BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0283.2
(142 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UB72_DEIRA (Q9RV58) Protein DR1172 39 0.005
YH32_AQUAE (O67622) Hypothetical UPF0144 protein AQ_1732 35 0.070
PCAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associa... 34 0.12
NR41_HUMAN (P22736) Orphan nuclear receptor NR4A1 (Orphan nuclea... 33 0.20
TEGU_EHV1B (P28955) Large tegument protein 32 0.35
NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130... 32 0.35
BCHN_HELMO (Q9ZGE9) Light-independent protochlorophyllide reduct... 32 0.35
MM09_MOUSE (P41245) 92 kDa type IV collagenase precursor (EC 3.4... 32 0.45
ZIPA_ECOLI (P77173) Cell division protein zipA 31 0.77
ZIPA_ECO57 (Q8X492) Cell division protein zipA 31 0.77
SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1) 31 0.77
SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I) 31 0.77
PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment) 31 0.77
IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2 31 0.77
IF2_CORGL (Q8NP40) Translation initiation factor IF-2 31 0.77
GBX2_MOUSE (P48031) Homeobox protein GBX-2 (Gastrulation and bra... 31 0.77
GBX2_HUMAN (P52951) Homeobox protein GBX-2 (Gastrulation and bra... 31 0.77
PCAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associa... 31 1.0
LED3_DAUCA (P83442) Late embryogenesis abundant protein Dc3 31 1.0
LEA2_CICAR (O49817) Late embryogenesis abundant protein 2 (CapLE... 31 1.0
>UB72_DEIRA (Q9RV58) Protein DR1172
Length = 298
Score = 38.5 bits (88), Expect = 0.005
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 95 QPSSEAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKAESAYQSAKKT 140
Q + AQQA S KDK D+K A A + AKDKA+ Q+ K++
Sbjct: 197 QNVKQGAQQAASDAKDKVQDVKADASRAADQAKDKAQDVAQNVKQS 242
Score = 35.4 bits (80), Expect = 0.041
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 101 AQQAFSYGKDKAYDIKDKAEVAYEDAKDKAESAYQSAKK 139
AQQA + KDK D+K A A + AKDKA+ Q+ K+
Sbjct: 163 AQQAAANVKDKVQDVKADASKAADQAKDKAQDVAQNVKQ 201
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 97 SSEAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKAESAYQSAKK 139
+S+AA QA +D A ++K A+ A DAKDK + A +
Sbjct: 181 ASKAADQAKDKAQDVAQNVKQGAQQAASDAKDKVQDVKADASR 223
Score = 29.6 bits (65), Expect = 2.2
Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 99 EAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKAESAYQSAK 138
EAA A KDKA D+K A + AKDKA+ Q+ +
Sbjct: 122 EAADLA-DQAKDKAQDVKADVSKAADQAKDKAQDVAQNVQ 160
>YH32_AQUAE (O67622) Hypothetical UPF0144 protein AQ_1732
Length = 558
Score = 34.7 bits (78), Expect = 0.070
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 83 EAPAPGPFASAPQPSSEAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKAESAYQSAKK 139
+APAP P PS + ++A S ++ + K+KAEV ++AK+ AE + A++
Sbjct: 28 QAPAP---TYQPVPSPQILEEAKSKAEEIIKEAKEKAEVILKEAKESAEKIVREAEE 81
>PCAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associated
protein (PC2 glutamine/Q-rich-associated protein)
(TPA-inducible gene-1) (TIG-1) (Activator-recruited
cofactor 105 kDa component) (ARC105) (CTG repeat protein
7a)
Length = 788
Score = 33.9 bits (76), Expect = 0.12
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 22 PDSPATSPSPSQKSDSPPSFASW----AYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTG 77
P P SP P Q S P S S + F P + PV RT +N
Sbjct: 449 PPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNF------- 501
Query: 78 LGAPVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAY 113
P+PGP + PSS + S +++ Y
Sbjct: 502 -----SVPSPGPLNTPVNPSSVMSPAGSSQAEEQQY 532
>NR41_HUMAN (P22736) Orphan nuclear receptor NR4A1 (Orphan nuclear
receptor HMR) (Early response protein NAK1) (TR3 orphan
receptor)
Length = 598
Score = 33.1 bits (74), Expect = 0.20
Identities = 28/79 (35%), Positives = 34/79 (42%), Gaps = 8/79 (10%)
Query: 24 SPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTGLGAPVE 83
SP ++PSPS S PP + W F H F P + E L TE L G P +
Sbjct: 134 SPCSAPSPSTPSFQPPQLSPWD-GSFGH-FSPSQTYEG-LRAWTEQLPKASG-----PPQ 185
Query: 84 APAPGPFASAPQPSSEAAQ 102
