BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0283.1
(2478 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 223 7e-57
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 223 7e-57
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 223 7e-57
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 222 1e-56
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 220 3e-56
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 199 1e-49
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 198 2e-49
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 197 2e-49
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 180 5e-44
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 177 3e-43
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 176 6e-43
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 167 3e-40
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 154 3e-36
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 149 9e-35
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 147 3e-34
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 145 1e-33
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 125 2e-27
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 124 4e-27
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 106 7e-22
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 97 7e-19
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 223 bits (567), Expect = 7e-57
Identities = 116/288 (40%), Positives = 176/288 (60%), Gaps = 1/288 (0%)
Query: 1035 KARPIQMNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELERGALRLVINYK 1094
K +P++ + + ++I E L+ +I+ SKSP F V N +E RG R+V+NYK
Sbjct: 248 KVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYK 307
Query: 1095 PLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHY 1154
+NK Y LPNK +L+ + IFS FD KSG++Q+ + +E R TAF P GHY
Sbjct: 308 AMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHY 367
Query: 1155 EWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGIDQHVQHLEKFIEIIK 1214
EWNV+P GLK APS +Q M++ F + F VY+DD+LVFS + H+ H+ ++
Sbjct: 368 EWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCN 427
Query: 1215 KNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCV 1274
++G+++S KK ++F+ K FLG EI +G P LE KFPD L++K QLQRFLG +
Sbjct: 428 QHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGIL 487
Query: 1275 NYVADFIPNIRIVCAPLFKRLRKNSP-PWSEEMSHSVREVKKLVQSLP 1321
Y +D+IP + + PL +L++N P W++E + +++VKK +Q P
Sbjct: 488 TYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFP 535
Score = 43.5 bits (101), Expect = 0.007
Identities = 21/45 (46%), Positives = 27/45 (59%)
Query: 2433 KSSWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNK 2477
KS AF VN +AE RG R+V+NYK +N+A Y +PNK
Sbjct: 279 KSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNK 323
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 223 bits (567), Expect = 7e-57
Identities = 116/288 (40%), Positives = 176/288 (60%), Gaps = 1/288 (0%)
Query: 1035 KARPIQMNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELERGALRLVINYK 1094
K +P++ + + ++I E L+ +I+ SKSP F V N +E RG R+V+NYK
Sbjct: 248 KVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYK 307
Query: 1095 PLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHY 1154
+NK Y LPNK +L+ + IFS FD KSG++Q+ + +E R TAF P GHY
Sbjct: 308 AMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHY 367
Query: 1155 EWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGIDQHVQHLEKFIEIIK 1214
EWNV+P GLK APS +Q M++ F + F VY+DD+LVFS + H+ H+ ++
Sbjct: 368 EWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCN 427
Query: 1215 KNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCV 1274
++G+++S KK ++F+ K FLG EI +G P LE KFPD L++K QLQRFLG +
Sbjct: 428 QHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGIL 487
Query: 1275 NYVADFIPNIRIVCAPLFKRLRKNSP-PWSEEMSHSVREVKKLVQSLP 1321
Y +D+IP + + PL +L++N P W++E + +++VKK +Q P
Sbjct: 488 TYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFP 535
Score = 43.5 bits (101), Expect = 0.007
