BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0281a.3
(1430 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 228 1e-58
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 223 4e-57
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 223 4e-57
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 223 4e-57
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 192 6e-48
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 182 7e-45
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 171 1e-41
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 166 6e-40
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 148 9e-35
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 140 3e-32
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 140 3e-32
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 139 4e-32
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 137 2e-31
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 136 4e-31
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 129 7e-29
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 124 2e-27
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 119 5e-26
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 111 1e-23
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 110 4e-23
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 107 3e-22
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 228 bits (580), Expect = 1e-58
Identities = 245/921 (26%), Positives = 396/921 (42%), Gaps = 126/921 (13%)
Query: 452 EIITGVLLQFDTVFQDPQGLPPRRRHDHAIHLKEGAQVP-NLRPYKCPHYQKNEVEKLVA 510
EI+ +L +F +F+ P A ++ Q P + Y P + EVE+ +
Sbjct: 86 EILNSLLGEFPRIFEPPLSGMSVETAVKA-EIRTNTQDPIYAKSYPYPVNMRGEVERQID 144
Query: 511 EMLEAGVIRPSISPFSSPIILVKKK-----DGGWRLCVDYRALNKVTIPNKFPIPIIEEL 565
E+L+ G+IRPS SP++SPI +V KK + +R+ VD++ LN VTIP+ +PIP I
Sbjct: 145 ELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINAT 204
Query: 566 LDELGGAKVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSL 625
L LG AK F+ LDL SG+HQI MK++DI KTAF T G YEFL +PFGL NAP+ FQ +
Sbjct: 205 LASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRM 264
Query: 626 MNEVLKPYLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSL 685
++++L+ ++ K V+ DDI+V+S D TH +L+ VL L+ L+ N +K F T +
Sbjct: 265 IDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQV 324
Query: 686 EYLGHIVSGEGGGC*PIKGGSYEGLANP------*RYQGNEGVPR---FDWL-----L*T 731
E+LG+IV+ +G P K + + P R+ G R D+ L
Sbjct: 325 EFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTN 384
Query: 732 LCQGLWENCKTLD*PSEERWVQLDRISNCSF*AFKN--SHG*LASVSC--ARFYKTICG* 787
L +GL+ N K+ S + + LD + SF K+ + + C F+ T
Sbjct: 385 LTRGLYANIKSSQ--SSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDAS 442
Query: 788 D*CLQQRAWSCLDARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFI 847
+ + R + +A+ S+ L+ ++ + E+E++A++ ++ R YL G I
Sbjct: 443 NWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTI 502
Query: 848 -VRTDQKSLKFLTDQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSR-KMMYSAL 905
V TD + L F R F+ +W ++ + E+ YKPG N VADALSR + L
Sbjct: 503 KVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPPQLNQL 562
Query: 906 SILTSAEKED-------WNSELQQDSKL-------VKVIQDLLISPTSHPGFEFKKGLLY 951
S A ED +S L S+L + V ++ LI T+ + +
Sbjct: 563 STDLDANPEDDMQSLATAHSALHDSSRLIPHVESPINVFKNQLIFDTTRSKYLCEHPFPG 622
Query: 952 YKNRLV------LSKASNRIPMIISECHDTPTGGHSGHFRTYKRI--ASFLYW-----EG 998
Y L+ L+ +N + + H + ++ I A+FL + +
