BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0304.11
(1797 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains... 185 1e-45
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog 160 2e-38
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog 160 3e-38
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ... 159 7e-38
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type... 94 3e-18
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310... 88 2e-16
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250... 74 3e-12
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type... 71 3e-11
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 70 4e-11
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III 65 2e-09
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 57 4e-07
PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type... 47 4e-04
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type... 46 0.001
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro... 40 0.058
AI1M_YEAST (P03875) COX1/OXI3 intron 1 protein 39 0.099
RPC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC... 37 0.38
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem... 37 0.64
RPC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC... 36 1.1
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem... 35 1.9
RPC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC... 35 1.9
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1300
Score = 185 bits (469), Expect = 1e-45
Identities = 217/916 (23%), Positives = 392/916 (42%), Gaps = 78/916 (8%)
Query: 426 LISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPI 485
LIS N G+ + L + KQ P+ L ET R L+ + F + +
Sbjct: 36 LISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKDRHYLRVK-GWKTIFQANGL 94
Query: 486 GTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTF--IYGEPLRQRRQALWD 543
G+A+ + + + ++ I K K++ E + IY P + + D
Sbjct: 95 KKQAGVAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYA-PNARAATFIRD 153
Query: 544 SISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDI---- 599
++ +LK +GDFN L ++ +Q LNR + + + +D+
Sbjct: 154 TLVKLKAYIAPHTIIVGDFNTPLSSKDRSW-----KQKLNRDTVKL-TEVMKQMDLTDIY 207
Query: 600 -----KGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILD 654
K YT+ S P F K+D ++ + + + Y + +V P + SDH L L
Sbjct: 208 RTFYPKTKGYTFFSAPHGTF---SKIDHIIGHKTGLNRYKNIEIV--PCILSDHHGLRLI 262
Query: 655 PVPKHRSGRQ--------------FKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQN 700
+G+ E E KD + E+ T P N W+T++
Sbjct: 263 FNNNINNGKPTFTWKLNNTLLNDTLVKEGIKKEIKDFLEFNENEATTYP---NLWDTMKA 319
Query: 701 KVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHH---KIDWNEMAQFKAQIRQL 757
++ I L+ +K R L L ++ ++ + + E+ + + +I Q+
Sbjct: 320 FLRGKLIALSASKK---KRETAHTSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQV 376
Query: 758 WRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMEN 817
+ + ++R + + ++ T R + I+++++ G E +
Sbjct: 377 ETRRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKIRNEKGDITTDPEEIQNT 436
Query: 818 ITDHFQLIF--KSEQVTQIQECLSC--VPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLK 873
I ++ ++ K E + ++ + L VPKL +++ L ++ +EI+ V +S+ + K
Sbjct: 437 IRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDH-LNSPISPKEIEAVINSLPTKK 495
Query: 874 APGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMAN-- 931
+PGPDG + F++T + P + + H TL E + L+PK P +
Sbjct: 496 SPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPK-PQKDPTKIE 554
Query: 932 QYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQH 991
+RPIS N KI++K++ R++ + II P+Q FI NI + + H +
Sbjct: 555 NFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINK 614