Identities = 21/45 (46%), Positives = 27/45 (59%)
Query: 2433 KSSWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNK 2477
KS AF VN +AE RG R+V+NYK +N+A Y +PNK
Sbjct: 279 KSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNK 323
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 223 bits (567), Expect = 7e-57
Identities = 116/288 (40%), Positives = 176/288 (60%), Gaps = 1/288 (0%)
Query: 1035 KARPIQMNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELERGALRLVINYK 1094
K +P++ + + ++I E L+ +I+ SKSP F V N +E RG R+V+NYK
Sbjct: 248 KVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYK 307
Query: 1095 PLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHY 1154
+NK Y LPNK +L+ + IFS FD KSG++Q+ + +E R TAF P GHY
Sbjct: 308 AMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHY 367
Query: 1155 EWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGIDQHVQHLEKFIEIIK 1214
EWNV+P GLK APS +Q M++ F + F VY+DD+LVFS + H+ H+ ++
Sbjct: 368 EWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCN 427
Query: 1215 KNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCV 1274
++G+++S KK ++F+ K FLG EI +G P LE KFPD L++K QLQRFLG +
Sbjct: 428 QHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGIL 487
Query: 1275 NYVADFIPNIRIVCAPLFKRLRKNSP-PWSEEMSHSVREVKKLVQSLP 1321
Y +D+IP + + PL +L++N P W++E + +++VKK +Q P
Sbjct: 488 TYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFP 535
Score = 43.5 bits (101), Expect = 0.007
Identities = 21/45 (46%), Positives = 27/45 (59%)
Query: 2433 KSSWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNK 2477
KS AF VN +AE RG R+V+NYK +N+A Y +PNK
Sbjct: 279 KSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNK 323
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 222 bits (565), Expect = 1e-56
Identities = 116/288 (40%), Positives = 177/288 (61%), Gaps = 1/288 (0%)
Query: 1035 KARPIQMNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELERGALRLVINYK 1094
K +P++ + + ++I E L+ +I+ SKSP F V N +E RG R+V+NYK
Sbjct: 249 KVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYK 308
Query: 1095 PLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHY 1154
+NK Y LPNK +L+ + IFS FD KSG++Q+ + +E R TAF P GHY
Sbjct: 309 AMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHY 368
Query: 1155 EWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGIDQHVQHLEKFIEIIK 1214
EWNV+P GLK APS +Q M++ F + F VY+DD++VFS + H+ H+ ++
Sbjct: 369 EWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCN 428
Query: 1215 KNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCV 1274
++G+++S KK ++F+ K FLG EI +G P LE KFPD L++K QLQRFLG +
Sbjct: 429 QHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGIL 488
Query: 1275 NYVADFIPNIRIVCAPLFKRLRKNSP-PWSEEMSHSVREVKKLVQSLP 1321
Y +D+IPN+ + PL +L++N P W++E + +++VKK +Q P
Sbjct: 489 TYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFP 536
Score = 43.1 bits (100), Expect = 0.010
Identities = 21/45 (46%), Positives = 27/45 (59%)
Query: 2433 KSSWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNK 2477
KS AF VN +AE RG R+V+NYK +N+A Y +PNK
Sbjct: 280 KSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNK 324
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 220 bits (561), Expect = 3e-56
Identities = 115/288 (39%), Positives = 175/288 (59%), Gaps = 1/288 (0%)
Query: 1035 KARPIQMNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELERGALRLVINYK 1094
K +P++ + + ++I E L+ +I+ SKSP F V N +E RG R+V+NYK
Sbjct: 243 KVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYK 302
Query: 1095 PLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHY 1154
+NK Y PNK +L+ + IFS FD KSG++Q+ + +E R TAF P GHY
Sbjct: 303 AMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHY 362
Query: 1155 EWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGIDQHVQHLEKFIEIIK 1214
EWNV+P GLK APS +Q M++ F + F VY+DD+LVFS + H+ H+ ++
Sbjct: 363 EWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCN 422
Query: 1215 KNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCV 1274
++G+++S KK ++F+ K FLG EI +G P LE KFPD L++K QLQRFLG +
