbjct: 367 YEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQK 425
Query: 210 LREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTV---TEIRSF 266
+ + + K + + +++NFLG I + +E + + P T+ +++ F
Sbjct: 426 CNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQLQRF 483
Query: 267 VGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPE 326
+G+ Y +I A+I PL +++ P+ WT+ Q +K+ L P L P PE
Sbjct: 484 LGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPE 543
Query: 327 EPYEVYCDASHQGLGCVL--------MQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFS 378
E + DAS G +L + YAS K EKNY ++D E A++ +
Sbjct: 544 EKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINT 603
Query: 379 LKIWRHYLYGCTFTIFSDHK------SLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPG 432
+K + YL F I +D+ +L Y D K R RW ++ Y F +++ G
Sbjct: 604 IKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKG 661
Query: 433 KANVVADALSRKMH 446
N AD LSR+ +
Sbjct: 662 TDNHFADFLSREFN 675
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 201 bits (510), Expect = 1e-50
Identities = 133/434 (30%), Positives = 221/434 (50%), Gaps = 26/434 (5%)
Query: 34 ISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLV----KKKDGKSRLCVDY 89
I + P + +P + E Q+++L I+PS SP AP LV +K+ GK R+ V+Y
Sbjct: 247 IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNY 306
Query: 90 RQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGH 149
+ +NKAT+ + Y LP D+L+ +RG +FS D KS + Q+ + E P TAF GH
Sbjct: 307 KAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH 366
Query: 150 YEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVLHV 209
YE+ V+PFG+ AP++F +M+ F F +F V++DDIL++S + ++H H+ +L
Sbjct: 367 YEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQK 425
Query: 210 LREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTV---TEIRSF 266
+ + + K + + +++NFLG I + +E + + P T+ +++ F
Sbjct: 426 CNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQLQRF 483
Query: 267 VGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPE 326
+G+ Y +I A+I PL +++ P+ WT+ Q +K+ L P L P PE
Sbjct: 484 LGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPE 543
Query: 327 EPYEVYCDASHQGLGCVL--------MQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFS 378
E + DAS G +L + YAS K E+NY ++D E A++ +
Sbjct: 544 EKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINT 603
Query: 379 LKIWRHYLYGCTFTIFSDHK------SLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPG 432
+K + YL F I +D+ +L Y D K R RW ++ Y F +++ G
Sbjct: 604 IKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKG 661
Query: 433 KANVVADALSRKMH 446
N AD LSR+ +
Sbjct: 662 TDNHFADFLSREFN 675
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 201 bits (510), Expect = 1e-50
Identities = 133/434 (30%), Positives = 221/434 (50%), Gaps = 26/434 (5%)
Query: 34 ISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLV----KKKDGKSRLCVDY 89
I + P + +P + E Q+++L I+PS SP AP LV +K+ GK R+ V+Y
Sbjct: 247 IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNY 306
Query: 90 RQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGH 149
+ +NKAT+ + Y LP D+L+ +RG +FS D KS + Q+ + E P TAF GH
Sbjct: 307 KAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH 366
Query: 150 YEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVLHV 209
YE+ V+PFG+ AP++F +M+ F F +F V++DDIL++S + ++H H+ +L
Sbjct: 367 YEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQK 425
Query: 210 LREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTV---TEIRSF 266
+ + + K + + +++NFLG I + +E + + P T+ +++ F
Sbjct: 426 CNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQLQRF 483
Query: 267 VGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPE 326
+G+ Y +I A+I PL +++ P+ WT+ Q +K+ L P L P PE
Sbjct: 484 LGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPE 543
