BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0296b.2
         (1291 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog              136  4e-31
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains...   128  9e-29
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ...   128  1e-28
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog              122  6e-27
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type...   101  2e-20
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type...    82  9e-15
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type...    66  5e-10
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type...    60  5e-08
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III     59  1e-07
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250...    59  1e-07
PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type...    50  4e-05
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type...    42  0.014
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem...    39  0.092
YKFC_ECOLI (Q47688) Hypothetical protein ykfC                          36  0.59
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro...    35  1.0
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem...    35  1.0
RTL_CHLRE (P11660) Reverse transcriptase-like protein                  34  2.3
AI1M_YEAST (P03875) COX1/OXI3 intron 1 protein                         34  2.9
ANS1_MOUSE (P59672) Ankyrin repeat and SAM domain protein 1            33  3.8
DYHC_YEAST (P36022) Dynein heavy chain, cytosolic (DYHC)               33  5.0

>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score =  136 bits (342), Expect = 4e-31
 Identities = 110/424 (25%), Positives = 196/424 (45%), Gaps = 19/424 (4%)

Query: 298 NRRNSYGTRKLERTGSDWGTLTNTQAVIIRKRNSVHRLKLSDGSWCSDTSKLQEEALGYF 357
           N+  S+   K+ +       LT  + V    ++ +  ++  +    +D S++Q+    Y+
Sbjct: 359 NKSKSWFFEKINKIDKPLANLTRKKRV----KSLISSIRNGNDEITTDPSEIQKILNEYY 414

Query: 358 QALFAG---NQEASQTPFPGDNVPKLKEVVRFLLVQPVSKEEVRQALMSMKSFTAPGPDG 414
           + L++    N +         ++P+L +    +L +P+S  E+   + ++    +PGPDG
Sbjct: 415 KKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDG 474

Query: 415 FQPFFFKQYWEQVGDTVWKVVSEAFESGKVDERLLEILVVLIPKVNH-PTSIKEFRPISL 473
           F   F++ + E++   +  +     + G +     E  + LIPK    PT  + +RPISL
Sbjct: 475 FTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISL 534

Query: 474 CNVTYKLITKLLVNRIRPFLNDIVGPMQNSFLPGRGTMDNAFLA*EIIHQMHRSMARKGN 533
            N+  K++ K+L NRI+  +  I+   Q  F+PG     N   +  +I  +++ +  K +
Sbjct: 535 MNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINK-LKNKDH 593

Query: 534 LAFKIDLEKAYDSISWSFLRETLELYEFPLVIIDLIMCYVSSSQISLLWNGAPLPSFKPG 593
           +   ID EKA+D+I   F+  TL+        + LI    S    +++ NG  L SF   
Sbjct: 594 MILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLR 653

Query: 594 RGLRQGDPKSPYFFVLCMERLSIHIQNLVEPGRWKPLHRTAGGTGISHLFFAGDVLLFCK 653
            G RQG P SP  F + ME L+I I+   E    K +H   G   I    FA D++++ +
Sbjct: 654 SGTRQGCPLSPLLFNIVMEVLAIAIR---EEKAIKGIH--IGSEEIKLSLFADDMIVYLE 708

Query: 654 ASVAQVTVLVDALQFLCEGSVLRINVQKSKAITSIGVAPEVRTEIGLRALIPF--VNDLG 711
            +    T L++ ++     S  +IN  KS A          + E  ++  IPF  V    
Sbjct: 709 NTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFI---YTNNNQAEKTVKDSIPFTVVPKKM 765

Query: 712 KYLG 715
           KYLG
Sbjct: 766 KYLG 769


>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1300

 Score =  128 bits (322), Expect = 9e-29
 Identities = 108/427 (25%), Positives = 188/427 (43%), Gaps = 19/427 (4%)