Sbjct: 423 QHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGIL 482
Query: 1275 NYVADFIPNIRIVCAPLFKRLRKNSP-PWSEEMSHSVREVKKLVQSLP 1321
Y +D+IP + + PL +L++N P W++E + +++VKK +Q P
Sbjct: 483 TYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFP 530
Score = 41.6 bits (96), Expect = 0.028
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 2433 KSSWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNK 2477
KS AF VN +AE RG R+V+NYK +N+A Y PNK
Sbjct: 274 KSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNK 318
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 692
Score = 199 bits (505), Expect = 1e-49
Identities = 138/421 (32%), Positives = 218/421 (51%), Gaps = 35/421 (8%)
Query: 927 DFRINIVALIDSGADI-------NCIQEGLIPTQFYEKTKEGVNSANGSKMNIQYKLSNA 979
+F I I+ L DSG D+ Q + + E + +N+ S+M +S
Sbjct: 86 EFLIPIIYLHDSGLDLIIGNNFLKLYQPFIQRLETIELRWKNLNNPKESQM-----ISTK 140
Query: 980 KICKNQICFKSSFVLVKNMTEKVILGTLF------ICLLYPKVHT-------IALPYIDE 1026
+ KN++ K SF + EK + +C +P T I + D
Sbjct: 141 ILTKNEV-LKLSFEKIHICLEKYLFFKTIEEQLEEVCSEHPLDETKNKNGLLIEIRLKDP 199
Query: 1027 FNEKDIPTKARPIQMNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELERGA 1086
E ++ + I + ++ +EE + L KGLIR S+SP S FYV N +E++RG
Sbjct: 200 LQEINVTNR---IPYTIRDVQEFKEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKRGK 256
Query: 1087 LRLVINYKPLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTA 1146
R+VINYK +N+ Y LP K +++++ FS D KSGYYQ+ + E + TA
Sbjct: 257 RRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTA 316
Query: 1147 F-VVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGI-DQHVQ 1204
F P HYEWNV+ GLK APS YQ M+ + + Y+DD+L+F+KG +QHV
Sbjct: 317 FSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKGLEHICLAYIDDILIFTKGSKEQHVN 376
Query: 1205 HLEKFIEIIKKNGLVVSAKKMKIFETKTRFLGYEIY-QGQITPIQRSLEFAKKFPDELKE 1263
+ ++ IK+ G+++S KK K+ + + +LG +I G+I + E +FPDEL++
Sbjct: 377 DVRIVLQRIKEKGIIISKKKSKLIQQEIEYLGLKIQGNGEIDLSPHTQEKILQFPDELED 436
Query: 1264 KTQLQRFLGCVNYVAD--FIPNIRIVCAPLFKRLR-KNSPPWSEEMSHSVREVKKLVQSL 1320
+ Q+QRFLGC+NY+A+ F N+ + L K++ KN W + V+ +K +QSL
Sbjct: 437 RKQIQRFLGCINYIANEGFFKNLALERKHLQKKISVKNPWKWDTIDTKMVQSIKGKIQSL 496
Query: 1321 P 1321
P
Sbjct: 497 P 497
Score = 50.4 bits (119), Expect = 6e-05
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 44/229 (19%)
Query: 2292 DILKKTTEKLSAAEGSRLIIKYKIPSAIIKNGSLEIETPFLLVRNLSQKVIIGTPFIKKL 2351
+ILK+ E + A+ S+ I+ I + +K + E P + + + +IIG F+K
Sbjct: 53 EILKQPKE-IIIADKSKHYIREAISNVFLKIENKEFLIPIIYLHDSGLDLIIGNNFLKLY 111
Query: 2352 FPYDTDVNGITVQ--HLGQPILFKFSEPPFDKTLNVISYKEKQINF-LKEEISYKNIEVQ 2408
P+ + I ++ +L P + V+ ++I+ L++ + +K IE Q
Sbjct: 112 QPFIQRLETIELRWKNLNNPKESQMISTKILTKNEVLKLSFEKIHICLEKYLFFKTIEEQ 171
Query: 2409 L----------------------------QQPSVKSRIENILGNIQSSICSCK------- 2433
L Q+ +V +RI + ++Q C+
Sbjct: 172 LEEVCSEHPLDETKNKNGLLIEIRLKDPLQEINVTNRIPYTIRDVQEFKEECEDLLKKGL 231
Query: 2434 -----SSWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNK 2477
S S AFYV EI+RG R+VINYK +N+A Y +P K
Sbjct: 232 IRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEATIGDSYKLPRK 280
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 198 bits (503), Expect = 2e-49
Identities = 110/290 (37%), Positives = 167/290 (56%), Gaps = 3/290 (1%)
Query: 1035 KARPIQMNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELERGALRLVINYK 1094
K +P+ + + +I E L +I+ SKS F V N +E RG R+V+NYK
Sbjct: 230 KVKPMSYSPSDREEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYK 289
Query: 1095 PLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHY 1154
+NK K + LPNK +L+ + I+S FD KSG +Q+ + +E + TAF P GHY
Sbjct: 290 AMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHY 349
Query: 1155 EWNVMPQGLKNAPSEY-QNIMNDIFYPYMNFTIVYLDDVLVFSK-GIDQHVQHLEKFIEI 1212
+WNV+P GLK APS + + N Y + VY+DD+LVFS G +H H+ +
Sbjct: 350 QWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRR 409
Query: 1213 IKKNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLG 1272
+K G+++S KK ++F+ K FLG EI QG P LE KFPD +++K QLQRFLG