Query: 327 EPYEVYCDASHQGLGCVL--------MQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFS 378
E + DAS G +L + YAS K E+NY ++D E A++ +
Sbjct: 544 EKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINT 603
Query: 379 LKIWRHYLYGCTFTIFSDHK------SLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPG 432
+K + YL F I +D+ +L Y D K R RW ++ Y F +++ G
Sbjct: 604 IKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKG 661
Query: 433 KANVVADALSRKMH 446
N AD LSR+ +
Sbjct: 662 TDNHFADFLSREFN 675
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 199 bits (507), Expect = 2e-50
Identities = 134/434 (30%), Positives = 220/434 (49%), Gaps = 26/434 (5%)
Query: 34 ISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLV----KKKDGKSRLCVDY 89
I + P + +P + E Q+++L I+PS SP AP LV +K+ GK R+ V+Y
Sbjct: 242 IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNY 301
Query: 90 RQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGH 149
+ +NKATV + Y P D+L+ +RG +FS D KS + Q+ + E P TAF GH
Sbjct: 302 KAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH 361
Query: 150 YEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVLHV 209
YE+ V+PFG+ AP++F +M+ F F +F V++DDIL++S + ++H H+ +L
Sbjct: 362 YEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQK 420
Query: 210 LREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTV---TEIRSF 266
+ + + K + + +++NFLG I + +E + + P T+ +++ F
Sbjct: 421 CNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQLQRF 478
Query: 267 VGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPE 326
+G+ Y +I A+I PL +++ P+ WT+ Q +K+ L P L P PE
Sbjct: 479 LGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPE 538
Query: 327 EPYEVYCDASHQGLGCVL--------MQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFS 378
E + DAS G +L + YAS K EKNY ++D E A++ +
Sbjct: 539 EKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINT 598
Query: 379 LKIWRHYLYGCTFTIFSDHK------SLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPG 432
+K + YL F I +D+ +L Y D K R RW ++ Y F +++ G
Sbjct: 599 IKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKG 656
Query: 433 KANVVADALSRKMH 446
N AD LSR+ +
Sbjct: 657 TDNHFADFLSREFN 670
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 199 bits (505), Expect = 4e-50
Identities = 130/455 (28%), Positives = 232/455 (50%), Gaps = 24/455 (5%)
Query: 8 CSEEVPRLPPVRDVEFVIDIVRGFGP---ISIAPYRMAPAELVELKSQLEDLSAKGFIRP 64
CSE + P++ +++ ++ P I + P +P + Q+++L G I P
Sbjct: 213 CSENP--IDPIKSKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIP 270
Query: 65 SVSPWGAPVLLVK----KKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
S S +P LV+ ++ GK R+ V+Y+ +N+AT+ + + LP + +L+ LRG ++FS
Sbjct: 271 SKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFS 330
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
D KS + Q+ + E TAF GH+++ V+PFG+ AP++F +M + D+
Sbjct: 331 SFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADK 389
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
F +V++DDI+++S +H H+ VL ++ + + + K + E++NFLG I K
Sbjct: 390 FCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGT 449
Query: 241 IVVDPAKVETVLAW-EQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAW 299
+E + + ++ + ++ F+G+ Y +I A+I PL +KD + W
Sbjct: 450 HCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNW 509
Query: 300 TEACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQH-----WKVVAYA 354
T++ + +K+ L + P L LP+PE+ + DAS G VL + Y+
Sbjct: 510 TQSDSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYS 569
Query: 355 SRQLKTHEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLF------DQKE 408
S K EKNY ++D EL A+ + + YL FT+ +D+K+ Y D K+
Sbjct: 570 SGSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQ 629
Query: 409 LNMRQRRWMEFIKDYEFTLQYHPGKANVVADALSR 443
R RW + Y+F +++ G NV+AD L+R
Sbjct: 630 --GRLVRWQNWFSKYQFDVEHLEGVKNVLADCLTR 662
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 193 bits (490), Expect = 2e-48