Query: 992 RGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGY 1051
+ K+H+ I LD KA+D+++ F+ K L G GP+++++ + KVNG
Sbjct: 615 L--KDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGE 672
Query: 1052 LSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFA 1111
+ G RQG PLSPYLF +V++VL+ I Q K I+GI++ I+ L A
Sbjct: 673 KLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQK---EIKGIQIGKEEVKISLL--A 727
Query: 1112 DDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKS-SMSTSKHIPTLLKTQMTNIFQI 1170
DD +V+ + + L+N+F +IN++KS + +K+ + + T F I
Sbjct: 728 DDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRETTPFSI 787
Query: 1171 PTWEEPGHYLGLPAVWGRSK--TRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQS 1228
T YLG+ + +K+ +KE + WK++ + G+ ++K I
Sbjct: 788 VT--NNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAILP 845
Query: 1229 IPTYAMAVTP--FPKGFCKELDSLVARFWWSNNKKSRGIH--LKDWHSLTCSKKEGGMGF 1284
Y P P F EL+ + +F W NNKK R LKD + GG+
Sbjct: 846 KAIYRFNAIPIKIPTQFFNELEGAICKFVW-NNKKPRIAKSLLKD------KRTSGGITM 898
Query: 1285 REFHLQNLAHMTKQAW 1300
+ L A + K AW
Sbjct: 899 PDLKLYYRAIVIKTAW 914
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
Length = 1260
Score = 160 bits (406), Expect = 2e-38
Identities = 192/921 (20%), Positives = 382/921 (40%), Gaps = 78/921 (8%)
Query: 424 MRLISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVD 483
+ + S N G+ L + K KP I + E+ RLK +S+ F +
Sbjct: 7 LSIFSINVNGLNCPLKRHRLADWIQKLKPDICCIQESHLTLKDKYRLKVK-GWSSIFQAN 65
Query: 484 PIGTAGGLALFWNKEC----TVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQ 539
G+A+ + T D + ++I V + I + P Q
Sbjct: 66 GKQKKAGIAILFADAIGFKPTKIRKDKDGHFIFVKGNTQYDEISIINIYA---PNHNAPQ 122
Query: 540 ALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDI 599
+ ++++ + L +GDFN L ++ S++ L+ ++ + ++D+
Sbjct: 123 FIRETLTDMSNLISSTSIVVGDFNTPLAVLDRSSKKKLSKEILDL------NSTIQHLDL 176
Query: 600 KGCKYTWLSNPRE------GFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLIL 653
T+ N E T K+D +L + S +L + +P + SDH +
Sbjct: 177 TDIYRTFHPNKTEYTFFSSAHGTYSKIDHILGHKS--NLSKFKKIEIIPCIFSDHHGI-- 232
Query: 654 DPVPKHRSGRQFKYEAFWNEH--------------KDCSKVVEDAWNTTPQGENDWETLQ 699
V + + + W + K+ +K +E N +N W+T +
Sbjct: 233 -KVELNNNRNLHTHTKTWKLNNLMLKDTWVIDEIKKEITKFLEQNNNQDTNYQNLWDTAK 291
Query: 700 NKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWN---EMAQFKAQIRQ 756
++ I L + K T +E+ L L + E+H + E+ + +A++ +
Sbjct: 292 AVLRGKFIALQAFLKKT---EREEVNNLMGHLKQLEKEEHSNPKPSRRKEITKIRAELNE 348
Query: 757 LWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVME 816
+ + + +S+ + + ++ T ++R ++ I +++G + +
Sbjct: 349 IENKRIIQQINKSKSWFFEKINKIDKPLANLTRKKRVKSLISSIRNGNDEITTDPSEIQK 408
Query: 817 NITDHFQLIF--KSEQVTQIQECLSC--VPKLIPTDLNNKLMETVTDEEIKVVAHSMDSL 872
+ ++++ ++ K E + +I + L +P+L ++ L ++ EI ++
Sbjct: 409 ILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVE-MLNRPISSSEIASTIQNLPKK 467
Query: 873 KAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQ 932
K+PGPDG F++T + P + ++ + L E + L+PK P + +
Sbjct: 468 KSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPK-PGKDPTRK 526
Query: 933 --YRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQ 990
YRPIS N KI++K++ R++ + II +Q FI NI + + +Q
Sbjct: 527 ENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNI---RKSINVIQ 583
Query: 991 HRGR-EHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVN 1049
H + ++KDH+ + +D KA+D ++ F+ + L G G ++ L+ + + +N
Sbjct: 584 HINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILN 643
Query: 1050 GYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLF 1109
G + + + G RQG PLSP LF +VM+VL+ I + K I+GI + I
Sbjct: 644 GVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKA---IKGIHIGSEE--IKLSL 698