PA F+ PS AQ
Sbjct: 186 PPAFFSFSPPTGPSPSLAQ 204
>TEGU_EHV1B (P28955) Large tegument protein
Length = 3421
Score = 32.3 bits (72), Expect = 0.35
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 80 APVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKAESAYQSAKK 139
AP APA A A P+ AA A + KD+ + + A + AKD+A+ + K
Sbjct: 2829 APAAAPAKSAAAPAAAPAKSAAAPAAAPAKDQTKSAAEVPKPAKDQAKDQAKDQAKDQAK 2888
Score = 28.1 bits (61), Expect = 6.5
Identities = 22/63 (34%), Positives = 27/63 (41%), Gaps = 4/63 (6%)
Query: 80 APVEAPAPGPFASAPQPSSEAAQQAFSYGKD----KAYDIKDKAEVAYEDAKDKAESAYQ 135
AP APA A A P+ AA A + K A K A A AKD+ +SA +
Sbjct: 2807 APAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKDQTKSAAE 2866
Query: 136 SAK 138
K
Sbjct: 2867 VPK 2869
>NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130
kDa protein) (140 kDa nucleolar phosphoprotein)
(Nopp140) (Nucleolar and coiled-body phosphoprotein 1)
Length = 699
Score = 32.3 bits (72), Expect = 0.35
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 87 PGPFASAPQPSSEAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKAESAYQSAKKTVT 142
PGP++ AP PS+ +++ K K + + ED+ D+++S+ + KK T
Sbjct: 286 PGPYSYAPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPT 341
>BCHN_HELMO (Q9ZGE9) Light-independent protochlorophyllide reductase
subunit N (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit
N)
Length = 440
Score = 32.3 bits (72), Expect = 0.35
Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 5/64 (7%)
Query: 61 PVLPRTTENLQTGFGTGLGAPVEAPAPGPFASAP--QPSSEAAQQAFSYGKDKAYDIKDK 118
PVLP +T + F G A + A P AP +P E + FS+GK+ K+K
Sbjct: 122 PVLPASTSGIDRSFTQGEDAVLHALLPFVPKEAPAVEPVEEKKPRWFSFGKESE---KEK 178
Query: 119 AEVA 122
AE A
Sbjct: 179 AEPA 182
>MM09_MOUSE (P41245) 92 kDa type IV collagenase precursor (EC
3.4.24.35) (92 kDa gelatinase) (Matrix
metalloproteinase-9) (MMP-9) (Gelatinase B) (GELB)
Length = 730
Score = 32.0 bits (71), Expect = 0.45
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 22 PDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTGLGAP 81
P + T P P+ P+ AY GP P T + G P
Sbjct: 454 PATTTTEPQPTAPPTMCPTIPPTAYPTVGPTVGPTGAPSP---GPTSSPSPG-------P 503
Query: 82 VEAPAPGPFASAPQPSSEAAQQAFS 106
AP+PGP A+ SSEA+ ++ S
Sbjct: 504 TGAPSPGPTAAPTAGSSEASTESLS 528
>ZIPA_ECOLI (P77173) Cell division protein zipA
Length = 328
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 80 APVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKA 130
+P APAP P SAPQP+ +A Q A + + + A V + + +A
Sbjct: 143 SPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEA 193
>ZIPA_ECO57 (Q8X492) Cell division protein zipA
Length = 328
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 80 APVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKA 130
+P APAP P SAPQP+ +A Q A + + + A V + + +A
Sbjct: 143 SPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEA 193
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)
Length = 705
Score = 31.2 bits (69), Expect = 0.77
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 54 GPYRNDEPVLPRTTENLQ---TGFGTGLGAPVEAPAPGPFASAPQPSSEAAQQAFSYGK 109
GP R P+ R Q +G G G+P+ P P ++ QP+S+AA G+
Sbjct: 473 GPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGR 531
>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)
Length = 706
Score = 31.2 bits (69), Expect = 0.77
Identities = 18/59 (30%), Positives = 26/59 (43%), Gaps = 3/59 (5%)
Query: 54 GPYRNDEPVLPRTTENLQ---TGFGTGLGAPVEAPAPGPFASAPQPSSEAAQQAFSYGK 109
GP R P+ R T Q +G G G+P+ P P + QP+S+A G+
Sbjct: 473 GPQRQGPPLQQRPTPQGQQHLSGLGPPAGSPLPQRLPSPTSVPQQPASQATPMTQGQGR 531
>PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment)
Length = 5120
Score = 31.2 bits (69), Expect = 0.77
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 21 RPDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTGLGA 80
RP S +P P Q +P +FS G + P T + TG G GA
Sbjct: 659 RPTSAQPAPQPQQPQKTPEQSR-----RFSLNLGGITDAPKPQPTTPQETVTGKLFGFGA 713
Query: 81 PVEAPAPGPFASAPQPSSEAAQQA 104
+ + A ++A QP S+ + A
Sbjct: 714 SIFSQASSLISTAGQPGSQTSGPA 737
