BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0303.2
         (291 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SYL_SYNEL (Q8DH61) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...    33  1.1
DMD_MOUSE (P11531) Dystrophin                                          31  4.1
DMD_HUMAN (P11532) Dystrophin                                          31  4.1
DMD_CHICK (P11533) Dystrophin                                          31  4.1
DMD_CANFA (O97592) Dystrophin                                          31  4.1
YIEO_HAEIN (P44903) Hypothetical transport protein HI0852              30  7.0

>SYL_SYNEL (Q8DH61) Leucyl-tRNA synthetase (EC 6.1.1.4)
           (Leucine--tRNA ligase) (LeuRS)
          Length = 857

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 82  LTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIWHSFAPSNVKGFA 137
           LT+G+     +     G Y + S    L +PT PDT EAL  ++   + S   G A
Sbjct: 570 LTQGMVQGRTYKNPRTGKYVIPSRIADLNQPTDPDTGEALEVVYEKMSKSKYNGVA 625


>DMD_MOUSE (P11531) Dystrophin
          Length = 3678

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 27/113 (23%), Positives = 42/113 (36%), Gaps = 20/113 (17%)

Query: 101  SVNSAYHFLQEPTLPDTDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSL 160
            SV S + F      P+ + AL   W    P ++    W  +L R A+ E        T+ 
Sbjct: 3255 SVRSCFQFANNK--PEIEAALFLDWMRLEPQSM---VWLPVLHRVAAAE--------TAK 3301

Query: 161  ADAQCALCNDYVETGFHLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHF 213
              A+C +C +    GF       F+  + Q C       F     A+ H  H+
Sbjct: 3302 HQAKCNICKECPIIGFRYRSLKHFNYDICQSC-------FFSGRVAKGHKMHY 3347


>DMD_HUMAN (P11532) Dystrophin
          Length = 3685

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 27/113 (23%), Positives = 42/113 (36%), Gaps = 20/113 (17%)

Query: 101  SVNSAYHFLQEPTLPDTDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSL 160
            SV S + F      P+ + AL   W    P ++    W  +L R A+ E        T+ 
Sbjct: 3262 SVRSCFQFANNK--PEIEAALFLDWMRLEPQSM---VWLPVLHRVAAAE--------TAK 3308

Query: 161  ADAQCALCNDYVETGFHLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHF 213
              A+C +C +    GF       F+  + Q C       F     A+ H  H+
Sbjct: 3309 HQAKCNICKECPIIGFRYRSLKHFNYDICQSC-------FFSGRVAKGHKMHY 3354


>DMD_CHICK (P11533) Dystrophin
          Length = 3660

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 27/113 (23%), Positives = 42/113 (36%), Gaps = 20/113 (17%)

Query: 101  SVNSAYHFLQEPTLPDTDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSL 160
            SV S + F      P+ + AL   W    P ++    W  +L R A+ E        T+ 
Sbjct: 3259 SVRSCFQFANNK--PEIEAALFLDWMRLEPQSM---VWLPVLHRVAAAE--------TAK 3305

Query: 161  ADAQCALCNDYVETGFHLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHF 213
              A+C +C +    GF       F+  + Q C       F     A+ H  H+
Sbjct: 3306 HQAKCNICKECPIIGFRYRSLKHFNYDICQSC-------FFSGRVAKGHKMHY 3351


>DMD_CANFA (O97592) Dystrophin
          Length = 3680

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 27/113 (23%), Positives = 42/113 (36%), Gaps = 20/113 (17%)

Query: 101  SVNSAYHFLQEPTLPDTDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSL 160
            SV S + F      P+ + AL   W    P ++    W  +L R A+ E        T+ 
Sbjct: 3257 SVRSCFQFANNK--PEIEAALFLDWMRLEPQSM---VWLPVLHRVAAAE--------TAK 3303

Query: 161  ADAQCALCNDYVETGFHLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHF 213
              A+C +C +    GF       F+  + Q C       F     A+ H  H+
Sbjct: 3304 HQAKCNICKECPIIGFRYRSLKHFNYDICQSC-------FFSGRVAKGHKMHY 3349


>YIEO_HAEIN (P44903) Hypothetical transport protein HI0852
          Length = 463

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 19/62 (30%)

Query: 44  LGSWE--HGRWHWKFLWRRPL-----------------VGRELEWEKGLLDALGTVQLTK 84
           LG W   H  WHW FL   P+                    +L+W   LL ALG V +T 
Sbjct: 153 LGGWLVIHASWHWIFLINIPIGALGILASGSVMNNIKGKAEKLDWTGFLLFALGLVGITL 212

Query: 85  GV 86
           G+
Sbjct: 213 GL 214


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.138    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,910,072
Number of Sequences: 164201
Number of extensions: 1569941
Number of successful extensions: 4136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4134
Number of HSP's gapped (non-prelim): 6
length of query: 291
length of database: 59,974,054
effective HSP length: 109
effective length of query: 182
effective length of database: 42,076,145
effective search space: 7657858390
effective search space used: 7657858390
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)