Query: 1110 FADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQ 1169
FADD +V+ + T+ ++++ +S+ S +INT KS + KT +I
Sbjct: 699 FADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSI-P 757
Query: 1170 IPTWEEPGHYLGLPAVWGRSKTRAL-----AWIKERMKEKIAGWKEVLLNQAGKEVLIKS 1224
+ YLG V+ + L +++ + E + WK + + G+ ++K
Sbjct: 758 FTVVPKKMKYLG---VYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKM 814
Query: 1225 VIQSIPTYAMAVTPF--PKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGM 1282
I Y P P + K+L+ ++ F W+ K L L+ K GG+
Sbjct: 815 SILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQIAKTL-----LSNKNKAGGI 869
Query: 1283 GFREFHLQNLAHMTKQAWRIH 1303
+ L + + K AW H
Sbjct: 870 TLPDLRLYYKSIVIKTAWYWH 890
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
Length = 1259
Score = 160 bits (405), Expect = 3e-38
Identities = 213/919 (23%), Positives = 389/919 (42%), Gaps = 74/919 (8%)
Query: 421 NVSMRLISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFF 480
N + +++ N G+ A L Q PS+ + ET RLK + N +
Sbjct: 4 NSHITILTLNVNGLNAPIKRHRLANWIKSQDPSVCCIQETHLTCRDTHRLKIK-GWRNIY 62
Query: 481 CVDPIGTAGGLALFWNKECTVEIL----DSNQNYIHVM--ITEKEKVIGAEYTFIYGEPL 534
+ G+A+ + + + D +YI V I ++E I Y G P
Sbjct: 63 QANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP- 121
Query: 535 RQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNAL 594
R +Q L D L+ +GDFN L L ++Q +N+ ++S AL
Sbjct: 122 RFIKQVLSD----LQRDLDSHTIIMGDFNTPL-----STLDRSTRQKINKDIQELNS-AL 171
Query: 595 ANIDI---------KGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVS 645
D+ K +YT+ S P T K D +L + + S ++ +
Sbjct: 172 HQADLIDIYRTLHPKSTEYTFFSAPHH---TYSKTDHILGSKTLLSKCKRTEIITNCL-- 226
Query: 646 SDHSPLILD-PVPKHRSGRQFKYEA-------FW--NEHK-DCSKVVEDAWNTTPQGEND 694
SDHS + L+ + K ++ +W NE K + K E N +N
Sbjct: 227 SDHSAIKLELRIKKLTQNHSTTWKLNNLLLNDYWVHNEMKAEIKKFFETNENKDTTYQNL 286
Query: 695 WETLQNKVKSCQIGLTKWQ-KVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQ 753
W+T + + I L + K S+ D I +LK L + E+ + +A+
Sbjct: 287 WDTAKAVCRGKFIALNAHKRKQERSKIDTLISQLK-ELEKQEQTNSKASRRQEIIKIRAE 345
Query: 754 IRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEG 813
++++ Q+ L SR + + ++ ++R +N+I +K+ G
Sbjct: 346 LKEIETQKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDTIKNDRGDITTDPTE 405
Query: 814 VMENITDHFQLIF--KSEQVTQIQECLSC--VPKLIPTDLNNKLMETVTDEEIKVVAHSM 869
+ I ++++ ++ K E + ++ + L +P+L ++ + L +T EI+ + +S+
Sbjct: 406 IQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVES-LNRPITSSEIEAIINSL 464
Query: 870 DSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEM 929
+ K+PGP+G F++ + + P + + S L E + L+PK P +
Sbjct: 465 PNKKSPGPEGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPK-PGRDT 523
Query: 930 ANQ--YRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFH 987
+ +RPIS N KI++K++ +++ + +I +Q FI NI + +
Sbjct: 524 TKKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPAMQGWFNI---RKSIN 580
Query: 988 ALQHRGR-EHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKY 1046
+QH R + +H+ I +D KA+D+++ F+ K L G G ++ ++ + +
Sbjct: 581 IIQHINRTKDTNHMIISIDAEKAFDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANI 640
Query: 1047 KVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCIT 1106
+NG + G RQG PLSP L +V++VL+ I Q K I+GI+L ++
Sbjct: 641 ILNGQKLEAPPLKTGTRQGCPLSPLLPNIVLEVLARAIRQEKE---IKGIQLGKEEVKLS 697
Query: 1107 HLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTN 1166
FADD +V+ + A + ++L++ FS S +IN KS + ++Q+ +
Sbjct: 698 --LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTN-NRQTESQIMS 754
Query: 1167 IFQIPTWEEPGHYLGLPA---VWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIK 1223