Sbjct: 623 YTRHLIPLKDGSLADLTNSLQSCLRPVIINGVKIPEAHLQRFQSICLANFLLYKIRITQR 682
Query: 999 MKTDIKNFVEDCEI-----------------------------------------CQRSK 1017
+ D+ E CEI C+ K
Sbjct: 683 LVADVSGAEEICEIIEKEHRRAHRGPTEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYK 742
Query: 1018 YSTLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPY 1077
Y LQP PIP + +D K L +D+ +KFA + L
Sbjct: 743 YERHPNKPNLQPTPIPNYPCEILHIDIF-----ALEKRLYLSCIDKFSKFAKLFHL---- 793
Query: 1078 SAKDVAVLFIKELV--KLHGF--PTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQ 1133
+ A + ++E + LH F P +VSD + L + L + + +
Sbjct: 794 --QSKASVHLRETLVEALHYFTAPKVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSE 851
Query: 1134 TDGQTEVTNRCLETYLRCFVGPKPK-QWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDP 1192
+GQ E + RC P + ++ + A +NT+ +S P + R
Sbjct: 852 VNGQVERFHSTFLEIYRCLKDELPTFKPVELVHIAVDRYNTSVHSVTNRKPADVFFDRS- 910
Query: 1193 PLLLKAGAIPSRVEEVNQLFQQRDGVLGELKQNLLKAQHQMKVQADKHR-RLVEFNEGDW 1251
SRV L R L ++K + Q + + +K+R + GD
Sbjct: 911 ----------SRV-NYQGLTDFRRQTLEDIKGLIEYKQIRGNMARNKNRDEPKSYGPGDE 959
Query: 1252 VYLKLQPYKLKSIATRPCAKL 1272
V++ + K K A C K+
Sbjct: 960 VFVANKQIKTKEKARFRCEKV 980
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 223 bits (567), Expect = 4e-57
Identities = 157/537 (29%), Positives = 262/537 (48%), Gaps = 33/537 (6%)
Query: 800 DARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMG--RHFIVRTDQKSL-- 855
D + + ++S +S + SV ++E++A++++++ WRHYL F + TD ++L
Sbjct: 729 DDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIG 788
Query: 856 KFLTDQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKM--------------- 900
+ + + +W + L +FEI Y+PGS N +ADALSR +
Sbjct: 789 RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSI 848
Query: 901 -MYSALSILTSAEKEDWNSELQQDSKLVKVIQDLLISPTSHPGFEFKKGLLYY-KNRLVL 958
+ +SI T K +E D+KL+ ++ + + K GLL K++++L
Sbjct: 849 NFVNQISI-TDDFKNQVVTEYTNDTKLLNLLNNE--DKRVEENIQLKDGLLINSKDQILL 905
Query: 959 SKASNRIPMIISECHDTPTGGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKY 1018
+ II + H+ H G I W+G++ I+ +V++C CQ +K
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 1019 STLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYS 1078
P G LQP+P + W +SMDF+ LP+ G + + VVVDR +K A +
Sbjct: 966 RNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSIT 1025
Query: 1079 AKDVAVLFIKELVKLHGFPTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQT 1138
A+ A +F + ++ G P I++D D +F S WK+ +K S Y PQTDGQT
Sbjct: 1026 AEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQT 1085
Query: 1139 EVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKA 1198
E TN+ +E LRC P W+D + + +N +S+ M+PF+ ++ P L
Sbjct: 1086 ERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP--ALSP 1143
Query: 1199 GAIPSRVEEVNQLFQQRDGVLGELKQNLLKAQHQMKVQAD-KHRRLVEFNEGDWVYLKLQ 1257
+PS ++ ++ Q+ V +K++L +MK D K + + EF GD V +K
Sbjct: 1144 LELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-- 1201
Query: 1258 PYKLKSIATRPCAKLAPRFYGPYKILDRVGPVAYKLELPAHSK--IHPVFHVSLLKQ 1312
+ K+ KLAP F GP+ +L + GP Y+L+LP K FHVS L++
Sbjct: 1202 --RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256
Score = 155 bits (392), Expect = 7e-37
Identities = 88/253 (34%), Positives = 150/253 (58%), Gaps = 5/253 (1%)
Query: 446 KECEIPEIITGVLLQFDTVFQDPQGLP-PRRRHDHAIHL-KEGAQVPNLRPYKCPHYQKN 503
KE E+P+I + T + + LP P + + + L +E ++P +R Y P +
Sbjct: 370 KEPELPDIYKE--FKDITAETNTEKLPKPIKGLEFEVELTQENYRLP-IRNYPLPPGKMQ 426
Query: 504 EVEKLVAEMLEAGVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIE 563
+ + + L++G+IR S + + P++ V KK+G R+ VDY+ LNK PN +P+P+IE
Sbjct: 427 AMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIE 486
Query: 564 ELLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQ 623
+LL ++ G+ +F+KLDLKS YH IR++ D K AFR G +E+LVMP+G++ AP+ FQ
Sbjct: 487 QLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQ 546
Query: 624 SLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQT 683
+N +L + + D+IL++S H H++ VL L + L N+ KC F Q+
Sbjct: 547 YFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQS 606
Query: 684 SLEYLGHIVSGEG 696
++++G+ +S +G
Sbjct: 607 QVKFIGYHISEKG 619
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 223 bits (567), Expect = 4e-57
Identities = 157/537 (29%), Positives = 262/537 (48%), Gaps = 33/537 (6%)
Query: 800 DARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMG--RHFIVRTDQKSL-- 855
D + + ++S +S + SV ++E++A++++++ WRHYL F + TD ++L
Sbjct: 729 DDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIG 788
Query: 856 KFLTDQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKM--------------- 900
+ + + +W + L +FEI Y+PGS N +ADALSR +
Sbjct: 789 RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSI 848
Query: 901 -MYSALSILTSAEKEDWNSELQQDSKLVKVIQDLLISPTSHPGFEFKKGLLYY-KNRLVL 958
+ +SI T K +E D+KL+ ++ + + K GLL K++++L
Sbjct: 849 NFVNQISI-TDDFKNQVVTEYTNDTKLLNLLNNE--DKRVEENIQLKDGLLINSKDQILL 905
Query: 959 SKASNRIPMIISECHDTPTGGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKY 1018
+ II + H+ H G I W+G++ I+ +V++C CQ +K
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 1019 STLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYS 1078
P G LQP+P + W +SMDF+ LP+ G + + VVVDR +K A +
Sbjct: 966 RNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSIT 1025
Query: 1079 AKDVAVLFIKELVKLHGFPTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQT 1138
A+ A +F + ++ G P I++D D +F S WK+ +K S Y PQTDGQT
Sbjct: 1026 AEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQT 1085
Query: 1139 EVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKA 1198
E TN+ +E LRC P W+D + + +N +S+ M+PF+ ++ P L
Sbjct: 1086 ERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP--ALSP 1143
Query: 1199 GAIPSRVEEVNQLFQQRDGVLGELKQNLLKAQHQMKVQAD-KHRRLVEFNEGDWVYLKLQ 1257
+PS ++ ++ Q+ V +K++L +MK D K + + EF GD V +K
Sbjct: 1144 LELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-- 1201
Query: 1258 PYKLKSIATRPCAKLAPRFYGPYKILDRVGPVAYKLELPAHSK--IHPVFHVSLLKQ 1312
+ K+ KLAP F GP+ +L + GP Y+L+LP K FHVS L++
Sbjct: 1202 --RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256
Score = 155 bits (392), Expect = 7e-37
Identities = 88/253 (34%), Positives = 150/253 (58%), Gaps = 5/253 (1%)
Query: 446 KECEIPEIITGVLLQFDTVFQDPQGLP-PRRRHDHAIHL-KEGAQVPNLRPYKCPHYQKN 503
KE E+P+I + T + + LP P + + + L +E ++P +R Y P +
Sbjct: 370 KEPELPDIYKE--FKDITAETNTEKLPKPIKGLEFEVELTQENYRLP-IRNYPLPPGKMQ 426
Query: 504 EVEKLVAEMLEAGVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIE 563
+ + + L++G+IR S + + P++ V KK+G R+ VDY+ LNK PN +P+P+IE
Sbjct: 427 AMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIE 486
Query: 564 ELLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQ 623
+LL ++ G+ +F+KLDLKS YH IR++ D K AFR G +E+LVMP+G++ AP+ FQ
Sbjct: 487 QLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQ 546
Query: 624 SLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQT 683
+N +L + + D+IL++S H H++ VL L + L N+ KC F Q+