Sbjct: 410 CEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLG 469
Query: 1273 CVNYVADFIPNIRIVCAPLFKRLRKNSP-PWSEEMSHSVREVKKLVQSLP 1321
+ Y +D+IP + + PL +L+++S W++ S + ++KK ++S P
Sbjct: 470 ILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFP 519
Score = 38.9 bits (89), Expect = 0.18
Identities = 19/45 (42%), Positives = 27/45 (59%)
Query: 2433 KSSWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNK 2477
KS+ AF V +AE RG R+V+NYK +N+A + +PNK
Sbjct: 261 KSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNK 305
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 197 bits (502), Expect = 2e-49
Identities = 109/288 (37%), Positives = 166/288 (56%), Gaps = 1/288 (0%)
Query: 1035 KARPIQMNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELERGALRLVINYK 1094
+ +P+ + Q + ++I E L+ GLI SKS F V N +E RG R+V+NYK
Sbjct: 241 RVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYK 300
Query: 1095 PLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHY 1154
+N+ + LPN +L+ L +IFS FD KSG++Q+ + EE + TAF P GH+
Sbjct: 301 AINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHF 360
Query: 1155 EWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGIDQHVQHLEKFIEIIK 1214
+W V+P GLK APS +Q M F +VY+DD++VFS H H+ ++I++
Sbjct: 361 QWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVE 420
Query: 1215 KNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCV 1274
K G+++S KK +F+ K FLG EI +G P LE KFPD L++K LQRFLG +
Sbjct: 421 KYGIILSKKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVL 480
Query: 1275 NYVADFIPNIRIVCAPLFKRLRKN-SPPWSEEMSHSVREVKKLVQSLP 1321
Y +IP + + PL +L+K+ + W++ S V+++KK + S P
Sbjct: 481 TYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFP 528
Score = 39.3 bits (90), Expect = 0.14
Identities = 20/48 (41%), Positives = 26/48 (53%)
Query: 2429 ICSCKSSWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPN 2476
I KS AF V +AE RG R+V+NYK +NQA + +PN
Sbjct: 268 IIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPN 315
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 180 bits (456), Expect = 5e-44
Identities = 137/498 (27%), Positives = 240/498 (47%), Gaps = 65/498 (13%)
Query: 886 KQIPDKKNEDNNSQEPNENYLNLL----NLVITH---KWHSEITLVINDFRINIVALIDS 938
K+ KKN NS+ + ++ + N + H ++ + + DF+ +I LID+
Sbjct: 213 KESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDFKCSIPCLIDT 272
Query: 939 GADINCIQEGLI-----PTQFYEKTKEGVNSANGSKMNIQYKLSNAKICKNQICFKSSFV 993
GA N I E + PT+ + K+ V I K I N I K+ F+
Sbjct: 273 GAQANIITEETVRAHKLPTRPWSKS---VIYGGVYPNKINRKTIKLNISLNGISIKTEFL 329
Query: 994 LVKNMTEKVILG--TLFI--CLLYPKVHTIA-------------LPYI--------DEFN 1028
+VK + + TL+ + HT++ LP I E N
Sbjct: 330 VVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETN 389
Query: 1029 EKDIPTKARPIQMN-----EQY-------------LKYCREEIGEYLNKGLIRHSKSPWS 1070
+ +P + ++ E Y ++ +EI + L G+IR SK+ +
Sbjct: 390 TEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINA 449
Query: 1071 CIGFYVLNASELERGALRLVINYKPLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKS 1130
C +V + G LR+V++YKPLNK +K YPLP L+ ++ TIF+K D+KS
Sbjct: 450 CPVMFVPK----KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505
Query: 1131 GYYQISVREEDRYKTAFVVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIV-YL 1189
Y+ I VR+ D +K AF P G +E+ VMP G+ AP+ +Q +N I +V Y+
Sbjct: 506 AYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYM 565
Query: 1190 DDVLVFSKGIDQHVQHLEKFIEIIKKNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQR 1249
DD+L+ SK +HV+H++ ++ +K L+++ K + +++ +F+GY I + TP Q
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
Query: 1250 SLEFAKKFPDELKEKTQLQRFLGCVNYVADFIPNIRIVCAPLFKRLRKNSP-PWSEEMSH 1308
+++ ++ + K + +L++FLG VNY+ FIP + PL L+K+ W+ +
Sbjct: 626 NIDKVLQW-KQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 1309 SVREVKKLVQSLPIVTPF 1326
++ +K+ + S P++ F
Sbjct: 685 AIENIKQCLVSPPVLRHF 702
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 177 bits (449), Expect = 3e-43
Identities = 136/498 (27%), Positives = 240/498 (47%), Gaps = 65/498 (13%)
Query: 886 KQIPDKKNEDNNSQEPNENYLNLL----NLVITH---KWHSEITLVINDFRINIVALIDS 938