+ YLG+ V K + E +KE WK + + G+ ++K
Sbjct: 755 ELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNE-IKEDTNKWKNIPCSWVGRINIVK 813
Query: 1224 SVIQSIPTYAMAVTPF--PKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGG 1281
I Y P P F EL+ +F W N K++ H+ +L+ K GG
Sbjct: 814 MAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIW-NQKRA---HIAK-STLSQKNKAGG 868
Query: 1282 MGFREFHLQNLAHMTKQAW 1300
+ +F L A +TK AW
Sbjct: 869 ITLPDFKLYYKATVTKTAW 887
>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein (ORF
2)
Length = 1308
Score = 159 bits (402), Expect = 7e-38
Identities = 170/746 (22%), Positives = 323/746 (42%), Gaps = 48/746 (6%)
Query: 560 GDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANI----DIKGCKYTWLSNPREGFV 615
GDFN TL +++ + + S + R + +L ++ + + +T++ R+G V
Sbjct: 142 GDFNYTLDARDRN-VPKKRDSSESVLRELIAHFSLVDVWREQNPETVAFTYV-RVRDGHV 199
Query: 616 TREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPKHRSGRQFKYEAFWNEHK 675
++ ++DR+ + S + + P + L + P + + E +
Sbjct: 200 SQSRIDRIYISSHLMSRAQSSTIRLAPFSDHNCVSLRMSIAPSLPKAAYWHFNNSLLEDE 259
Query: 676 DCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLT----KWQKVTFSRADKEIEKLKARL 731
+K V D W ++++ TL ++ L ++ K + + EIE L +
Sbjct: 260 GFAKSVRDTWRGWRAFQDEFATLNQWWDVGKVHLKLLCQEYTKSVSGQRNAEIEALNGEV 319
Query: 732 SSMHNEDHHKIDWNEMAQF---KAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATT 788
+ D ++ K +R + +++ RSR+Q DR + FF+A
Sbjct: 320 LDLEQRLSGSEDQALQCEYLERKEALRNMEQRQARGAFVRSRMQLLCDMDRGSRFFYALE 379
Query: 789 IQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQ--IQECLSCVPKLIP 846
++ R +I L G+ +E E + + +Q +F + ++ +E +P +
Sbjct: 380 KKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDACEELWDGLP--VV 437
Query: 847 TDLNNKLMET-VTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFN 905
++ + +ET +T +E+ M K+PG DGL FF+ W+ +GP+ V+ F
Sbjct: 438 SERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFK 497
Query: 906 TSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPN 965
L +++L+PK L + +RP+S + YKI++K I RLK L ++I P+
Sbjct: 498 KGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPD 557
Query: 966 QSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLA-IKLDMSKAYDRVEWEFLEKALLA 1024
QS + R I DN+ + ++ H + G LA + LD KA+DRV+ ++L L A
Sbjct: 558 QSYTVPGRTIFDNVFLIRDLLHFARRTGLS----LAFLSLDQEKAFDRVDHQYLIGTLQA 613
Query: 1025 YGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMI 1084
Y F +V + + K+N L+ RG+RQG PLS L+ L ++ ++
Sbjct: 614 YSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLL 673
Query: 1085 LQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRIN 1144
+ + G+ L + +ADD ++ A+ + + +++ASS RIN
Sbjct: 674 -----RKRLTGLVLKEPDMRVVLSAYADDVILVAQ-DLVDLERAQECQEVYAAASSARIN 727
Query: 1145 TSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEP-GHYLGL-PAVWGRSKTRALAWIKERMK 1202
SKSS +L + F+ +WE YLG+ + ++ ++E +
Sbjct: 728 WSKSSGLLE---GSLKVDFLPPAFRDISWESKIIKYLGVYLSAEEYPVSQNFIELEECVL 784
Query: 1203 EKIAGWK--EVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNK 1260
++ WK +L+ G+ ++I ++ S Y + + F ++ + F W
Sbjct: 785 TRLGKWKGFAKVLSMRGRALVINQLVASQIWYRLICLSPTQEFIAKIQRRLLDFLWIG-- 842
Query: 1261 KSRGIHLKDWHSLTCSK---KEGGMG 1283
K W S S KEGG G
Sbjct: 843 -------KHWVSAGVSSLPLKEGGQG 861
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
retrotransposable element R2DM [Contains: Protease (EC
3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
Endonuclease]
Length = 1057
Score = 94.0 bits (232), Expect = 3e-18
Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 11/243 (4%)
Query: 839 SCVPKLIPTDLN-NKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVC 897
SC ++I D + ++ +T+++++ S+ S +PGPDG+ K+ V +