Sbjct: 547 YFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQS 606
Query: 684 SLEYLGHIVSGEG 696
++++G+ +S +G
Sbjct: 607 QVKFIGYHISEKG 619
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 223 bits (567), Expect = 4e-57
Identities = 157/537 (29%), Positives = 262/537 (48%), Gaps = 33/537 (6%)
Query: 800 DARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMG--RHFIVRTDQKSL-- 855
D + + ++S +S + SV ++E++A++++++ WRHYL F + TD ++L
Sbjct: 729 DDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIG 788
Query: 856 KFLTDQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKM--------------- 900
+ + + +W + L +FEI Y+PGS N +ADALSR +
Sbjct: 789 RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSI 848
Query: 901 -MYSALSILTSAEKEDWNSELQQDSKLVKVIQDLLISPTSHPGFEFKKGLLYY-KNRLVL 958
+ +SI T K +E D+KL+ ++ + + K GLL K++++L
Sbjct: 849 NFVNQISI-TDDFKNQVVTEYTNDTKLLNLLNNE--DKRVEENIQLKDGLLINSKDQILL 905
Query: 959 SKASNRIPMIISECHDTPTGGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKY 1018
+ II + H+ H G I W+G++ I+ +V++C CQ +K
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 1019 STLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYS 1078
P G LQP+P + W +SMDF+ LP+ G + + VVVDR +K A +
Sbjct: 966 RNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSIT 1025
Query: 1079 AKDVAVLFIKELVKLHGFPTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQT 1138
A+ A +F + ++ G P I++D D +F S WK+ +K S Y PQTDGQT
Sbjct: 1026 AEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQT 1085
Query: 1139 EVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKA 1198
E TN+ +E LRC P W+D + + +N +S+ M+PF+ ++ P L
Sbjct: 1086 ERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP--ALSP 1143
Query: 1199 GAIPSRVEEVNQLFQQRDGVLGELKQNLLKAQHQMKVQAD-KHRRLVEFNEGDWVYLKLQ 1257
+PS ++ ++ Q+ V +K++L +MK D K + + EF GD V +K
Sbjct: 1144 LELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-- 1201
Query: 1258 PYKLKSIATRPCAKLAPRFYGPYKILDRVGPVAYKLELPAHSK--IHPVFHVSLLKQ 1312
+ K+ KLAP F GP+ +L + GP Y+L+LP K FHVS L++
Sbjct: 1202 --RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256
Score = 158 bits (399), Expect = 1e-37
Identities = 89/253 (35%), Positives = 150/253 (59%), Gaps = 5/253 (1%)
Query: 446 KECEIPEIITGVLLQFDTVFQDPQGLP-PRRRHDHAIHL-KEGAQVPNLRPYKCPHYQKN 503
KE E+P+I + T + + LP P + + + L +E ++P +R Y P +
Sbjct: 370 KEPELPDIYKE--FKDITAETNTEKLPKPIKGLEFEVELTQENYRLP-IRNYPLPPGKMQ 426
Query: 504 EVEKLVAEMLEAGVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIE 563
+ + + L++G+IR S + + P++ V KK+G R+ VDY+ LNK PN +P+P+IE
Sbjct: 427 AMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIE 486
Query: 564 ELLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQ 623
+LL ++ G+ +F+KLDLKS YH IR++ D K AFR G +E+LVMP+G++ AP+ FQ
Sbjct: 487 QLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQ 546
Query: 624 SLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQT 683
+N +L + + DDIL++S H H++ VL L + L N+ KC F Q+
Sbjct: 547 YFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQS 606
Query: 684 SLEYLGHIVSGEG 696
++++G+ +S +G
Sbjct: 607 QVKFIGYHISEKG 619
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 192 bits (488), Expect = 6e-48
Identities = 99/216 (45%), Positives = 135/216 (61%), Gaps = 5/216 (2%)
Query: 493 RPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILVKKKDGG-----WRLCVDYRA 547
+ Y + EVE V EML G+IR S SP++SP +V KK +R+ +DYR
Sbjct: 210 KQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRK 269
Query: 548 LNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYE 607