K+ KKN NS+ + ++ + N + H ++ + + DF+ +I LID+
Sbjct: 213 KESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDFKCSIPCLIDT 272
Query: 939 GADINCIQEGLI-----PTQFYEKTKEGVNSANGSKMNIQYKLSNAKICKNQICFKSSFV 993
GA N I E + PT+ + K+ V I K I N I K+ F+
Sbjct: 273 GAQANIITEETVRAHKLPTRPWSKS---VIYGGVYPNKINRKTIKLNISLNGISIKTEFL 329
Query: 994 LVKNMTEKVILG--TLFI--CLLYPKVHTIA-------------LPYI--------DEFN 1028
+VK + + TL+ + HT++ LP I E N
Sbjct: 330 VVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETN 389
Query: 1029 EKDIPTKARPIQMN-----EQY-------------LKYCREEIGEYLNKGLIRHSKSPWS 1070
+ +P + ++ E Y ++ +EI + L G+IR SK+ +
Sbjct: 390 TEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINA 449
Query: 1071 CIGFYVLNASELERGALRLVINYKPLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKS 1130
C +V + G LR+V++YKPLNK +K YPLP L+ ++ TIF+K D+KS
Sbjct: 450 CPVMFVPK----KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505
Query: 1131 GYYQISVREEDRYKTAFVVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIV-YL 1189
Y+ I VR+ D +K AF P G +E+ VMP G+ AP+ +Q +N I +V Y+
Sbjct: 506 AYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYM 565
Query: 1190 DDVLVFSKGIDQHVQHLEKFIEIIKKNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQR 1249
D++L+ SK +HV+H++ ++ +K L+++ K + +++ +F+GY I + TP Q
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
Query: 1250 SLEFAKKFPDELKEKTQLQRFLGCVNYVADFIPNIRIVCAPLFKRLRKNSP-PWSEEMSH 1308
+++ ++ + K + +L++FLG VNY+ FIP + PL L+K+ W+ +
Sbjct: 626 NIDKVLQW-KQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 1309 SVREVKKLVQSLPIVTPF 1326
++ +K+ + S P++ F
Sbjct: 685 AIENIKQCLVSPPVLRHF 702
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 176 bits (447), Expect = 6e-43
Identities = 135/498 (27%), Positives = 239/498 (47%), Gaps = 65/498 (13%)
Query: 886 KQIPDKKNEDNNSQEPNENYLNLL----NLVITH---KWHSEITLVINDFRINIVALIDS 938
K+ KKN NS+ + ++ + N + H ++ + + DF+ +I LID+
Sbjct: 213 KEFLPKKNNTTNSRNLRKTNISRIEYSSNKFLNHTRKRYEMVLQAELPDFKCSIPCLIDT 272
Query: 939 GADINCIQEGLI-----PTQFYEKTKEGVNSANGSKMNIQYKLSNAKICKNQICFKSSFV 993
G N I E + PT+ + K+ V I K I N I K+ F+
Sbjct: 273 GTQANIITEETVRAHKLPTRPWSKS---VIYGGVYPNKINRKTIKLNISLNGISIKTEFL 329
Query: 994 LVKNMTEKVILG--TLFI--CLLYPKVHTIA-------------LPYI--------DEFN 1028
+VK + + TL+ + HT++ LP I E N
Sbjct: 330 VVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETN 389
Query: 1029 EKDIPTKARPIQMN-----EQY-------------LKYCREEIGEYLNKGLIRHSKSPWS 1070
+ +P + ++ E Y ++ +EI + L G+IR SK+ +
Sbjct: 390 TEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINA 449
Query: 1071 CIGFYVLNASELERGALRLVINYKPLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKS 1130
C +V + G LR+V++YKPLNK +K YPLP L+ ++ TIF+K D+KS
Sbjct: 450 CPVMFVPK----KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505
Query: 1131 GYYQISVREEDRYKTAFVVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIV-YL 1189
Y+ I VR+ D +K AF P G +E+ VMP G+ AP+ +Q +N I +V Y+
Sbjct: 506 AYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYM 565
Query: 1190 DDVLVFSKGIDQHVQHLEKFIEIIKKNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQR 1249
D++L+ SK +HV+H++ ++ +K L+++ K + +++ +F+GY I + TP Q
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
Query: 1250 SLEFAKKFPDELKEKTQLQRFLGCVNYVADFIPNIRIVCAPLFKRLRKNSP-PWSEEMSH 1308
+++ ++ + K + +L++FLG VNY+ FIP + PL L+K+ W+ +
Sbjct: 626 NIDKVLQW-KQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 1309 SVREVKKLVQSLPIVTPF 1326
++ +K+ + S P++ F
Sbjct: 685 AIENIKQCLVSPPVLRHF 702
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 167 bits (424), Expect = 3e-40
Identities = 96/285 (33%), Positives = 157/285 (54%), Gaps = 5/285 (1%)
Query: 1043 EQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELE-RGALRLVINYKPLNKVLK 1101
+ Y + +I + LN+G+IR S SP++ + V + + R+VI+Y+ LN++
Sbjct: 217 QAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITV 276
Query: 1102 WIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHYEWNVMPQ 1161
R+P+PN +++ +L + F+ D+ G++QI + E KTAF GHYE+ MP