Sbjct: 325 SCSGEVIQMDHSLERVWSAITEQDLRASRVSLSS--SPGPDGITP---KSAREVPSGIML 379
Query: 898 SVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGE 957
+++ L I +PK + + +RPIS + L + ++ ++ RL
Sbjct: 380 RIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSS 439
Query: 958 LNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEF 1017
+N P Q F+ DN I + L+H + + LD+SKA+D +
Sbjct: 440 IN--WDPRQRGFLPTDGCADNATIVDLV---LRHSHKHFRSCYIANLDVSKAFDSLSHAS 494
Query: 1018 LEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVM 1077
+ L AYG +V V N G +G+ S +++P RG++QGDPLSP LF LVM
Sbjct: 495 IYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVM 554
Query: 1078 DVL 1080
D L
Sbjct: 555 DRL 557
>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
(ORF154)
Length = 154
Score = 87.8 bits (216), Expect = 2e-16
Identities = 46/123 (37%), Positives = 74/123 (59%), Gaps = 2/123 (1%)
Query: 1228 SIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKE-GGMGFRE 1286
++P YAM+ K CK+L S + FWWS+ + R I W L SK++ GG+GFR+
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 1287 FHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA-NQRQEL 1345
N A + KQ++RI + PHTL+++++++ YFP SS ++ + S+ WR+ +EL
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121
Query: 1346 LDR 1348
L R
Sbjct: 122 LSR 124
>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
(ORF102)
Length = 122
Score = 74.3 bits (181), Expect = 3e-12
Identities = 35/67 (52%), Positives = 47/67 (69%)
Query: 1048 VNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITH 1107
+NG P RGLRQGDPLSPYLF+L +VLS + +A+ QG + GI++S ++P I H
Sbjct: 14 INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73
Query: 1108 LFFADDS 1114
L FADD+
Sbjct: 74 LLFADDT 80
>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 711
Score = 70.9 bits (172), Expect = 3e-11
Identities = 66/285 (23%), Positives = 122/285 (42%), Gaps = 12/285 (4%)
Query: 920 LVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIK-DRLIQDN 978
L+PK LE + +RPI+ + L +++ +++ RL+ + + P Q + + D + ++
Sbjct: 63 LIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE--LHPAQKGYARIDGTLVNS 120
Query: 979 ILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNL 1038
+L+ I R + K + + LD+ KA+D V + +AL G + +
Sbjct: 121 LLLDTYI----SSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGS 176
Query: 1039 VRGVSYKYKVN-GYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIK 1097
+ + +V G +RK +RG++QGDPLSP+LF V+D L + G G +
Sbjct: 177 LSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGGTIGEE 236
Query: 1098 LSPSTPCITHLFFADDSLVFAKATQQEAYHFVQL----LNTFSSASSQRINTSKSSMSTS 1153
P L +D+ V T +F +L LN S S + + +
Sbjct: 237 KIPVLAFADDLLLLEDNDVLLPTTLATVANFFRLRGMSLNAKKSVSISVAASGGVCIPRT 296
Query: 1154 KHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIK 1198
K + + ++ T+ GH+ GL + W+K
Sbjct: 297 KPFLRVDNVLLPVTDRMQTFRYLGHFFGLSGAAKPTVYNLSRWLK 341
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 70.5 bits (171), Expect = 4e-11
Identities = 71/270 (26%), Positives = 122/270 (44%), Gaps = 19/270 (7%)
Query: 853 LMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPC 912
L ++++EIK V + A GPDG+ T WN + + S+ +
Sbjct: 315 LWRPISNDEIKEVEACKRT--AAGPDGMT----TTAWNSIDECIKSLFNMIMYHGQCPRR 368
Query: 913 INETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKD 972
++ L+PK P +RP+S + + +++ R+ GE + T ++ + D
Sbjct: 369 YLDSRTVLIPKEPGTMDPACFRPLSIASVALRHFHRILANRI-GEHGLLDTRQRAFIVAD 427
Query: 973 RLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWV 1032
+ ++ L++ I A R + ++AI LD+ KA+D VE + AL
Sbjct: 428 GVAENTSLLSAMIKEA---RMKIKGLYIAI-LDVKKAFDSVEHRSILDALRRKKLPLEMR 483
Query: 1033 SLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGH 1092