Identities = 129/434 (29%), Positives = 217/434 (49%), Gaps = 26/434 (5%)
Query: 34 ISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLVKKKD----GKSRLCVDY 89
I + P + +P + E Q+++L I+PS SP AP LV + G R+ V+Y
Sbjct: 248 IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNY 307
Query: 90 RQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGH 149
+ +NKATV + Y LP D+L+ +RG +FS D KS + Q+ + E P TAF GH
Sbjct: 308 KAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH 367
Query: 150 YEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVLHV 209
YE+ V+PFG+ AP++F +M+ F F +F V++DDI+++S + ++H H+ +L
Sbjct: 368 YEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDIVVFSNNEEDHLLHVAMILQK 426
Query: 210 LREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTV---TEIRSF 266
+ + + K + + +++NFLG I + +E + + P T+ +++ F
Sbjct: 427 CNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQLQRF 484
Query: 267 VGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPE 326
+G+ Y +I A++ PL +++ P+ WT+ Q +K+ L P L P PE
Sbjct: 485 LGILTYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPE 544
Query: 327 EPYEVYCDASHQGLGCVL--------MQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFS 378
E + DAS G +L + Y S K E+NY ++D E A++ +
Sbjct: 545 EKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINT 604
Query: 379 LKIWRHYLYGCTFTIFSDHK------SLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPG 432
+K + YL F I +D+ +L Y D K R RW ++ Y F +++ G
Sbjct: 605 IKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKG 662
Query: 433 KANVVADALSRKMH 446
N AD LSR+ +
Sbjct: 663 TDNHFADFLSREFN 676
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 181 bits (458), Expect = 1e-44
Identities = 117/423 (27%), Positives = 214/423 (49%), Gaps = 16/423 (3%)
Query: 34 ISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLVK----KKDGKSRLCVDY 89
+ + P +P++ E Q+++L I+PS S +P LV+ ++ GK R+ V+Y
Sbjct: 229 VKVKPMSYSPSDREEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNY 288
Query: 90 RQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGH 149
+ +NKAT + + LP D+L+ +RG ++S D KS Q+ + E TAF GH
Sbjct: 289 KAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGH 348
Query: 150 YEYLVMPFGVTNAPAVF-MDYMNRIFHEFLDRFVVVFIDDILIYS-*DTKEHEEHLCQVL 207
Y++ V+PFG+ AP++F Y N +++ ++ V++DDIL++S KEH H+ +L
Sbjct: 349 YQWNVVPFGLKQAPSIFPKTYANSHSNQY-SKYCCVYVDDILVFSNTGRKEHYIHVLNIL 407
Query: 208 HVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAW-EQPKTVTEIRSF 266
+ + + K + + E++NFLG I + +E + + ++ + +++ F
Sbjct: 408 RRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRF 467
Query: 267 VGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPE 326
+G+ Y +I A I PL ++D + W + +K+ L + P L P+P
Sbjct: 468 LGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPN 527
Query: 327 EPYEVYCDASHQGLGCVLM----QHWKVVAYASRQLKTHEKNYPTHDLELTAIVFSLKIW 382
+ + DAS + G +L H + YAS K E+NY +++ EL A++ +K +
Sbjct: 528 DKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKF 587
Query: 383 RHYLYGCTFTIFSDHKSLKYLFDQKELNMRQR----RWMEFIKDYEFTLQYHPGKANVVA 438
YL F I +D+K+ + + R++ RW ++ Y+F +++ G NV A
Sbjct: 588 SIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFA 647
Query: 439 DAL 441
D L
Sbjct: 648 DFL 650
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 171 bits (434), Expect = 7e-42
Identities = 129/443 (29%), Positives = 215/443 (48%), Gaps = 49/443 (11%)
Query: 41 MAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLV-----------KKKDGKSRLCVDY 89
+ P + + Q+ L IRPS S + +V K+K GK R+ +Y
Sbjct: 1410 VTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNY 1469
Query: 90 RQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGH 149
+ LN+ T ++Y LP I+ ++ ++ ++SK DLKS + Q+ ++ E +P TAF
Sbjct: 1470 KLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKL 1529
