BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0304.9
(156 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HS7L_SBYV (P37092) Heat shock protein 70 homolog 32 0.75
TRUD_AQUAE (O67616) tRNA pseudouridine synthase D (EC 4.2.1.70) ... 30 2.2
RAI3_MOUSE (Q8BHL4) Retinoic acid induced 3 protein (G protein-c... 30 2.8
HEM1_PYRAE (Q8ZYV6) Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR) 30 2.8
OM40_PORGI (Q9S3R8) Outer membrane protein 40 precursor (Omp40) ... 29 4.8
ENTE_ECOLI (P10378) Enterobactin synthetase component E (Enteroc... 28 8.3
ENTE_ECO57 (Q8XBV3) Enterobactin synthetase component E (Enteroc... 28 8.3
COXA_DROME (Q94514) Cytochrome c oxidase polypeptide Va, mitocho... 28 8.3
APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 28 8.3
>HS7L_SBYV (P37092) Heat shock protein 70 homolog
Length = 598
Score = 31.6 bits (70), Expect = 0.75
Identities = 26/102 (25%), Positives = 45/102 (43%), Gaps = 20/102 (19%)
Query: 32 LVYSYDGGGAEEHMFRVPVDHTFFFDTQHSSLQL-----------HLYNKRRILGPTQLG 80
LVY + GG + + +++TF + L HLYNK ++ P
Sbjct: 201 LVYDFGGGTFDVSVISA-LNNTFVVRASGGDMNLGGRDIDKAFVEHLYNKAQL--PVNY- 256
Query: 81 WCMIPALDIGFLNLRDSAAVRYLSYRLRATDGCRSDIIINLS 122
+DI FL S V +L++ + + G R D+++N+S
Sbjct: 257 -----KIDISFLKESLSKKVSFLNFPVVSEQGVRVDVLVNVS 293
>TRUD_AQUAE (O67616) tRNA pseudouridine synthase D (EC 4.2.1.70)
(Pseudouridylate synthase) (Uracil hydrolyase)
Length = 385
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Query: 84 IPALDIGFLNLRDSAAV--RYLSY------RLRATDGCRSDIIINLSVKLLGSPD 130
IP +IGF L+D AV +Y+S ++R DG R++ NL +K LG D
Sbjct: 53 IPLKNIGFAGLKDKKAVTEQYISVKDLNEEKIRKMDGYRTE---NLELKFLGFSD 104
>RAI3_MOUSE (Q8BHL4) Retinoic acid induced 3 protein (G
protein-coupled receptor family C group 5 member A)
(Retinoic acid induced gene 1 protein) (RAIG-1)
Length = 356
Score = 29.6 bits (65), Expect = 2.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 61 SSLQLHLYNKRRIL-GPTQLGWCMIPALDIGFLNLRDSAAVRYLSYRLRATD 111
S L H +N +++ G L W +I +L +GF ++D A+ YL + T+
Sbjct: 112 SCLLAHAFNLIKLVRGRKPLSWLVILSLAVGFSLVQDVIAIEYLVLTMNRTN 163
>HEM1_PYRAE (Q8ZYV6) Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR)
Length = 397
Score = 29.6 bits (65), Expect = 2.8
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 98 AAVRYLSYRL-RATDGCRSDIIINLSVKLLGSPDTCQTVIGIPVTAVRGVDKKQLAARWS 156
++V L Y + R DG II++L V +P G+PV VR D KQLA ++S
Sbjct: 238 SSVHSLEYVIDRVPDGAVVKIIVDLGVPQTVAP-------GLPVRVVRLSDLKQLAEKYS 290
>OM40_PORGI (Q9S3R8) Outer membrane protein 40 precursor (Omp40)
(PG33)
Length = 380
Score = 28.9 bits (63), Expect = 4.8
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 6 ISMVSVEGLGKYSSSYFITLTNLSNHLVYSYDGGGAEEHMFRVPVDHTFFFDTQHSSLQL 65
+S+V G+GK+ YF T + +Y + G E +H +F H
Sbjct: 70 LSIVPTFGIGKWHEPYFGTRLQFTGFDIYGFPQGSKER-------NHN-YFGNAHLDFMF 121
Query: 66 HLYNKRRILGPTQLGWCMIPALDIGF 91
L N + P ++ + +IP IGF
Sbjct: 122 DLTNYFGVYRPNRV-FHIIPWAGIGF 146
>ENTE_ECOLI (P10378) Enterobactin synthetase component E
(Enterochelin synthase E) [Includes:
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58)
(Dihydroxybenzoic acid-activating enzyme);
S-dihydroxybenzoyltransferase (EC 2.3.1.-)]
Length = 536
Score = 28.1 bits (61), Expect = 8.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 129 PDTCQTVIGIPVTAVRGVDKKQL 151
PD + V +P+TAV VDKKQL
Sbjct: 504 PDRVECVDSLPLTAVGKVDKKQL 526
>ENTE_ECO57 (Q8XBV3) Enterobactin synthetase component E
(Enterochelin synthase E) [Includes:
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58)
(Dihydroxybenzoic acid-activating enzyme);
S-dihydroxybenzoyltransferase (EC 2.3.1.-)]
Length = 536
Score = 28.1 bits (61), Expect = 8.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 129 PDTCQTVIGIPVTAVRGVDKKQL 151
PD + V +P+TAV VDKKQL
Sbjct: 504 PDRVECVDSLPLTAVGKVDKKQL 526
>COXA_DROME (Q94514) Cytochrome c oxidase polypeptide Va,
mitochondrial precursor (EC 1.9.3.1)
Length = 149
Score = 28.1 bits (61), Expect = 8.3
Identities = 23/79 (29%), Positives = 34/79 (42%), Gaps = 3/79 (3%)
Query: 79 LGWCMIPALDIGFLNLRDSAAVRYLSYRLRATDGCR---SDIIINLSVKLLGSPDTCQTV 135
LG ++P+ I LR S V ++ +R +GC+ D L LL
Sbjct: 66 LGMDLVPSPKIIEAGLRASRRVNDIALAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQE 125
Query: 136 IGIPVTAVRGVDKKQLAAR 154
+GIP G DK +LA +
Sbjct: 126 LGIPTIEELGYDKPELALK 144
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein
CEX) (Fragment)
Length = 449
Score = 28.1 bits (61), Expect = 8.3
Identities = 19/46 (41%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Query: 29 SNHLVYSYDGGGAEEHMFRVPVDHTFFFDTQHS-SLQLHLYNKRRI 73
SN L+Y+Y G GA+ V T D+ S LQL+ Y RRI
Sbjct: 269 SNDLIYTYFGNGAQHLKNDVDSFTTMMADSAASFVLQLYGYGARRI 314
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,794,069
Number of Sequences: 164201
Number of extensions: 703325
Number of successful extensions: 1002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 9
length of query: 156
length of database: 59,974,054
effective HSP length: 101
effective length of query: 55
effective length of database: 43,389,753
effective search space: 2386436415
effective search space used: 2386436415
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0304.9