+ +M + R + +V R P RG+RQGDPLSP LF VMD + + +N G
Sbjct: 484 NYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAVLRRL--PENTGF 541
Query: 1093 IQGIKLSPSTPCITHLFFADDSLVFAKATQ 1122
+ G + I L FADD ++ A+ +
Sbjct: 542 LMGAEK------IGALVFADDLVLLAETRE 565
>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
Length = 1222
Score = 65.1 bits (157), Expect = 2e-09
Identities = 41/178 (23%), Positives = 86/178 (48%), Gaps = 4/178 (2%)
Query: 904 FNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIIT 963
F+ S + ++ +PK + + YRPIS + +I+ ++I +R++ E + +++
Sbjct: 656 FSDSAIPNRWKHAVIIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLS 715
Query: 964 PNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALL 1023
P+Q F+ R +++ + ++H++ + K + D +KA+D+V L K L
Sbjct: 716 PHQHGFLNFRSCPSSLVRSISLYHSIL---KNEKSLDILFFDFAKAFDKVSHPILLKKLA 772
Query: 1024 AYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIP-QRGLRQGDPLSPYLFVLVMDVL 1080
+G S + ++ K+N ++S P G+ QG P LF+L ++ L
Sbjct: 773 LFGLDKLTCSWFKEFLHLRTFSVKINKFVSSNAYPISSGVPQGSVSGPLLFILFINDL 830
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 57.4 bits (137), Expect = 4e-07
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 987 HALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKY 1046
H ++ R + K + + LD+ KA+D V + +A+ A+G +M+ +
Sbjct: 11 HYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIMSTITDAYTNI 70
Query: 1047 KVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCIT 1106
V G + K + G++QGDPLSP LF +V+D L + + G ++P+ I
Sbjct: 71 VVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRLNDEQ-----PGASMTPACK-IA 124
Query: 1107 HLFFADDSLV 1116
L FADD L+
Sbjct: 125 SLAFADDLLL 134
>PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1004
Score = 47.4 bits (111), Expect = 4e-04
Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 41/257 (15%)
Query: 838 LSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVC 897
L + + +P DL M+ V+D + K+PGPDG+ G + W + PE
Sbjct: 394 LKAIARPLPPDLE---MDEVSDSVRRCKVR-----KSPGPDGIVGEMVRAVWGAI-PEYM 444
Query: 898 SVVHSFFNTSTLSPCINETLVALVPKIPSLEM-----------ANQYRPISCCNYLYKII 946
++ C+ E+ KI SL + YRPI + L K++
Sbjct: 445 FCLY--------KQCLLESYFPQKWKIASLVILLKLLDRIRSDPGSYRPICLLDNLGKVL 496
Query: 947 SKVIVARLKGELNDI-ITPNQSAFIKDRLIQDNILIAHEIFHALQHRGR--EHKDHLAIK 1003
++V RL +L D+ ++P Q AF + +D + +Q E K + +
Sbjct: 497 EGIMVKRLDQKLMDVEVSPYQFAFTYGKSTED-------AWRCVQRHVECSEMKYVIGLN 549
Query: 1004 LDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLR 1063
+D A+D + W L L L M+ G Y + RK + RG
Sbjct: 550 IDFQGAFDNLGW--LSMLLKLDEAQSNEFGLWMSYFGGRKVYYVGKTGIVRKDV-TRGCP 606
Query: 1064 QGDPLSPYLFVLVMDVL 1080
QG P ++ LVM+ L
Sbjct: 607 QGSKSGPAMWKLVMNEL 623
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 869
Score = 45.8 bits (107), Expect = 0.001
Identities = 69/300 (23%), Positives = 121/300 (40%), Gaps = 26/300 (8%)
Query: 854 METVTDEE--IKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSP 911
MET+ D I++ + + K GPDG+ WN + ++++ F P
Sbjct: 152 METLWDPVSLIEIKSARASNEKGAGPDGVT----PRSWNALDDRYKRLLYNIFVFYGRVP 207
Query: 912 C-INETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFI 970
I + PKI +RP+S C+ + + +K++ R Q+A++
Sbjct: 208 SPIKGSRTVFTPKIEGGPDPGVFRPLSICSVILREFNKILARRFVSCYT--YDERQTAYL 265
Query: 971 KDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGP 1030
+ N+ + I + +E H+AI LD+ KA++ V L A+ G
Sbjct: 266 PIDGVCINVSMLTAIIAEAKRLRKEL--HIAI-LDLVKAFNSVYHSALIDAITEAGCPPG 322
Query: 1031 WVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQ 1090
V + ++ V + + G I G+ QGDPLS LF L + + N+
Sbjct: 323 VVDYIADMYNNVITEMQFEGKCELASI-LAGVYQGDPLSGPLFTLAYE---KALRALNNE 378
Query: 1091 GH--IQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKS 1148