Query: 150 YEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHLCQVLHV 209
YE+LVMPFG+ NAPA+F M+ +F + ++F+ V+IDDIL++S ++H +HL +L +
Sbjct: 1530 YEWLVMPFGLKNAPAIFQRKMDNVF-KGTEKFIAVYIDDILVFSETAEQHSQHLYTMLQL 1588
Query: 210 LREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTVTE--IRSFV 267
+E L +P+K + E++FLG + I + P + + + K T +RS++
Sbjct: 1589 CKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWL 1648
Query: 268 GLAGYYRRFIEGFAKIVGPLTQL-----TRKDQPFAWTEACKTSFQTLKERLTTSPVLIL 322
G+ Y R +I+ K+V PL Q ++ P W + +KE++ P L L
Sbjct: 1649 GILSYARNYIQDIGKLVQPLRQKMAPTGDKRMNPETW-----KMVRQIKEKVKNLPDLQL 1703
Query: 323 PQPEEPYEVYCDASHQGLGCVLMQHWK-----------VVAYASRQLKTHEKNYPTHDLE 371
P + + D G G V WK + AYAS + T D E
Sbjct: 1704 PPKDSFIIIETDGCMTGWGAVC--KWKMSKHDPRSTERICAYASGSFNPIKS---TIDAE 1758
Query: 372 LTAIVFSL-KIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQR-RWMEFIKDY------ 423
+ A + L K +YL I SD +++ +++ N R RW+ F D+
Sbjct: 1759 IQAAIHGLDKFKIYYLDKKELIIRSDCEAIIKFYNKTNENKPSRVRWLTF-SDFLTGLGI 1817
Query: 424 EFTLQYHPGKANVVADALSRKMH 446
T ++ GK N +ADALSR ++
Sbjct: 1818 TVTFEHIDGKHNGLADALSRMIN 1840
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 146 bits (369), Expect = 2e-34
Identities = 107/393 (27%), Positives = 186/393 (47%), Gaps = 16/393 (4%)
Query: 21 VEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLVKKKD 80
V +ID+ P+SI Y M+ + ++ + G +RP SPW P+L VKK
Sbjct: 21 VPIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPCRSPWNTPLLPVKKPG 80
Query: 81 GKS-RLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAV-FSKIDLKSSYHQIRVKTEDI 138
+ R D R++NK T+ +P +L+ L D ++ +DLK ++ + + +
Sbjct: 81 TRDYRPVQDLREVNKRTMDIHPTVPNPYNLLSTLSPDRTWYTVLDLKDAFFCLPLAPQSQ 140
Query: 139 PKTAFRTR------YGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVV----FIDD 188
AF R G + +P G N+P +F + ++R +F + V ++DD
Sbjct: 141 ELFAFEWRDPERGISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYVDD 200
Query: 189 ILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKV 248
+L+ + + +L L +K A+ K + +V +LG+++S+ + P ++
Sbjct: 201 LLLAAPTKEACIRGTKHLLRELGDKGYRASAKKAQICQTKVTYLGYILSEGKRWLTPGRI 260
Query: 249 ETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQ 308
ETV P+ E+R F+G AG+ R +I GFA++ PL LT++ PF W E +++F+
Sbjct: 261 ETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESAPFTWQEKHQSAFE 320
Query: 309 TLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQH---WK-VVAYASRQLKTHEKN 364
LKE L ++P L LP +P+ ++ D VL Q WK VAY S++L
Sbjct: 321 ALKEALLSAPALGLPDTSKPFTLFIDEKQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAG 380
Query: 365 YPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDH 397
+P + A +K G T+ + H
Sbjct: 381 WPPCLRIMAATAMLVKDSAKLTLGQPLTVITPH 413
Score = 57.0 bits (136), Expect = 2e-07
Identities = 71/292 (24%), Positives = 115/292 (39%), Gaps = 20/292 (6%)
Query: 564 KLNFWWPGMKKQVVEYVAACLTCQKAKVEHQR-PAGMLQSLDVPEWKWDSISMDFVVALP 622
K +F P + + +AC CQ+ R P G + P W+ +DF P
Sbjct: 718 KTDFLIPKAGTLIEQVTSACKVCQQVNAGATRVPEGKRTRGNRPGVYWE---IDFTEVKP 774
Query: 623 RTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRLHGVSTSIVSDSDPKF 682
+ + V VD + P R +A+ + EI G+ I SD+ P F
Sbjct: 775 H-YAGYKYLLVFVDTFSGWVEAYPTRQE-TAHMVAKKILEEIFPRFGLPKVIGSDNGPAF 832
Query: 683 TSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACVLD-NRGSWDDLQPLI 741
S L LG +L AY PQ GQ ER +++++ L L+ W L L
Sbjct: 833 VSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLA 892
Query: 742 EFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQQTTEKVKQIREKMR 801
N + G+ PYE LYG PL + S LQ + ++ ++ ++
Sbjct: 893 LLRARNTPN-RFGLTPYEILYGGP--PPLSTLLNSFSPSDPKTDLQARLKGLQAVQAQIW 949
Query: 802 ASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTPKFIGPY 853
+ + + + F+ GD V++R ++ G L P++ GPY
Sbjct: 950 TPLA-ELYRPGHPQTSYPFQVGDSVYVRWHRSQG---------LEPRWKGPY 991
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 145 bits (367), Expect = 4e-34