LN++TIP+++PIP ++E+L +LG + F+ +DL G+HQI M + I KTAF T GHYE
Sbjct: 270 LNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYE 329
Query: 608 FLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLA 667
+L MPFGL NAP+TFQ MN +L+P L K LV+ DDI+++S L H +Q V T LA
Sbjct: 330 YLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLA 389
Query: 668 DHALKANRKKCSFGQTSLEYLGHIVSGEGGGC*PIK 703
D LK KC F + +LGHIV+ +G PIK
Sbjct: 390 DANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIK 425
Score = 75.9 bits (185), Expect = 8e-13
Identities = 51/156 (32%), Positives = 83/156 (52%), Gaps = 13/156 (8%)
Query: 799 LDARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFL 858
L G ++F S+ L+ + S E+EL+A+V A + +RHYL+GR F++ +D + L++L
Sbjct: 523 LSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWL 582
Query: 859 TDQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSALSILTSAEKEDWNS 918
+ + +W V+L F+I Y G EN+VADALSR + +E+ +S
Sbjct: 583 HNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKI-----------EENHHS 631
Query: 919 ELQQDSKLVKVIQDLLISPTSHPGFEFKKGLLYYKN 954
E Q S + LI T P FKK +++ K+
Sbjct: 632 EATQHS--AEEDNSNLIHLTEKPINYFKKQIIFIKS 665
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 182 bits (461), Expect = 7e-45
Identities = 94/223 (42%), Positives = 133/223 (59%), Gaps = 7/223 (3%)
Query: 479 HAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILVKKKDGG 538
H I+ K +P Y P + EVE + +ML G+IR S SP++SPI +V KK
Sbjct: 199 HTINTKHN--LPLYSKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDA 256
Query: 539 -----WRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDAD 593
+R+ +DYR LN++T+ ++ PIP ++E+L +LG F+ +DL G+HQI M
Sbjct: 257 SGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPES 316
Query: 594 IEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLL 653
+ KTAF T GHYE+L MPFGL NAP+TFQ MN++L+P L K LV+ DDI+V+S L
Sbjct: 317 VSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLD 376
Query: 654 THTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEG 696
H L V LA LK KC F + +LGH+++ +G
Sbjct: 377 EHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDG 419
Score = 80.9 bits (198), Expect = 2e-14
Identities = 49/123 (39%), Positives = 73/123 (58%), Gaps = 1/123 (0%)
Query: 799 LDARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFL 858
L G L++ S+ L+ + S E+EL+A+V A + +RHYL+GRHF + +D + L +L
Sbjct: 524 LSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWL 583
Query: 859 TDQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSR-KMMYSALSILTSAEKEDWN 917
+ + +W VKL DF+I+Y G EN VADALSR K+ + LS T E+ N
Sbjct: 584 YRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEEDN 643
Query: 918 SEL 920
S+L
Sbjct: 644 SDL 646
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 171 bits (433), Expect = 1e-41
Identities = 124/410 (30%), Positives = 208/410 (50%), Gaps = 40/410 (9%)
Query: 294 QIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQLGIM 353
++ +++ +LID A+ N+I + V++L + ++V G K KC +
Sbjct: 18 RLAGRTLKMLIDTDAAKNYI--RPVKELKNVMPVASPFSVSSIHG-STEIKHKC-----L 69
Query: 354 IQALEIVQNFYLF-GLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKGDPSL 412
++ + + F+L LN D ++G++ L G +K N + L + E PS+
Sbjct: 70 MKVFKHISPFFLLDSLNAFDAIIGLDLLTQAG-VKLNLAEDSLEYQGIAEKLHYFSCPSV 128
Query: 413 TKSELSYGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEIITGVLLQFDTVFQDPQGLP 472
++++ + + +E + ++ +K E T V TV +P
Sbjct: 129 NFTDVNDIVVPDSVKKEFKDTIIR---RKKAFSTTNEALPFNTAVTATIRTVDNEPV--- 182