Query: 298 NRRNSYGTRKLERTGSDWGTLTNTQAVIIRKRNSVHRLKLSDGSWCSDTSKLQEEALGYF 357
           N+  S+   K+ +       LT       R +  +++++   G   +D  ++Q     ++
Sbjct: 386 NQTRSWFFEKINKIDKPLARLTKGH----RDKILINKIRNEKGDITTDPEEIQNTIRSFY 441

Query: 358 QALFAG---NQEASQTPFPGDNVPKLKEVVRFLLVQPVSKEEVRQALMSMKSFTAPGPDG 414
           + L++    N +          VPKL +     L  P+S +E+   + S+ +  +PGPDG
Sbjct: 442 KRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDG 501

Query: 415 FQPFFFKQYWEQVGDTVWKVVSEAFESGKVDERLLEILVVLIPKVNH-PTSIKEFRPISL 473
           F   F++ + E +   + K+  +    G +     E  + LIPK    PT I+ FRPISL
Sbjct: 502 FSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISL 561

Query: 474 CNVTYKLITKLLVNRIRPFLNDIVGPMQNSFLPGRGTMDNAFLA*EIIHQMHRSMARKGN 533
            N+  K++ K+L NRI+  +  I+ P Q  F+PG     N   +  +IH +++ +  K +
Sbjct: 562 MNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINK-LKDKNH 620

Query: 534 LAFKIDLEKAYDSISWSFLRETLELYEFPLVIIDLIMCYVSSSQISLLWNGAPLPSFKPG 593
           +   +D EKA+D I   F+ + LE        +++I    S    ++  NG  L +    
Sbjct: 621 MIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLK 680

Query: 594 RGLRQGDPKSPYFFVLCMERLSIHIQNLVEPGRWKPLHRTAGGTGISHLFFAGDVLLFCK 653
            G RQG P SPY F + +E L+  I+   E    +      G   +     A D++++  
Sbjct: 681 SGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQ-----IGKEEVKISLLADDMIVYIS 735

Query: 654 ASVAQVTVLVDALQFLCEGSVLRINVQKSKAITSIGVAPEVRTEIGLRALIPF--VNDLG 711
                   L++ +    E    +IN  KS A          + E  +R   PF  V +  
Sbjct: 736 DPKNSTRELLNLINSFGEVVGYKINSNKSMAFL---YTKNKQAEKEIRETTPFSIVTNNI 792

Query: 712 KYLGFPL 718
           KYLG  L
Sbjct: 793 KYLGVTL 799


>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
           (ORF 2)
          Length = 1308

 Score =  128 bits (321), Expect = 1e-28
 Identities = 83/288 (28%), Positives = 149/288 (50%), Gaps = 9/288 (3%)

Query: 329 RNSVHRLKLSDGSWCSDTSKLQEEALGYFQALFAGNQ---EASQTPFPGDNVPKLKEVVR 385
           R  +  L   DG+   D   +++ A  ++Q LF+ +    +A +  +  D +P + E  +
Sbjct: 385 RKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDACEELW--DGLPVVSERRK 442

Query: 386 FLLVQPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGKVD 445
             L  P++ +E+ QAL  M    +PG DG    FF+ +W+ +G    +V++EAF+ G++ 
Sbjct: 443 ERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELP 502

Query: 446 ERLLEILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPMQNSFL 505
                 ++ L+PK      IK +RP+SL +  YK++ K +  R++  L +++ P Q+  +
Sbjct: 503 LSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTV 562

Query: 506 PGRGTMDNAFLA*EIIHQMHRSMARKGNLAF-KIDLEKAYDSISWSFLRETLELYEFPLV 564
           PGR   DN FL  +++H   R+     +LAF  +D EKA+D +   +L  TL+ Y F   
Sbjct: 563 PGRTIFDNVFLIRDLLHFARRTGL---SLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQ 619

Query: 565 IIDLIMCYVSSSQISLLWNGAPLPSFKPGRGLRQGDPKSPYFFVLCME 612
            +  +    +S++  +  N +       GRG+RQG P S   + L +E
Sbjct: 620 FVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIE 667