Identities = 106/390 (27%), Positives = 186/390 (47%), Gaps = 16/390 (4%)
Query: 24 VIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLVKKKDGKS 83
+ID+ P+SI Y M+ + ++ + G +RP SPW P+L VKK +
Sbjct: 167 IIDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRPCRSPWNTPLLPVKKPGTQD 226
Query: 84 -RLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGD-AVFSKIDLKSSYHQIRVKTEDIPKT 141
R D R++NK TV +P +L+ L+ D + ++ +DLK ++ + + +
Sbjct: 227 YRPVQDLREINKRTVDIHPTVPNPYNLLSTLKPDYSWYTVLDLKDAFFCLPLAPQSQELF 286
Query: 142 AFRTR------YGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVV----FIDDILI 191
AF + G + +P G N+P +F + ++R +F + V ++DD+L+
Sbjct: 287 AFEWKDPERGISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYVDDLLL 346
Query: 192 YS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETV 251
+ K + +L L EK A+ K + +V +LG+++S+ + P ++ETV
Sbjct: 347 AAPTKKACTQGTRHLLQELGEKGYRASAKKAQICQTKVTYLGYILSEGKRWLTPGRIETV 406
Query: 252 LAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLK 311
P+ E+R F+G AG+ R +I GFA++ PL LT++ PF W + +F+ LK
Sbjct: 407 ARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTEHQLAFEALK 466
Query: 312 ERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQH---WK-VVAYASRQLKTHEKNYPT 367
+ L ++P L LP +P+ ++ D VL Q WK VAY S++L +P
Sbjct: 467 KALLSAPALGLPDTSKPFTLFLDERQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPP 526
Query: 368 HDLELTAIVFSLKIWRHYLYGCTFTIFSDH 397
+ A +K G T+ + H
Sbjct: 527 CLRIMAATAMLVKDSAKLTLGQPLTVITPH 556
Score = 61.6 bits (148), Expect = 1e-08
Identities = 75/293 (25%), Positives = 118/293 (39%), Gaps = 22/293 (7%)
Query: 564 KLNFWWPGMKKQVVEYVAACLTCQKAKVEHQR-PAGMLQSLDVPEWKWDSISMDFVVALP 622
K +F P + + +AC CQ+ R PAG + P W+ +DF P
Sbjct: 861 KTDFLIPRASTLIEQVTSACKVCQQVNAGATRVPAGKRTRGNRPGVYWE---IDFTEVKP 917
Query: 623 RTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRLHGVSTSIVSDSDPKF 682
+ + V VD + P R +A+ + EI G+ I SD+ P F
Sbjct: 918 H-YAGYKYLLVFVDTFSGWVEAFPTRQE-TAHIVAKKILEEIFPRFGLPKVIGSDNGPAF 975
Query: 683 TSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACVLD-NRGSWDDLQPLI 741
S L LG +L AY PQ GQ ER +++++ L L+ W L L
Sbjct: 976 VSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLA 1035
Query: 742 EFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQQTTEKVKQIREKMR 801
N + G+ PYE LYG PL + S LQ + ++ ++ ++
Sbjct: 1036 LLRARNTPN-RFGLTPYEILYGGP--PPLSTLLNSFSPSNSKTDLQARLKGLQAVQAQIW 1092
Query: 802 ASQSRQKSYADQRRRTLE-FEEGDHVFLRVTQTTGVGRAIKSRKLTPKFIGPY 853
A + + Y +T F+ GD V++R ++ G L P++ GPY
Sbjct: 1093 APLA--ELYRPGHSQTSHPFQVGDSVYVRRHRSQG---------LEPRWKGPY 1134
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 142 bits (358), Expect = 4e-33
Identities = 65/131 (49%), Positives = 94/131 (71%), Gaps = 1/131 (0%)
Query: 84 RLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAF 143
R+C+DYR L K T+KN+YP+PR+DDL D+L F+K+DL+S Y Q+R+ D PKT
Sbjct: 7 RMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTC 66
Query: 144 RTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKEHEEHL 203
TRYG +E+ VMPFG+TNA A F + MN + +E+LD FVVV++DD+++Y+ + EH+
Sbjct: 67 VTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHI 126
Query: 204 CQVLHVLREKK 214
+ L V+RE K
Sbjct: 127 -KHLRVVRESK 136
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.328 0.141 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,198,477
Number of Sequences: 164201
Number of extensions: 4703380
Number of successful extensions: 14275
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 13846
Number of HSP's gapped (non-prelim): 272
length of query: 968
length of database: 59,974,054
effective HSP length: 120
effective length of query: 848
effective length of database: 40,269,934
effective search space: 34148904032
effective search space used: 34148904032
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0306.4