Query: 473 PRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILV 532
+ A G + NEV++L L+ G+IRPS SP++SP +V
Sbjct: 183 ----YSRAYPTLMGVS----------DFVNNEVKQL----LKDGIIRPSRSPYNSPTWVV 224
Query: 533 KKK------DGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQ 586
KK + RL +D+R LN+ TIP+++P+P I +L LG AK F+ LDLKSGYHQ
Sbjct: 225 DKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQ 284
Query: 587 IRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDIL 646
I + + D EKT+F + G YEF +PFGL NA S FQ +++VL+ + K V+ DD++
Sbjct: 285 IYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVI 344
Query: 647 VYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEG 696
++S + H H+ VL L D ++ +++K F + S+EYLG IVS +G
Sbjct: 345 IFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDG 394
Score = 72.4 bits (176), Expect = 8e-12
Identities = 111/517 (21%), Positives = 202/517 (38%), Gaps = 86/517 (16%)
Query: 799 LDARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMG-RHFIVRTDQKSLKF 857
L G+ + S+ L Q+ + EREL+A+V A+ K +++L G R + TD + L F
Sbjct: 510 LSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTF 569
Query: 858 LTDQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRK--------------MMYS 903
R + +W + + ++ YKPG EN VADALSR+ ++S
Sbjct: 570 AVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLNALQNEPQSDAATIHS 629
Query: 904 ALSILTSAEKED-----WNSELQQDSKLVKVIQDLLI--SPTSH-PGFEFKKGLLYYKNR 955
LS+ + E D + +++ ++ + ++L++ S + H F K LL
Sbjct: 630 ELSLTYTVETTDKPLNCFRNQIILEAARFPLKRNLVLFRSKSRHLISFTDKSWLLKTLKE 689
Query: 956 LVLSKASNRI----PMIISECHDTPTGGHSGHFR-------------------------- 985
+V N I P + S HD + FR
Sbjct: 690 VVNPDVVNAIHCDLPTLASFQHDLIAHFPATQFRHCKNVVLDITDKNEQIEIVTAEHNRA 749
Query: 986 ------TYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMD 1039
K++ Y+ M + K V +C +C ++KY L PIP+
Sbjct: 750 HRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGETPIPSYTGEM 809
Query: 1040 ISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPT- 1098
+ +D + L +D+ +K YA+ P ++ + + L ++ FP
Sbjct: 810 VHIDIFS-----TDRKLFLTCIDKFSK----YAIVQPVVSRTIVDITAPLLQIINLFPNI 860
Query: 1099 -TIVSDRDPLFLSNFWKELFKMA-GTQLKLSTSYHPQTDGQTEVTNRCLETYLRCF-VGP 1155
T+ D +P F S + K + G + + H ++GQ E + L RC +
Sbjct: 861 KTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLDK 920
Query: 1156 KPKQWLDWLPWAEFWFNTNYNSSAGMSPFKALY--GRDPPLLLKAGAIPSRVEEV----- 1208
K ++ + A +N +S P + ++ + L +KA + ++ + +
Sbjct: 921 KTNDTVELILRATIEYNKTVHSVTRERPIEVVHPGAHERCLEIKARLVKAQQDSIGRNNP 980
Query: 1209 ---NQLFQQRDGVL----GELKQNLLKAQHQMKVQAD 1238
N++F+ + V L L + KVQAD
Sbjct: 981 SRQNRVFEVGERVFVKNNKRLGNKLTPLCTEQKVQAD 1017
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 166 bits (419), Expect = 6e-40
Identities = 93/244 (38%), Positives = 136/244 (55%), Gaps = 1/244 (0%)
Query: 454 ITGVLLQFDTVFQ-DPQGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEM 512
I V+ QF VF L + I LKEGA+ +P P K E+ K++ +M
Sbjct: 906 IWDVIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKM 965
Query: 513 LEAGVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGA 572
L VIR S SP+SSP++LVKKKDG R+C+DYR +NKV N P+P IE L L G
Sbjct: 966 LNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGK 1025
Query: 573 KVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKP 632
K+++ D+ +G+ QI + + E TAF +E+ V+PFGL +P+ FQ M E++
Sbjct: 1026 KLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGD 1085
Query: 633 YLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIV 692