Sbjct: 277 GDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPF 336
Query: 1162 GLKNAPSEYQNIMNDIFYPYMN-FTIVYLDDVLVFSKGIDQHVQHLEKFIEIIKKNGLVV 1220
GLKNAP+ +Q MNDI P +N +VYLDD++VFS +D+H+Q L E + K L +
Sbjct: 337 GLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKL 396
Query: 1221 SAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCVNYVADF 1280
K + + +T FLG+ + I P +E +K+P K K +++ FLG Y F
Sbjct: 397 QLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPK-EIKAFLGLTGYYRKF 455
Query: 1281 IPNIRIVCAPLFKRLRKNS--PPWSEEMSHSVREVKKLVQSLPIV 1323
IPN + P+ K L+KN + E + +++K L+ PI+
Sbjct: 456 IPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPIL 500
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 154 bits (389), Expect = 3e-36
Identities = 102/306 (33%), Positives = 165/306 (53%), Gaps = 20/306 (6%)
Query: 1031 DIPTKARPIQ-MNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELE------ 1083
DI RPI+ + + +I L +IR S+S F V + +E++
Sbjct: 1399 DIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKE 1458
Query: 1084 -RGALRLVINYKPLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDR 1142
+G R+V NYK LN+ + +Y LP +I ++ + I+SKFD+KSG++Q+++ EE
Sbjct: 1459 KKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESV 1518
Query: 1143 YKTAFVVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGIDQH 1202
TAF+ YEW VMP GLKNAP+ +Q M+++F F VY+DD+LVFS+ +QH
Sbjct: 1519 PWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKGTEKFIAVYIDDILVFSETAEQH 1578
Query: 1203 VQHLEKFIEIIKKNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDE-L 1261
QHL +++ K+NGL++S KMKI + FLG + +I + F DE L
Sbjct: 1579 SQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKL 1638
Query: 1262 KEKTQLQRFLGCVNYVADFIPNIRIVCAPLFKRL------RKNSPPWSEEMSHSVREVKK 1315
++ +LG ++Y ++I +I + PL +++ R N W VR++K+
Sbjct: 1639 ATPEGMRSWLGILSYARNYIQDIGKLVQPLRQKMAPTGDKRMNPETWK-----MVRQIKE 1693
Query: 1316 LVQSLP 1321
V++LP
Sbjct: 1694 KVKNLP 1699
Score = 45.1 bits (105), Expect = 0.003
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 785 DKMEDSPLRDEFLQQLNLLVKKEETLKKDISPPINSMNEIFNRFRPKPTITLSDLQE--- 841
D++E L + Q+ L K+ E L++++ +E + K + S +QE
Sbjct: 1076 DEIEGEFLISQLQQENQRLQKQVERLQEELMKLHREKDEAL-KHSEKASRVFSTIQESDE 1134
Query: 842 -EVKILKEEINQLKQNDLSLEFRLIELAGIKIIESQETLASASGIKQIPDKKNEDNNSQE 900
E+ ++KEE+ Q K+ + +L I++ ++T+ + + +K E+ S
Sbjct: 1135 AELNLIKEELRQFKEET---RMAIAQLKEAIIVQEEDTIEERCAMI-LEEKHTENIYSAT 1190
Query: 901 PNENYLNLLNLVITHKWHSEITLVINDFRINIVALIDSGADINCIQEGLIPTQFYEKTKE 960
Y L N+ + K + IN A++D+GA IQ IP +YE K
Sbjct: 1191 AKAEYNGLYNVKVGIKPDNMEPYYIN-------AIVDTGATACLIQISAIPENYYEDAKV 1243
Query: 961 GVN 963
VN
Sbjct: 1244 TVN 1246
Score = 38.5 bits (88), Expect = 0.24
Identities = 35/136 (25%), Positives = 68/136 (49%), Gaps = 22/136 (16%)
Query: 638 QGYKKRKPFQKKPYEQNPSTQQPTNKKNVNP--------KKKNVCWKCGKPGHYANKCKT 689
+GY R +KK Y +T+ T K + N ++K C+ CG+ GHYAN+C+
Sbjct: 839 EGYYGRSG-EKKKYTARKATKY-TGKAHDNHIRVTKAKYQRKCKCYICGQEGHYANQCRN 896
Query: 690 QQKINELDLDQKLKDSLISVLINSEDPHYSSEYEYEGDEDQDINLV---EYSSDSHSSSE 746
+ K DQ+ + +++ L E+ S + E ++D+ +++ +Y ++ E
Sbjct: 897 KHK------DQQ-RVAILQSLDLKENEEVVSADDKEEEDDEIFSVLGEEDYQEETIMVLE 949
Query: 747 EE--RECVKDSSGFCD 760
E+ ++ +K+ S F D
Sbjct: 950 EDDIQQIIKEFSKFGD 965
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 149 bits (376), Expect = 9e-35
Identities = 86/253 (33%), Positives = 143/253 (55%), Gaps = 8/253 (3%)
Query: 1051 EEIGEYLNKGLIRHSKSPWSC----IGFYVLNASELERGALRLVINYKPLNKVLKWIRYP 1106
++I E L+ LI+ K+ +C F V N SE R+V NYK LN + +
Sbjct: 1201 KQIKELLDNKLIK--KADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFN 1258
Query: 1107 LPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHYEWNVMPQGLKNA 1166
+P+K +I + K IFSKFD+K+G++ + ++++ + T F G Y WNV P G+ NA
Sbjct: 1259 IPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANA 1318
Query: 1167 PSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGIDQHVQHLEKFIEIIKKNGLVVSAKKMK 1226
P +Q M + F + F ++Y+DD+L+ S +H++HL+ F +K+ G V+S KK K
Sbjct: 1319 PCAFQRFMQESFGD-LKFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSK 1377