G I ++++ S ++DD L+ A T H + + RIN+ KS
Sbjct: 379 GRFDIADVRVNASA-------YSDDGLLLA-MTVIGLQHNLDKFGETLAKIGLRINSRKS 430
>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2)
Length = 1021
Score = 40.0 bits (92), Expect = 0.058
Identities = 75/380 (19%), Positives = 134/380 (34%), Gaps = 46/380 (12%)
Query: 846 PTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFN 905
PT + ++ + E+ + S ++PG DG+NG K W + + S+
Sbjct: 423 PTAIAEEVPPALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIR 482
Query: 906 TSTLSPCINETLVALVPKIPSLEMA--NQYRPISCCNYLYKIISKVIVARLKGELNDIIT 963
V + K P + + YR I K++ ++V R++ L +
Sbjct: 483 LGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCR 542
Query: 964 PNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDH-LAIKLDMSKAYDRVEWEFLEKAL 1022
Q F + R ++D H G + L +D A+D VEW L
Sbjct: 543 -WQFGFRQGRCVED------AWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRL 595
Query: 1023 LAYGF--CGPWVSLVMN---LVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVM 1077
G G W S ++R S +V RG QG P+++ ++M
Sbjct: 596 ADLGCREMGLWQSFFSGRRAVIRSSSGTVEVP--------VTRGCPQGSISGPFIWDILM 647
Query: 1078 DVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKAT-----QQEAYHFVQLL 1132
DVL L P +ADD L+ + +++ + ++
Sbjct: 648 DVL-----------------LQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIV 690
Query: 1133 NTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTR 1192
T+ + ++TSK+ + K T +P + YLG+ G
Sbjct: 691 ETWGAEVGDCLSTSKTVIMLLKGALRRAPTVRFAGRNLP-YVRSCRYLGITVSEGMKFLT 749
Query: 1193 ALAWIKERMKEKIAGWKEVL 1212
+A +++RM + VL
Sbjct: 750 HIASLRQRMTGVVGALARVL 769
>AI1M_YEAST (P03875) COX1/OXI3 intron 1 protein
Length = 834
Score = 39.3 bits (90), Expect = 0.099
Identities = 56/264 (21%), Positives = 103/264 (38%), Gaps = 57/264 (21%)
Query: 934 RPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRG 993
RP+S N KI+ +V+ L + ++ + F K+ Q I +F
Sbjct: 323 RPLSVGNPRDKIVQEVMRMILDTIFDKKMSTHSHGFRKNMSCQTAIWEVRNMFGG----- 377
Query: 994 REHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLS 1053
+ I++D+ K +D + + + K L Y ++ LV L+R GY+
Sbjct: 378 ----SNWFIEVDLKKCFDTISHDLIIKELKRYISDKGFIDLVYKLLRA--------GYID 425
Query: 1054 RK---YIPQRGLRQGDPLSPYLFVLVMDV--------------------------LSHMI 1084
K + P GL QG +SP L +VM + LS MI
Sbjct: 426 EKGTYHKPMLGLPQGSLISPILCNIVMTLVDNWLEDYINLYNKGKVKKQHPTYKKLSRMI 485
Query: 1085 LQAK--------NQGHIQG---IKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLN 1133
+AK ++ +G I P+ + ++ +ADD L+ ++ + + LN
Sbjct: 486 AKAKMFSTRLKLHKERAKGPTFIYNDPNFKRMKYVRYADDILIGVLGSKNDCKMIKRDLN 545
Query: 1134 TFSSASSQRINTSKSSMSTSKHIP 1157
F ++ +N K+ ++ + P
Sbjct: 546 NFLNSLGLTMNEEKTLITCATETP 569
>RPC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1527
Score = 37.4 bits (85), Expect = 0.38
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1037 NLVRGVSY-KYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQG 1095
NL G+S +Y ++ Y +RK + +R D + YL +++V+ H+I++ ++ G IQG
Sbjct: 168 NLREGLSLTEYIISCYGARKGVVDTAVRTAD--AGYLTRRLVEVVQHIIVRRRDCGTIQG 225
Query: 1096 IKLSPSTPCITHLF 1109
I +SP LF
Sbjct: 226 ISVSPQNGMTEKLF 239
>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 36.6 bits (83), Expect = 0.64
Identities = 106/528 (20%), Positives = 195/528 (36%), Gaps = 85/528 (16%)
Query: 638 VVALPVVSSDHSPLILD----PVPKH-------RSGRQFKYEAFWNEHKDCSKVVED--- 683
V L +SSDH+PL+ D P+ K R +++A+ +H D S ++
Sbjct: 204 VQTLHELSSDHTPLLADLHAMPINKPPRSCLLARGADIERFKAYLTQHIDLSVGIQGTDD 263
Query: 684 ---------------AWNTTPQGENDWETLQN----KVKSCQIGLTKWQKVTFSRA-DKE 723
A + P + + E+ + + + I L + + ++R D
Sbjct: 264 IDNAIDSFMDILKRAAIRSAPSHQQNVESSRQLQLPPIVASLIRLKRKVRREYARTGDAR 323