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score =  122 bits (306), Expect = 6e-27
 Identities = 100/398 (25%), Positives = 182/398 (45%), Gaps = 15/398 (3%)

Query: 327 RKRNSVHRLKLSDGSWCSDTSKLQEEALGYFQALFAG---NQEASQTPFPGDNVPKLKEV 383
           R++N +  +K   G   +D +++Q     Y++ L+A    N E          +P+L + 
Sbjct: 384 REKNQIDTIKNDRGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQE 443

Query: 384 VRFLLVQPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGK 443
               L +P++  E+   + S+ +  +PGP+GF   F+++Y E++   + K+     + G 
Sbjct: 444 EVESLNRPITSSEIEAIINSLPNKKSPGPEGFTAEFYQRYKEELVPFLLKLFQSIEKEGI 503

Query: 444 VDERLLEILVVLIPKVNHPTSIKE-FRPISLCNVTYKLITKLLVNRIRPFLNDIVGPMQN 502
           +     E  ++LIPK    T+ KE FRPISL N+  K++ K+L N+I+  +  ++   Q 
Sbjct: 504 LPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQV 563

Query: 503 SFLPGRGTMDNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETLELYEFP 562
            F+P      N   +  II  ++R+     ++   ID EKA+D I   F+ + L      
Sbjct: 564 GFIPAMQGWFNIRKSINIIQHINRT-KDTNHMIISIDAEKAFDKIQQPFMLKPLNKLGID 622

Query: 563 LVIIDLIMCYVSSSQISLLWNGAPLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQNLV 622
              + +I         +++ NG  L +     G RQG P SP    + +E L+  I+   
Sbjct: 623 GTYLKIIRAIYDKPTANIILNGQKLEAPPLKTGTRQGCPLSPLLPNIVLEVLARAIRQEK 682

Query: 623 EPGRWKPLHRTAGGTGISHLFFAGDVLLFCKASVAQVTVLVDALQFLCEGSVLRINVQKS 682
           E    +      G   +    FA D++++ +  +     L+  +    + S  +INVQKS
Sbjct: 683 EIKGIQ-----LGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKS 737

Query: 683 KAITSIGVAPEVRTEIGLRALIPF--VNDLGKYLGFPL 718
           +A          +TE  + + +PF   +   KYLG  L
Sbjct: 738 QAFL---YTNNRQTESQIMSELPFTIASKRIKYLGIQL 772


>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
           retrotransposable element R2DM [Contains: Protease (EC
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Endonuclease]
          Length = 1057

 Score =  101 bits (251), Expect = 2e-20
 Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 20/295 (6%)

Query: 392 VSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGKVDERLLEI 451
           ++++++R + +S+ S  +PGPDG  P   K   E     + ++++     G +   +   
Sbjct: 344 ITEQDLRASRVSLSS--SPGPDGITP---KSAREVPSGIMLRIMNLILWCGNLPHSIRLA 398

Query: 452 LVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPMQNSFLPGRGTM 511
             V IPK       ++FRPIS+ +V  + +  +L  R+   +N    P Q  FLP  G  
Sbjct: 399 RTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSIN--WDPRQRGFLPTDGCA 456

Query: 512 DNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETLELYEFPLVIIDLIMC 571
           DNA +   ++   H+    +      +D+ KA+DS+S + + +TL  Y  P   +D +  
Sbjct: 457 DNATIVDLVLRHSHKHF--RSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQN 514

Query: 572 YVSSSQISLLWNGAPLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQNLVEPGRWKPLH 631
                  SL  +G     F P RG++QGDP SP  F L M+RL   + +         + 
Sbjct: 515 TYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPS--------EIG 566

Query: 632 RTAGGTGISHLFFAGDVLLFCKASVAQVTVLVDALQFLCEGSVLRINVQKSKAIT 686
              G    +   FA D++LF +  +    +L   L FL   S++ + +   K  T
Sbjct: 567 AKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFL---SIVGLKLNADKCFT 618


