BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0301a.4
         (147 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AMPM_MANSE (Q11001) Membrane alanyl aminopeptidase precursor (EC...    31  1.1
Y641_VIBCH (Q9KU82) Hypothetical UPF0090 protein VC0641                30  1.9
YRF6_YEAST (P53819) Y'helicase protein 1 copy 6                        29  3.2
YRF4_YEAST (O13559) Y'helicase protein 1 copy 4                        29  3.2
YRF3_YEAST (P53345) Y'helicase protein 1 copies 3/7                    29  3.2
YRF2_YEAST (P40105) Y'helicase protein 1 copy 2                        29  3.2
YRF1_YEAST (P24088) Y'helicase protein 1 copies 1/5/8                  29  3.2
YJW5_YEAST (P40889) Hypothetical 197.6 kDa protein in FSP2 5'region    29  3.2
YIR7_YEAST (P40434) Hypothetical 197.5 kDa protein in SDL1 5'region    29  3.2
YCFS_ECOLI (P75954) Hypothetical protein ycfS precursor                29  3.2
BGAL_ARTSB (Q59140) Beta-galactosidase (EC 3.2.1.23) (Lactase)         29  3.2
CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 ...    29  4.2
RUVC_XANCP (Q8P6E4) Crossover junction endodeoxyribonuclease ruv...    28  9.3
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei...    28  9.3
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei...    28  9.3
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei...    28  9.3
IRGB_VIBCH (P25543) Iron-regulated virulence regulatory protein ...    28  9.3
DP3B_STAAM (P50029) DNA polymerase III, beta chain (EC 2.7.7.7)        28  9.3
CVRA_PSESM (Q87VB6) Cell volume regulation protein A homolog           28  9.3

>AMPM_MANSE (Q11001) Membrane alanyl aminopeptidase precursor (EC
           3.4.11.-) (Aminopeptidase N-like protein) (CryIA(C)
           receptor) (Fragment)
          Length = 990

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 19/66 (28%), Positives = 28/66 (41%), Gaps = 8/66 (12%)

Query: 50  VHPVFHASLLKEAVGNNSVELQL--------LDHLTGEEVASVHPFSVITSRFTTRQEST 101
           V P  H+S L  A+ +N V            +D +T    +   P + ITSR  T  + T
Sbjct: 823 VRPQDHSSALSSAITSNDVNTMRAFDWLTKNVDQITRTLGSITSPLNTITSRLLTEAQMT 882

Query: 102 LPQVWI 107
             Q W+
Sbjct: 883 QVQTWL 888


>Y641_VIBCH (Q9KU82) Hypothetical UPF0090 protein VC0641
          Length = 151

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 22/92 (23%), Positives = 39/92 (41%), Gaps = 13/92 (14%)

Query: 3   IKLMALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHAS----- 57
           +++    EN +   DC +++        +   I +V Y L++   G   P+F A+     
Sbjct: 37  LRIFIDHENGITVEDCAEVSRQVSAVLDVEDPI-SVVYNLEVSSPGLERPLFKAAHYEQF 95

Query: 58  -------LLKEAVGNNSVELQLLDHLTGEEVA 82
                  +LK AVGN      ++  + GE VA
Sbjct: 96  IGHEVSIVLKMAVGNRRKWKGVIQSIDGETVA 127


>YRF6_YEAST (P53819) Y'helicase protein 1 copy 6
          Length = 1859

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 47  GGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQ--ESTLPQ 104
           G R     + S   E + N+SV+       TG  +  V  FS+ +   TT    +    +
Sbjct: 728 GSRFETDLYESATSELMANHSVQ-------TGRNIYGVDSFSLTSVSGTTATLLQERASE 780