Query: 1227 IFETKTRFLGYEIYQGQITPIQRSLEFAKKF-PDELKEKTQLQRFLGCVNYVADFIPNIR 1285
+F + +LG EI +G+I+ ++ KKF ++L LQ +LG +NY +I ++
Sbjct: 1378 MFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLS 1437
Query: 1286 IVCAPLFKRLRKN 1298
+ PL+K+ KN
Sbjct: 1438 KLVGPLYKKTGKN 1450
Score = 35.8 bits (81), Expect = 1.5
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 838 DLQEEVKILKEE--INQLKQNDLSLEFRL------IELAGIKIIESQETLASASGIKQIP 889
++ E K KEE I+ LK N +LEFR+ +E+ ++ + + S I +IP
Sbjct: 884 EVTEVKKPTKEETMIDDLKLNVKNLEFRVTILEHKVEMQNLQDKFETMQIRNKSEITEIP 943
Query: 890 DKKNEDNNSQEPNENYLNLLNLVITHKWHSEITLVINDFRINIVALIDSGADINCIQEGL 949
+ + NE+ ++ T + E + N+ I ALIDSG+ N I L
Sbjct: 944 TT----SLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALIDSGSTHNIICPTL 999
Query: 950 IPTQFYEKTKEGV--NSANGSKMNIQYKL 976
IP + T + + + SK N+ +L
Sbjct: 1000 IPASWINNTHREIIMFAVDNSKYNLNQEL 1028
Score = 33.9 bits (76), Expect = 5.8
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 2393 INFLKEEISYKNIEVQLQQPSVKSRIENILGNIQSSICSCKSSWSCAAFYVNKQAEIERG 2452
IN I Y + ++ + +K ++N L C ++ AAF V +E
Sbjct: 1182 INITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRT----AAFIVRNHSEEVAQ 1237
Query: 2453 TPRLVINYKPLNQALCWIRYPIPNK 2477
PR+V NYK LN + + IP+K
Sbjct: 1238 KPRIVYNYKRLNDNMHTDPFNIPHK 1262
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 147 bits (372), Expect = 3e-34
Identities = 85/276 (30%), Positives = 150/276 (53%), Gaps = 5/276 (1%)
Query: 1052 EIGEYLNKGLIRHSKSPWSCIGFYVLNASELE-RGALRLVINYKPLNKVLKWIRYPLPNK 1110
++ E LN+GLIR S SP++ + V + R+VI+Y+ LN++ RYP+PN
Sbjct: 225 QVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNM 284
Query: 1111 TDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHYEWNVMPQGLKNAPSEY 1170
+++ +L K F+ D+ G++QI + EE KTAF GHYE+ MP GL+NAP+ +
Sbjct: 285 DEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATF 344
Query: 1171 QNIMNDIFYPYMN-FTIVYLDDVLVFSKGIDQHVQHLEKFIEIIKKNGLVVSAKKMKIFE 1229
Q MN+I P +N +VYLDD+++FS + +H+ ++ + L + K + +
Sbjct: 345 QRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLK 404
Query: 1230 TKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCVNYVADFIPNIRIVCA 1289
+ FLG+ + I P ++ +P K+K +++ FLG Y FIPN +
Sbjct: 405 KEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDK-EIRAFLGLTGYYRKFIPNYADIAK 463
Query: 1290 PLFKRLRKNSPPWSEEMSH--SVREVKKLVQSLPIV 1323
P+ L+K + ++++ + + ++K L+ PI+
Sbjct: 464 PMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPIL 499
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 145 bits (366), Expect = 1e-33
Identities = 94/302 (31%), Positives = 165/302 (54%), Gaps = 11/302 (3%)
Query: 1026 EFNEKDIPTKARPIQMNEQYLKYCREEIGEYLNKGLIRHSKSPWSCIGFYVLNASELERG 1085
E E P + +P + R+ I + LN+ +IR SKSPWS V + + G
Sbjct: 935 ELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLV----KKKDG 990
Query: 1086 ALRLVINYKPLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKT 1145
++R+ I+Y+ +NKV+K +PLPN ++ L +++ FDM +G++QI + E+ + T
Sbjct: 991 SIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEIT 1050
Query: 1146 AFVVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMNF-TIVYLDDVLVFSKGIDQHVQ 1204
AF + +EWNV+P GL +P+ +Q M +I + VY+DD+L+ SK ++QH+Q
Sbjct: 1051 AFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQ 1110
Query: 1205 HLEKFIEIIKKNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSLEFAKKF--PDELK 1262
+++ + I+K+G+ + A K I + + +LG+++ + + + K+F P +K
Sbjct: 1111 DVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVK 1170
Query: 1263 EKTQLQRFLGCVNYVADFIPNIRIVCAPLFKRL-RKNSPPWSEEMSHSVREVKKLVQSLP 1321
E LQ FLG V Y FI N + + L + K + W +E + +E+KKLV P
Sbjct: 1171 E---LQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTP 1227
Query: 1322 IV 1323
++
Sbjct: 1228 VL 1229
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 125 bits (313), Expect = 2e-27
Identities = 76/266 (28%), Positives = 139/266 (51%), Gaps = 4/266 (1%)
Query: 1048 YCREEIGEYLNKGLIRHSKSPWSCIGFYV--LNASELERGALRLVINYKPLNKVLKWIRY 1105
+ E+ + L G+IR S+SP++ + V RLVI+++ LN+ RY