>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1025

 Score = 82.0 bits (201), Expect = 9e-15
 Identities = 70/266 (26%), Positives = 120/266 (44%), Gaps = 18/266 (6%)

Query: 388 LVQPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGKVDER 447
           L +P+S +E+++     +  TA GPDG         W  + + +  + +     G+   R
Sbjct: 315 LWRPISNDEIKEVEACKR--TAAGPDGMTT----TAWNSIDECIKSLFNMIMYHGQCPRR 368

Query: 448 LLEILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPMQNSFLPG 507
            L+   VLIPK         FRP+S+ +V  +   ++L NRI    + ++   Q +F+  
Sbjct: 369 YLDSRTVLIPKEPGTMDPACFRPLSIASVALRHFHRILANRIGE--HGLLDTRQRAFIVA 426

Query: 508 RGTMDNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETLELYEFPLVIID 567
            G  +N  L   +I +    M  KG     +D++KA+DS+    + + L   + PL + +
Sbjct: 427 DGVAENTSLLSAMIKEAR--MKIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRN 484

Query: 568 LIMCYVSSSQISLLWNGAPLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQNLVEPGRW 627
            IM    +S+  L          +P RG+RQGDP SP  F   M+ +   ++ L E   +
Sbjct: 485 YIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAV---LRRLPENTGF 541

Query: 628 KPLHRTAGGTGISHLFFAGDVLLFCK 653
                  G   I  L FA D++L  +
Sbjct: 542 -----LMGAEKIGALVFADDLVLLAE 562


>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 711

 Score = 66.2 bits (160), Expect = 5e-10
 Identities = 88/349 (25%), Positives = 143/349 (40%), Gaps = 43/349 (12%)

Query: 390 QPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGKVDERLL 449
           +P+++EE++ A+   K  +APG DG               TV  +         V   LL
Sbjct: 4   RPIAREEIQCAIKGWKP-SAPGSDGL--------------TVQAITRTRLPRNFVQLHLL 48

Query: 450 E---------ILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPM 500
                     +   LIPK     +   +RPI++ +   +L+ ++L  R+   +   + P 
Sbjct: 49  RGHVPTPWTAMRTTLIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE--LHPA 106

Query: 501 QNSFLPGRGTMDNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETLELYE 560
           Q  +    GT+ N+ L    I    R   RK      +D+ KA+D++S S +   L+   
Sbjct: 107 QKGYARIDGTLVNSLLLDTYISS--RREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLG 164

Query: 561 FPLVIIDLIMCYVSSSQISL-LWNGAPLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQ 619
                 + I   +S S  ++ +  G+        RG++QGDP SP+ F   ++ L   +Q
Sbjct: 165 IDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQ 224

Query: 620 NLVEPGRWKPLHRTAGGTGISHLFFAGDVLLFCKASVAQVTVLVDALQFL-CEGSVLRIN 678
           +   PG    +  T G   I  L FA D+LL     V   T L     F    G  L   
Sbjct: 225 S--TPG----IGGTIGEEKIPVLAFADDLLLLEDNDVLLPTTLATVANFFRLRGMSLNAK 278

Query: 679 VQKSKAITSIGVAPEVRTEIGLR---ALIPFVNDLG--KYLG--FPLQG 720
              S ++ + G     RT+  LR    L+P  + +   +YLG  F L G
Sbjct: 279 KSVSISVAASGGVCIPRTKPFLRVDNVLLPVTDRMQTFRYLGHFFGLSG 327


>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 869

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 86/340 (25%), Positives = 146/340 (42%), Gaps = 34/340 (10%)

Query: 388 LVQPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFES-GKVDE 446
           L  PVS  E++ A  S +     GPDG  P    + W  + D   +++   F   G+V  
Sbjct: 155 LWDPVSLIEIKSARASNEK--GAGPDGVTP----RSWNALDDRYKRLLYNIFVFYGRVPS 208