Query: 105 VWIQWQGKPAD 115
            WIQW G  +D
Sbjct: 781 RWIQWLGLESD 791


>YRF4_YEAST (O13559) Y'helicase protein 1 copy 4
          Length = 1382

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 47  GGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQ--ESTLPQ 104
           G R     + S   E + N+SV+       TG  +  V  FS+ +   TT    +    +
Sbjct: 250 GSRFETDLYESATSELMANHSVQ-------TGRNIYGVDSFSLTSVSGTTATLLQERASE 302

Query: 105 VWIQWQGKPAD 115
            WIQW G  +D
Sbjct: 303 RWIQWLGLESD 313


>YRF3_YEAST (P53345) Y'helicase protein 1 copies 3/7
          Length = 1859

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 47  GGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQ--ESTLPQ 104
           G R     + S   E + N+SV+       TG  +  V  FS+ +   TT    +    +
Sbjct: 728 GSRFETDLYESATSELMANHSVQ-------TGRNIYGVDSFSLTSVSGTTATLLQERASE 780

Query: 105 VWIQWQGKPAD 115
            WIQW G  +D
Sbjct: 781 RWIQWLGLESD 791


>YRF2_YEAST (P40105) Y'helicase protein 1 copy 2
          Length = 1681

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 47  GGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQ--ESTLPQ 104
           G R     + S   E + N+SV+       TG  +  V  FS+ +   TT    +    +
Sbjct: 550 GSRFETDLYESATSELMANHSVQ-------TGRNIYGVDSFSLTSVSGTTATLLQERASE 602

Query: 105 VWIQWQGKPAD 115
            WIQW G  +D
Sbjct: 603 RWIQWLGLESD 613


>YRF1_YEAST (P24088) Y'helicase protein 1 copies 1/5/8
          Length = 1796

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 47  GGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQ--ESTLPQ 104
           G R     + S   E + N+SV+       TG  +  V  FS+ +   TT    +    +
Sbjct: 664 GSRFETDLYESATSELMANHSVQ-------TGRNIYGVDSFSLTSVSGTTATLLQERASE 716

Query: 105 VWIQWQGKPAD 115
            WIQW G  +D
Sbjct: 717 RWIQWLGLESD 727


>YJW5_YEAST (P40889) Hypothetical 197.6 kDa protein in FSP2 5'region
          Length = 1758

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 47  GGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQ--ESTLPQ 104
           G R     + S   E + N+SV+       TG  +  V  FS+ +   TT    +    +
Sbjct: 535 GSRFETDLYESATSELMANHSVQ-------TGRNIYGVDSFSLTSVSGTTATLLQERASE 587

Query: 105 VWIQWQGKPAD 115
            WIQW G  +D
Sbjct: 588 RWIQWLGLESD 598


>YIR7_YEAST (P40434) Hypothetical 197.5 kDa protein in SDL1 5'region
          Length = 1758

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 47  GGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQ--ESTLPQ 104
           G R     + S   E + N+SV+       TG  +  V  FS+ +   TT    +    +
Sbjct: 535 GSRFETDLYESATSELMANHSVQ-------TGRNIYGVDSFSLTSVSGTTATLLQERASE 587

Query: 105 VWIQWQGKPAD 115
            WIQW G  +D
Sbjct: 588 RWIQWLGLESD 598


>YCFS_ECOLI (P75954) Hypothetical protein ycfS precursor
          Length = 320

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 44  LPEGGRVHPVFHASLL----KEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQE 99
           +P  G V  +   +LL    +E +  N  EL+L  +  G+   +V+P  +          
Sbjct: 81  VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGI-----GQLGG 135

Query: 100 STLPQVWIQWQGKPADEPTWKDTLNIRSQFPVFNLEDKVDLSAG 143
            TL    +         PTW  T NIR+++    +E    + AG
Sbjct: 136 DTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAG 179


>BGAL_ARTSB (Q59140) Beta-galactosidase (EC 3.2.1.23) (Lactase)
          Length = 1015