Sbjct: 196 FVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRY 255
Query: 1106 PLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHYEWNVMPQGLKN 1165
P+P+ ++ L K F+ D+KSGY+QI + E DR KT+F V G YE+ +P GL+N
Sbjct: 256 PMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRN 315
Query: 1166 APSEYQNIMNDIFYPYM-NFTIVYLDDVLVFSKGIDQHVQHLEKFIEIIKKNGLVVSAKK 1224
A S +Q ++D+ + VY+DDV++FS+ HV+H++ ++ + + VS +K
Sbjct: 316 ASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEK 375
Query: 1225 MKIFETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCVNYVADFIPNI 1284
+ F+ +LG+ + + ++ +++P E +++ FLG +Y FI +
Sbjct: 376 TRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYP-EPDCVYKVRSFLGLASYYRVFIKDF 434
Query: 1285 RIVCAPLFKRLRKNSPPWSEEMSHSV 1310
+ P+ L+ + S+ MS +
Sbjct: 435 AAIARPITDILKGENGSVSKHMSKKI 460
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 124 bits (310), Expect = 4e-27
Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 5/243 (2%)
Query: 1052 EIGEYLNKGLIRHSKSPWSCIGFYVLNASELERGA--LRLVINYKPLNKVLKWIRYPLPN 1109
+I E L G+IR S SP++ +++ G R+V+++K LN V YP+P+
Sbjct: 142 QIDELLQDGIIRPSNSPYNS-PIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPD 200
Query: 1110 KTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAFVVPFGHYEWNVMPQGLKNAPSE 1169
+ L F+ D+ SG++QI ++E D KTAF G YE+ +P GLKNAP+
Sbjct: 201 INATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAI 260
Query: 1170 YQNIMNDIFYPYM-NFTIVYLDDVLVFSKGIDQHVQHLEKFIEIIKKNGLVVSAKKMKIF 1228
+Q +++DI ++ VY+DD++VFS+ D H ++L + + K L V+ +K
Sbjct: 261 FQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFL 320
Query: 1229 ETKTRFLGYEIYQGQITPIQRSLEFAKKFPDELKEKTQLQRFLGCVNYVADFIPNIRIVC 1288
+T+ FLGY + I + + + P K +L+RFLG +Y FI + V
Sbjct: 321 DTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVK-ELKRFLGMTSYYRKFIQDYAKVA 379
Query: 1289 APL 1291
PL
Sbjct: 380 KPL 382
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 106 bits (265), Expect = 7e-22
Identities = 51/125 (40%), Positives = 83/125 (65%), Gaps = 4/125 (3%)
Query: 1086 ALRLVINYKPLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKT 1145
+LR+ I+Y+ L KV +YP+P DL RL + T F+K D++SGY+Q+ + + D KT
Sbjct: 5 SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64
Query: 1146 AFVVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYM-NFTIVYLDDVLV---FSKGIDQ 1201
V +G +E+ VMP GL NA + + N+MN++ Y Y+ +F +VYLDD++V +S + +
Sbjct: 65 TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124
Query: 1202 HVQHL 1206
H++HL
Sbjct: 125 HIKHL 129
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 96.7 bits (239), Expect = 7e-19
Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 19/239 (7%)
Query: 1085 GALRLVINYKPLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYK 1144
G R+V++Y+ +NK + I + ++ +++G + D+ +G++ + E +
Sbjct: 222 GKWRMVLDYREVNKTIPLIAAQNQHSAGILSSIYRGKYKTTLDLTNGFWAHPITPESYWL 281
Query: 1145 TAFVVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTIVYLDDVLVFSKGIDQHVQ 1204
TAF Y W +PQG N+P+ + + D+ N Y+DD+ + +H++
Sbjct: 282 TAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIPNVQ-AYVDDIYISHDDPQEHLE 340
Query: 1205 HLEKFIEIIKKNGLVVSAKKMKIFETKTRFLGYEIYQGQITPIQRSL--EFAKKF----- 1257
LEK I+ G VVS KK +I + + FLG+ IT R L F +K
Sbjct: 341 QLEKIFSILLNAGYVVSLKKSEIAQREVEFLGF-----NITKEGRGLTDTFKQKLLNITP 395
Query: 1258 PDELKEKTQLQRFLGCVNYVADFIPNIRIVCAPLFKRLRKNSP---PWSEEMSHSVREV 1313
P +LK QLQ LG +N+ +FIPN + PL+ + + W+E+ S+ ++ +
Sbjct: 396 PKDLK---QLQSILGLLNFARNFIPNYSELVKPLYTIVANANGKFISWTEDNSNQLQHI 451
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 280,176,727
Number of Sequences: 164201
Number of extensions: 12152853
Number of successful extensions: 35371
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 34852
Number of HSP's gapped (non-prelim): 452
length of query: 2478
length of database: 59,974,054
effective HSP length: 127
effective length of query: 2351
effective length of database: 39,120,527
effective search space: 91972358977
effective search space used: 91972358977
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0283.1