Query: 447 RLLEILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNR-IRPFLNDIVGPMQNSFL 505
            +     V  PK+        FRP+S+C+V  +   K+L  R +  +  D     Q ++L
Sbjct: 209 PIKGSRTVFTPKIEGGPDPGVFRPLSICSVILREFNKILARRFVSCYTYD---ERQTAYL 265

Query: 506 PGRGTMDNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETLELYEFPLVI 565
           P  G   N  +   II +  R + ++ ++A  +DL KA++S+  S L + +     P  +
Sbjct: 266 PIDGVCINVSMLTAIIAEAKR-LRKELHIAI-LDLVKAFNSVYHSALIDAITEAGCPPGV 323

Query: 566 IDLIMCYVSSSQISLLWNG-APLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQNLVEP 624
           +D I    ++    + + G   L S     G+ QGDP S   F L  E+    ++ L   
Sbjct: 324 VDYIADMYNNVITEMQFEGKCELASIL--AGVYQGDPLSGPLFTLAYEKA---LRALNNE 378

Query: 625 GRWKPLHRTAGGTGISHLFFAGDVLLFCKASVAQVTVLVDALQFLCEGSVLRINVQKSKA 684
           GR+           ++   ++ D LL    +V  +   +D          LRIN +KSK 
Sbjct: 379 GRF-----DIADVRVNASAYSDDGLLLA-MTVIGLQHNLDKFGETLAKIGLRINSRKSKT 432

Query: 685 ITSIGVAPEVRTEI--GLRALIP-------FVNDLGKYLG 715
           ++ +    E + +I    R L+         ++DL KYLG
Sbjct: 433 VSLVPSGREKKMKIVSNRRLLLKASELKPLTISDLWKYLG 472


>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
          Length = 1222

 Score = 58.5 bits (140), Expect = 1e-07
 Identities = 42/184 (22%), Positives = 83/184 (44%), Gaps = 3/184 (1%)

Query: 437 EAFESGKVDERLLEILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDI 496
           ++F    +  R    +++ IPK  +P+S   +RPISL +   +++ +++ +RIR   + +
Sbjct: 654 QSFSDSAIPNRWKHAVIIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHL 713

Query: 497 VGPMQNSFLPGRGTMDNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETL 556
           + P Q+ FL  R    +   +  + H + ++      L F  D  KA+D +S   L + L
Sbjct: 714 LSPHQHGFLNFRSCPSSLVRSISLYHSILKNEKSLDILFF--DFAKAFDKVSHPILLKKL 771

Query: 557 ELYEFPLVIIDLIMCYVSSSQISLLWNGAPLPSFKP-GRGLRQGDPKSPYFFVLCMERLS 615
            L+    +       ++     S+  N     +  P   G+ QG    P  F+L +  L 
Sbjct: 772 ALFGLDKLTCSWFKEFLHLRTFSVKINKFVSSNAYPISSGVPQGSVSGPLLFILFINDLL 831

Query: 616 IHIQ 619
           I ++
Sbjct: 832 IDLE 835


>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
           (ORF102)
          Length = 122

 Score = 58.5 bits (140), Expect = 1e-07
 Identities = 31/65 (47%), Positives = 36/65 (54%)

Query: 583 NGAPLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQNLVEPGRWKPLHRTAGGTGISHL 642
           NGAP     P RGLRQGDP SPY F+LC E LS   +   E GR   +  +     I+HL
Sbjct: 15  NGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHL 74

Query: 643 FFAGD 647
            FA D
Sbjct: 75  LFADD 79


>PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R1 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1004

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 15/243 (6%)

Query: 377 VPKLKEVVRFLLVQPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVW---- 432
           + +LK + R  L   +  +EV  ++   K   +PGPDG      +  W  + + ++    
Sbjct: 391 IDRLKAIAR-PLPPDLEMDEVSDSVRRCKVRKSPGPDGIVGEMVRAVWGAIPEYMFCLYK 449