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 107 IQWQGKPADEPTWKDTL 123
           ++W G P+D+P W+D L
Sbjct: 393 LKWVGNPSDDPAWRDAL 409


>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1
           (CHD-1)
          Length = 1711

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 90  ITSRFTTRQESTLPQVWIQWQGKPADEPTWKDTLNIRSQF 129
           I +    +  + LP  + +WQG P  E +W+D   I  +F
Sbjct: 392 IIAHSNQKSAAGLPDYYCKWQGLPYSECSWEDGALISKKF 431


>RUVC_XANCP (Q8P6E4) Crossover junction endodeoxyribonuclease ruvC
          (EC 3.1.22.4) (Holliday junction nuclease ruvC)
          (Holliday juction resolvase ruvC)
          Length = 174

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 16/48 (33%), Positives = 24/48 (49%)

Query: 42 LQLPEGGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSV 89
          + + E GR   VFHA L+    G+ +  L+ L H  GE + +  P  V
Sbjct: 19 IDVDESGRSRHVFHAPLVLLGEGDFAQRLKRLLHGLGELIETYQPQEV 66


>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
            type 3
          Length = 1333

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 2/57 (3%)

Query: 20   QLTAPYYGPYPIIQRIGAVAYRLQLPEGGR--VHPVFHASLLKEAVGNNSVELQLLD 74
            +L   + GP+ ++Q+ G   Y L LP+  +      FH S L++   N+ +    +D
Sbjct: 1213 KLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATID 1269


>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
            type 2
          Length = 1333

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 2/57 (3%)

Query: 20   QLTAPYYGPYPIIQRIGAVAYRLQLPEGGR--VHPVFHASLLKEAVGNNSVELQLLD 74
            +L   + GP+ ++Q+ G   Y L LP+  +      FH S L++   N+ +    +D
Sbjct: 1213 KLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATID 1269


>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
            type 1
          Length = 1333

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 2/57 (3%)

Query: 20   QLTAPYYGPYPIIQRIGAVAYRLQLPEGGR--VHPVFHASLLKEAVGNNSVELQLLD 74
            +L   + GP+ ++Q+ G   Y L LP+  +      FH S L++   N+ +    +D
Sbjct: 1213 KLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATID 1269


>IRGB_VIBCH (P25543) Iron-regulated virulence regulatory protein
           irgB
          Length = 298

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 16/46 (34%), Positives = 23/46 (49%)

Query: 41  RLQLPEGGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASVHP 86
           RL L + G V  V+   LL+ A  +     +L + +TGE    VHP
Sbjct: 55  RLTLTKAGEVFAVYSEQLLELANKSQEALQELNNQVTGELTLVVHP 100


>DP3B_STAAM (P50029) DNA polymerase III, beta chain (EC 2.7.7.7)
          Length = 377

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 27  GPYPIIQRIGAVAY--RLQLPEGGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEEVASV 84
           G YP   R+    Y  +L +  G   H +  ASLL    GNN ++L   D +   E++S 
Sbjct: 247 GHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVV--ELSST 304

Query: 85  HP 86
            P
Sbjct: 305 SP 306


>CVRA_PSESM (Q87VB6) Cell volume regulation protein A homolog
          Length = 580

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 15/46 (32%), Positives = 24/46 (51%)

Query: 35  IGAVAYRLQLPEGGRVHPVFHASLLKEAVGNNSVELQLLDHLTGEE 80
           IGA    L++PEG R+  +F    L    G+ ++E+  L  + G E
Sbjct: 427 IGAALRELKMPEGTRIAALFRGQQLLHPSGSTTLEVGDLLCVIGHE 472


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,918,034
Number of Sequences: 164201
Number of extensions: 704033
Number of successful extensions: 1512
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 19
length of query: 147
length of database: 59,974,054
effective HSP length: 100
effective length of query: 47
effective length of database: 43,553,954
effective search space: 2047035838
effective search space used: 2047035838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)