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2
Length = 1033
Score = 31.2 bits (69), Expect = 0.77
Identities = 25/81 (30%), Positives = 32/81 (38%), Gaps = 9/81 (11%)
Query: 59 DEPVLPRTTENLQTGFGTG--LGAPVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAYDIK 116
+ PV+ + T+ Q G G G G P P SAP P+ QA A
Sbjct: 39 EAPVVRKLTDAFQQGGGNGRSAGRPAAPKKAAPRPSAPSPAQAGPSQA-------APAAG 91
Query: 117 DKAEVAYEDAKDKAESAYQSA 137
D+A A KA +A Q A
Sbjct: 92 DRAAAPRPSAAPKAPAAQQPA 112
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2
Length = 1004
Score = 31.2 bits (69), Expect = 0.77
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 22 PDSPATSPSPSQ-KSDSPPSFASWAYDKFSHVFGPYRND-----EPVLPRTTENLQTGFG 75
P PA +PS KS S P A+ A FS GP D EP E + G
Sbjct: 130 PAKPAAPAAPSAAKSGSAPKPAAAAKPAFS---GPTPGDAAKKAEPAAKPGAEAPRPG-- 184
Query: 76 TGLGAPVEAPAPGPFASAPQPSSEAAQQAFSYG 108
G+ P+ PAP P A AP+ A FS G
Sbjct: 185 -GMPRPMGKPAPKPGARAPR----VANNPFSTG 212
>GBX2_MOUSE (P48031) Homeobox protein GBX-2 (Gastrulation and
brain-specific homeobox protein 2) (Homeobox protein
STRA7)
Length = 348
Score = 31.2 bits (69), Expect = 0.77
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 60 EPVLP-----RTTENLQTGF------GTGLGAPVEAPAPGPFASAPQPSSEAAQQAFSYG 108
+P LP +L TGF G L + + A PG F+++PQ AA + F+
Sbjct: 71 QPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLPGGFSASPQHQEAAAARKFAPQ 130
Query: 109 KDKAYDIKDKAEVAYEDAKD 128
DKAE DA+D
Sbjct: 131 PLPGGGNFDKAEALQADAED 150
>GBX2_HUMAN (P52951) Homeobox protein GBX-2 (Gastrulation and
brain-specific homeobox protein 2)
Length = 348
Score = 31.2 bits (69), Expect = 0.77
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 60 EPVLP-----RTTENLQTGF------GTGLGAPVEAPAPGPFASAPQPSSEAAQQAFSYG 108
+P LP +L TGF G L + + A PG F+++PQ AA + F+
Sbjct: 71 QPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLPGGFSASPQHQEAAAARKFAPQ 130
Query: 109 KDKAYDIKDKAEVAYEDAKD 128
DKAE DA+D
Sbjct: 131 PLPGGGNFDKAEALQADAED 150
>PCAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associated
protein (PC2 glutamine/Q-rich-associated protein)
(mPcqap)
Length = 792
Score = 30.8 bits (68), Expect = 1.0
Identities = 24/93 (25%), Positives = 36/93 (37%), Gaps = 13/93 (13%)
Query: 22 PDSPATSPSP-SQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTGLGA 80
P P SP P SQ + + S + + F P + PV RT +N
Sbjct: 453 PPPPQPSPQPGSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSV-------- 504
Query: 81 PVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAY 113
P+PGP + PSS + S +++ Y
Sbjct: 505 ----PSPGPLNTPVNPSSVMSPAGSSQAEEQQY 533
>LED3_DAUCA (P83442) Late embryogenesis abundant protein Dc3
Length = 163
Score = 30.8 bits (68), Expect = 1.0
Identities = 18/48 (37%), Positives = 25/48 (51%)
Query: 92 SAPQPSSEAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKAESAYQSAKK 139
SA + E+ Q SY DKA +KDK + AK+K A Q+ K+
Sbjct: 46 SARDRTVESKDQTGSYVSDKAGAVKDKTCETAQAAKEKTGGAMQATKE 93
>LEA2_CICAR (O49817) Late embryogenesis abundant protein 2
(CapLEA-2)
Length = 155
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 97 SSEAAQQAFSYGKDKAYDIKDKAEVAYEDAKDKAESAYQSAKK 139
+ E Q +DKA K+KA+ A + AKDK Q+AK+
Sbjct: 17 TEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKE 59
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 4/56 (7%)
Query: 88 GPFASAPQPSSEAAQQAFSYGKDK----AYDIKDKAEVAYEDAKDKAESAYQSAKK 139
G Q + E AQQA KDK A K+K + + AKDK + Q+ K+
Sbjct: 26 GNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQQTAQAAKDKTQQTTQATKE 81
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.128 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,765,130
Number of Sequences: 164201
Number of extensions: 887451
Number of successful extensions: 3594
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 3392
Number of HSP's gapped (non-prelim): 237
length of query: 142
length of database: 59,974,054
effective HSP length: 99
effective length of query: 43
effective length of database: 43,718,155
effective search space: 1879880665
effective search space used: 1879880665
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0283.2