Query: 433 KVVSEAFESGKVDERLLEILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPF 492
           + + E++   K     L IL+ L+ ++        +RPI L +   K++  ++V R+   
Sbjct: 450 QCLLESYFPQKWKIASLVILLKLLDRIRSDPG--SYRPICLLDNLGKVLEGIMVKRLDQK 507

Query: 493 LNDI-VGPMQNSFLPGRGTMDNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSF 551
           L D+ V P Q +F  G+ T D    A   + +       K  +   ID + A+D++ W  
Sbjct: 508 LMDVEVSPYQFAFTYGKSTED----AWRCVQRHVECSEMKYVIGLNIDFQGAFDNLGW-- 561

Query: 552 LRETLELYEFPLVIIDLIMCYVSSSQISLLWNGAPLPSFKPGRGLRQGDPKSPYFFVLCM 611
           L   L+L E       L M Y    ++  +     +      RG  QG    P  + L M
Sbjct: 562 LSMLLKLDEAQSNEFGLWMSYFGGRKVYYV-GKTGIVRKDVTRGCPQGSKSGPAMWKLVM 620

Query: 612 ERL 614
             L
Sbjct: 621 NEL 623


>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 606

 Score = 41.6 bits (96), Expect = 0.014
 Identities = 34/142 (23%), Positives = 64/142 (44%), Gaps = 8/142 (5%)

Query: 509 GTMDNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETLELYEFPLVIIDL 568
           GT+ N  +    I ++ R   +  N+   +D+ KA+D++S   +   +  +     + D 
Sbjct: 1   GTLANIIMLEHYI-KLRRLKGKTYNVV-SLDIRKAFDTVSHPAILRAMRAFGIDDGMQDF 58

Query: 569 IMCYVSSSQISLLWNGAPLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQNLVEPGRWK 628
           IM  ++ +  +++  G          G++QGDP SP  F + ++ L   + N  +PG   
Sbjct: 59  IMSTITDAYTNIVVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRL-NDEQPGA-- 115

Query: 629 PLHRTAGGTGISHLFFAGDVLL 650
                     I+ L FA D+LL
Sbjct: 116 ---SMTPACKIASLAFADDLLL 134


>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
           jockey (EC 2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 38.9 bits (89), Expect = 0.092
 Identities = 35/164 (21%), Positives = 66/164 (39%), Gaps = 17/164 (10%)

Query: 335 LKLSDGSWCSDTSKLQEEALGYFQALFAGNQEASQTPFPGDNVPKLKEVVRFLL------ 388
           +K   G WC  + +  E        +FA N E   TP+        ++V  +L       
Sbjct: 381 IKNPSGGWCRTSLEKTE--------VFANNLEQRFTPYNYAPESLCRQVEEYLESPFQMS 432

Query: 389 --VQPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGKVDE 446
             +  V+ EEV+  +  +    APG D       +   +Q    +  + +   + G   +
Sbjct: 433 LPLSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPK 492

Query: 447 RLLEILVVLIPKVNH-PTSIKEFRPISLCNVTYKLITKLLVNRI 489
                 +++I K    PT +  +RP SL     K++ +L++NR+
Sbjct: 493 AWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRL 536


>YKFC_ECOLI (Q47688) Hypothetical protein ykfC
          Length = 376

 Score = 36.2 bits (82), Expect = 0.59
 Identities = 74/371 (19%), Positives = 135/371 (35%), Gaps = 81/371 (21%)

Query: 387 LLVQPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGKVDE 446
           L+ QP    E  +  +S K    PG DG      K   +       +++ +   SG    
Sbjct: 23  LITQPEWLAEAARITLSSKGAHTPGVDGVN----KTMLQARLAVELQILRDELLSGHYQP 78

Query: 447 RLLEILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPMQNSFLP 506
             L    V IPK N      + RP+ +  +  +++ + ++  + P        +   F P
Sbjct: 79  --LPARRVYIPKSNG-----KLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRP 131

