BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0299.5
         (547 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ICA1_HUMAN (P05362) Intercellular adhesion molecule-1 precursor ...    33  2.5
SFSA_PROMA (Q7VDS4) Sugar fermentation stimulation protein homolog     32  3.3
G6PD_DROSI (Q24625) Glucose-6-phosphate 1-dehydrogenase (EC 1.1....    32  3.3
TRUD_HELHP (P59892) tRNA pseudouridine synthase D (EC 4.2.1.70) ...    32  4.3
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...    32  4.3
G6PD_DROME (P12646) Glucose-6-phosphate 1-dehydrogenase (EC 1.1....    31  9.5

>ICA1_HUMAN (P05362) Intercellular adhesion molecule-1 precursor
           (ICAM-1) (Major group rhinovirus receptor) (CD54
           antigen)
          Length = 532

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 3/54 (5%)

Query: 366 DWAWCAPSNDLLLCHPWSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQGRWV 419
           +W W   S    +C  W  P P+ +KC  DG+F   +     V V RD +G ++
Sbjct: 406 NWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFPLPIGE--SVTVTRDLEGTYL 456


>SFSA_PROMA (Q7VDS4) Sugar fermentation stimulation protein homolog
          Length = 251

 Score = 32.3 bits (72), Expect = 3.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 223 LAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCAR 276
           L H+P   RKL+W W+       + F+W  ++ A+P N+L     LA +A C +
Sbjct: 58  LRHSPSPSRKLSWSWEQAQVPSGQSFSWVGVNTALP-NKL---VRLAIEAGCLK 107


>G6PD_DROSI (Q24625) Glucose-6-phosphate 1-dehydrogenase (EC
           1.1.1.49) (G6PD) (Zwischenferment) (Fragment)
          Length = 153

 Score = 32.3 bits (72), Expect = 3.3
 Identities = 17/60 (28%), Positives = 27/60 (44%)

Query: 186 FLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKI 245
           ++ VQP      E+ W   D  SGRY  R ++E +N          K N ++ L +P  +
Sbjct: 36  YMKVQPHEQNKYEEFWALNDYVSGRYDGRTSFEVLNQRLEMMENKNKANRIFYLALPPSV 95


>TRUD_HELHP (P59892) tRNA pseudouridine synthase D (EC 4.2.1.70)
           (Pseudouridylate synthase) (Uracil hydrolyase)
          Length = 385

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 178 LPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAY 217
           L + +++QFL  Q +    R  AW+W +   GRY  ++A+
Sbjct: 320 LAYDIEEQFLDSQIKANGTRRYAWVWAENIEGRYIPQEAH 359


>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 61  F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMIDQ 120
           F   ++ K   ++I +   L  R+L  +Y   +S+ +       S  W+ I+  R+++ +
Sbjct: 65  FNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSR 124

Query: 121 RFEFRIGKG-DTSVWYQDW 138
                IG G  T VW   W
Sbjct: 125 GLLRTIGDGIHTKVWLDRW 143


>G6PD_DROME (P12646) Glucose-6-phosphate 1-dehydrogenase (EC
           1.1.1.49) (G6PD) (Zwischenferment)
          Length = 524

 Score = 30.8 bits (68), Expect = 9.5
 Identities = 16/60 (26%), Positives = 26/60 (42%)

Query: 186 FLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKI 245
           ++ VQP      E+ W   +  SGRY  R  +E +N          K N ++ L +P  +
Sbjct: 91  YMKVQPHEQKKYEEFWALNEYVSGRYDGRTGFELLNQQLEIMENKNKANRIFYLALPPSV 150


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.332    0.143    0.506 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,730,821
Number of Sequences: 164201
Number of extensions: 2851961
Number of successful extensions: 6623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6619
Number of HSP's gapped (non-prelim): 6
length of query: 547
length of database: 59,974,054
effective HSP length: 115
effective length of query: 432
effective length of database: 41,090,939
effective search space: 17751285648
effective search space used: 17751285648
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 68 (30.8 bits)