Query: 724 IEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHF 783
I+++ +RL+ N H ++ + +Q + L T ++ W +
Sbjct: 324 IQQIHSRLA---NRLHKVLNRRKQSQIDNLLENL--------DTDGSTNFSLWRITKRYK 372
Query: 784 FHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPK 843
AT +++ G W E +H + FK+ L V +
Sbjct: 373 TQATPNSA--------IRNPAGGWCRTSREKTEVFANHLEQRFKALAFAPESHSLM-VAE 423
Query: 844 LIPTDLNNKL-METVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHS 902
+ T L + VT EE+K + + KAPG D L+ + + + + +S
Sbjct: 424 SLQTPFQMALPADPVTLEEVKELVSKLKPKKAPGEDLLDNRTIRLLPDQALLYLVLIFNS 483
Query: 903 FFNTSTLSPCINETLVALVPKIPSLEM-ANQYRPISCCNYLYKIISKVIVARL--KGELN 959
+ ++ K + + YRP S L K++ ++I+ R+ E+
Sbjct: 484 ILRVGYFPKARPTASIIMILKPGKQPLDVDSYRPTSLLPSLGKMLERLILNRILTSEEVT 543
Query: 960 DIITPNQSAFIKDRLIQDNILIAHEIFH-ALQHRGREHKDHL-AIKLDMSKAYDRVEWE- 1016
I Q F RL H + + AL+ E K++ + LD+ +A+DRV W
Sbjct: 544 RAIPKFQFGF---RLQHGTPEQLHRVVNFALE--ALEKKEYAGSCFLDIQQAFDRV-WHP 597
Query: 1017 ---FLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLF 1073
+ K+LL+ L+ + G + +G S + G+ QG L P L+
Sbjct: 598 GLLYKAKSLLS----PQLFQLIKSFWEGRKFSVTADGCRSSVKFIEAGVPQGSVLGPTLY 653
Query: 1074 VLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKAT 1121
S NQ + G+ + +ADD V K+T
Sbjct: 654 -------SIFTADMPNQNAVTGLAEGE----VLIATYADDIAVLTKST 690
>RPC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1479
Score = 35.8 bits (81), Expect = 1.1
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1037 NLVRGVSY-KYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQG 1095
NL G+S +Y ++ Y +RK + +R D + YL +++V+ H+I++ ++ G I+G
Sbjct: 168 NLREGLSLTEYIISCYGARKGVVDTAVRTAD--AGYLTRRLVEVVQHIIVRRRDCGTIRG 225
Query: 1096 IKLSPSTPCITHLF 1109
I +SP LF
Sbjct: 226 ISVSPQNGMTEKLF 239
>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 35.0 bits (79), Expect = 1.9
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 18/238 (7%)
Query: 854 METVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCI 913
+ VT EE+K + + KAPG D L+ + + + + +S +
Sbjct: 435 LSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAW 494
Query: 914 NETLVALVPKIPSLEM-ANQYRPISCCNYLYKIISKVIVARLK--GELNDIITPNQSAFI 970
+ ++ K + YRP S L KI+ ++I+ RL ++ I Q F
Sbjct: 495 KSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGF- 553
Query: 971 KDRLIQDNILIAHEIFH-ALQHRGREHKDH-LAIKLDMSKAYDRVEWE--FLEKALLAYG 1026
RL H + + AL+ E+K++ + LD+ +A+DRV W L KA +
Sbjct: 554 --RLQHGTPEQLHRVVNFALE--AMENKEYAVGAFLDIQQAFDRV-WHPGLLYKAKRLF- 607
Query: 1027 FCGPWVSLVM-NLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLF-VLVMDVLSH 1082
P + LV+ + + ++ V+GY S G+ QG L P L+ V D+ +H
Sbjct: 608 --PPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTH 663
>RPC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1384
Score = 35.0 bits (79), Expect = 1.9
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 1037 NLVRGVSY-KYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQG 1095
NL G+S +Y ++ Y +RK + +RQ D + YL +++V+ H++++ + G I+G
Sbjct: 172 NLREGLSLTEYIISCYGARKGVVDTAVRQSD--AGYLTRRLVEVVQHIVVRRTDCGTIRG 229
Query: 1096 IKLSP 1100
I +SP
Sbjct: 230 ISVSP 234
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.331 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,205,289
Number of Sequences: 164201
Number of extensions: 9668690
Number of successful extensions: 21905
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 21835
Number of HSP's gapped (non-prelim): 61
length of query: 1797
length of database: 59,974,054
effective HSP length: 125
effective length of query: 1672
effective length of database: 39,448,929
effective search space: 65958609288
effective search space used: 65958609288
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0304.11