Query: 507 GRGTMDNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETLELYEFPLVII 566
            R ++ +A    ++  Q+      +G    + DL   +D++    L + +         +
Sbjct: 132 ER-SVHHAIRTVKL--QLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFM 188

Query: 567 DLIMCYVSSSQISL-LWNGAPLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQ------ 619
            L+   + +  I + L+  A         G+ QG   SP    + +     ++       
Sbjct: 189 TLLWKTIKAGHIDVGLFRAA-------SEGVPQGGVISPLLSNIMLNEFDQYLHERYLSG 241

Query: 620 ----------NLVEPGR---------WKPLHRTAGGTGISHLFFAGDVLLFCKASVAQVT 660
                     N ++ GR         WKP         +++  +A D +L  K + AQV 
Sbjct: 242 KARKDRWYWNNSIQRGRSTAVRENWQWKP--------AVAYCRYADDFVLIVKGTKAQVE 293

Query: 661 VLVDALQFLCEGSV-LRINVQKSKAITSIGVAPEVRTEIGLRALIPFVNDLGKYLGFPLQ 719
            + +  + + EGS+ LR+N+ K+K                    IP VND     GF   
Sbjct: 294 AIREECRGVLEGSLKLRLNMDKTK--------------------IPHVND-----GFIFL 328

Query: 720 GRRLNSERCEY 730
           G RL  +R  Y
Sbjct: 329 GHRLIRKRSRY 339


>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
           retrotransposable element R1DM (ORF 2)
          Length = 1021

 Score = 35.4 bits (80), Expect = 1.0
 Identities = 36/157 (22%), Positives = 63/157 (39%), Gaps = 7/157 (4%)

Query: 396 EVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESG--KVDERLLEILV 453
           EV   +  +KS  +PG DG      K  W  + + +  + S     G    + +   ++ 
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVS 497

Query: 454 VLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPMQNSFLPGRGTMDN 513
           +L            +R I L  V  K++  ++VNR+R  L +     Q  F  GR   D 
Sbjct: 498 LLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGC-RWQFGFRQGRCVED- 555

Query: 514 AFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWS 550
              A   +     + A +  L   +D + A+D++ WS
Sbjct: 556 ---AWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWS 589


>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
           jockey (EC 2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 35.4 bits (80), Expect = 1.0
 Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 23/162 (14%)

Query: 340 GSWCSDTSKLQEEALGY----FQAL-FAGNQ------EASQTPFPGDNVPKLKEVVRFLL 388
           G WC  + +  E    +    F+AL FA         E+ QTPF              L 
Sbjct: 386 GGWCRTSREKTEVFANHLEQRFKALAFAPESHSLMVAESLQTPFQ-----------MALP 434

Query: 389 VQPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGKVDE-R 447
             PV+ EEV++ +  +K   APG D       +   +Q    +  + +     G   + R
Sbjct: 435 ADPVTLEEVKELVSKLKPKKAPGEDLLDNRTIRLLPDQALLYLVLIFNSILRVGYFPKAR 494

Query: 448 LLEILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRI 489
               +++++     P  +  +RP SL     K++ +L++NRI
Sbjct: 495 PTASIIMILKPGKQPLDVDSYRPTSLLPSLGKMLERLILNRI 536


>RTL_CHLRE (P11660) Reverse transcriptase-like protein
          Length = 368

 Score = 34.3 bits (77), Expect = 2.3
 Identities = 32/112 (28%), Positives = 45/112 (39%), Gaps = 13/112 (11%)

Query: 504 FLPGRGTMDNAFLA*EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETLELYEFPL 563
           F PG GT        +   QM     +   + F  DL+ AY+S+    L +TL+L   P 
Sbjct: 152 FRPGFGTHHAVLHLAQKAQQMLNKQQQAVLVTF--DLQAAYNSVDIKHLMQTLQLQYLPN 209

Query: 564 VIIDLIMCYVSSSQISLLWNGAPLPSFKPG-RGLRQGDPKSPYFFVLCMERL 614
            +  LI           +W   PL     G  GL QG   SP  F   +++L
Sbjct: 210 DMKKLIW----------MWQHLPLAQLNAGINGLAQGYAYSPTLFAWYVDQL 251


>AI1M_YEAST (P03875) COX1/OXI3 intron 1 protein
          Length = 834

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 18/179 (10%)

Query: 459 VNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPMQNSFLPG-RGTMDNAFLA 517
           VN P      RP+S+ N   K++ +++    R  L+ I     ++   G R  M      
Sbjct: 313 VNIPKPKGGMRPLSVGNPRDKIVQEVM----RMILDTIFDKKMSTHSHGFRKNMSCQTAI 368

Query: 518 *EIIHQMHRSMARKGNLAFKIDLEKAYDSISWSFLRETLELYEFPLVIIDLIMCYVSSSQ 577
            E+     R+M    N   ++DL+K +D+IS   + + L+ Y      IDL+   + +  
Sbjct: 369 WEV-----RNMFGGSNWFIEVDLKKCFDTISHDLIIKELKRYISDKGFIDLVYKLLRAGY 423

Query: 578 ISLLWNGAPLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQ---NLVEPGRWKPLHRT 633
           I            KP  GL QG   SP    + M  +   ++   NL   G+ K  H T
Sbjct: 424 ID-----EKGTYHKPMLGLPQGSLISPILCNIVMTLVDNWLEDYINLYNKGKVKKQHPT 477


>ANS1_MOUSE (P59672) Ankyrin repeat and SAM domain protein 1
          Length = 1150

 Score = 33.5 bits (75), Expect = 3.8
 Identities = 39/173 (22%), Positives = 71/173 (40%), Gaps = 21/173 (12%)

Query: 302 SYGTRKLERT---GSDWGTLTNTQAVI---------IRKRNSVHRLKLSDGSWCSDTSKL 349
           S G ++LE++    S+W  +    + I          +K +    L+ S G W       
Sbjct: 668 SIGKKRLEKSPSFASEWDEIEKIMSSIGEGIDFSQEQQKISGSRTLEQSVGEWLESIGLQ 727

Query: 350 QEEALGYFQALFAGNQEASQTPFPGDNVPKLKEVVRFLLVQPVSKEEVRQALMSMKSFTA 409
           Q E+    + L  G  +     F G NV + +++    +  P  + ++ QA  S+    A
Sbjct: 728 QYES----KLLLNGFDDVR---FLGSNVMEEQDLREIGISDPQHRRKLLQAARSLPKVKA 780

Query: 410 PGPDGFQPFFFKQYWEQVG--DTVWKVVSEAFESGKVDERLLEILVVLIPKVN 460
            G DG  P     + + +G  D V   +S  + S    + L E+ +V + KV+
Sbjct: 781 LGYDGVSPTSVPSWLDSLGLQDYVHSFLSSGYSSIDTVKNLWELELVNVLKVH 833


>DYHC_YEAST (P36022) Dynein heavy chain, cytosolic (DYHC)
          Length = 4092

 Score = 33.1 bits (74), Expect = 5.0
 Identities = 21/66 (31%), Positives = 33/66 (49%), Gaps = 1/66 (1%)

Query: 443 KVDERLLEILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPMQN 502
           K D R LE  + L+PK+ H  ++    PIS   ++Y L  +  ++ I  +L  + G   N
Sbjct: 555 KKDIRQLETGLELLPKILHVEALNNIPPIS-ARISYFLNVQSRIDNIVQYLEALFGSNWN 613

Query: 503 SFLPGR 508
             L GR
Sbjct: 614 DTLEGR 619


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.340    0.149    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,851,767
Number of Sequences: 164201
Number of extensions: 5794982
Number of successful extensions: 14485
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 14446
Number of HSP's gapped (non-prelim): 26
length of query: 1291
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1169
effective length of database: 39,941,532
effective search space: 46691650908
effective search space used: 46691650908
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 72 (32.3 bits)