L A V+ DD+L+ S D+ H +++ LT + +K KC + +EYLGH V
Sbjct: 1086 LLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKV 1145
Query: 693 SGEG 696
+ +G
Sbjct: 1146 TLDG 1149
Score = 106 bits (264), Expect = 5e-22
Identities = 126/543 (23%), Positives = 225/543 (41%), Gaps = 80/543 (14%)
Query: 800 DARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLT 859
D + +AF S+ LSP + + E +A++ A+++++ + G V TD K L L
Sbjct: 1265 DGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLL 1324
Query: 860 DQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSR----------KMMYSALSILT 909
+ ++W+++++ D +I Y G N VADALSR + SI+
Sbjct: 1325 KGSPLADRLWRWSIEILEFDVKIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVN 1384
Query: 910 SAEKE--------DWNSELQ-QDSKLVKVIQDLLISPTSHP----GFEFKKGLLYYK--- 953
+ + E W L+ +D +VI L T G E + L YYK
Sbjct: 1385 AIQTELPDILDSSCWLERLKGEDEGWKEVIAALEGGKTKGTFKIVGIESEISLEYYKIVG 1444
Query: 954 ----NRLVLSKASNRIPM-----IISECHDTPTGGHSGHFRTYKRIASFLYWEGMKTDIK 1004
N + ++ + +P ++ E H+ GH G + ++ + YW M+ ++
Sbjct: 1445 GVLKNTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVE 1504
Query: 1005 NFVEDCEIC----QRSKY-STLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGKDTVLV 1059
N V C C SK S+L P + PL I MD+ + V+G +L
Sbjct: 1505 NCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIVACDLMDVGL-------SVQGNRYILT 1557
Query: 1060 VVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHG-FPTTIVSDRDPLFLSNFWKELFK 1118
++D TK+ + A+ V F++ G P +++D+ F++ + +
Sbjct: 1558 IIDLFTKYGTAVPIPDK-KAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTH 1616
Query: 1119 MAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFNTNYNSS 1178
M + + Y+ + +G E N+ + ++ P +W D + +A + +N + +
Sbjct: 1617 MLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTA-VPMEWDDQVVYAVYAYNNCVHEN 1675
Query: 1179 AGMSPFKALYGRD--PPLLLKAGAIPSRVEEVNQLFQQRDGVLGELKQNLLKAQ-----H 1231
G +P ++GRD PL + S + V + D L Q LLK Q H
Sbjct: 1676 TGETPMFLMHGRDVMGPLEM------SGEDAVGINYADMDEYKHLLTQELLKVQKIAKEH 1729
Query: 1232 QMKVQ-----------ADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPY 1280
M+ Q A K R + G V L++ KL + C KL ++ GPY
Sbjct: 1730 AMREQESYKSLFDQKYASKKHRFPQ--PGSRVLLEIPSEKLGA----QCPKLVNKWSGPY 1783
Query: 1281 KIL 1283
+++
Sbjct: 1784 RVI 1786
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 148 bits (374), Expect = 9e-35
Identities = 75/208 (36%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 495 YKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILVKKKDGG------WRLCVDYRAL 548
Y+ PH Q E++ V ++++ ++ PS+S ++SP++LV KK WRL +DYR +
Sbjct: 320 YRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQI 379
Query: 549 NKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEF 608
NK + +KFP+P I+++LD+LG AK FS LDL SG+HQI + + + T+F T G Y F
Sbjct: 380 NKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRF 439
Query: 609 LVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLAD 668
+PFGL AP++FQ +M A ++ DD++V +L +V +
Sbjct: 440 TRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCRE 499
Query: 669 HALKANRKKCSFGQTSLEYLGHIVSGEG 696
+ LK + +KCSF + +LGH + +G
Sbjct: 500 YNLKLHPEKCSFFMHEVTFLGHKCTDKG 527
Score = 99.4 bits (246), Expect = 6e-20
Identities = 81/318 (25%), Positives = 145/318 (45%), Gaps = 25/318 (7%)
Query: 968 IISECHDTPT-GGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYS--TLAPG 1024
I+S HD P GGH+G +T ++ YW+ M IK +V C+ CQ++K + T P
Sbjct: 896 ILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPM 955
Query: 1025 GLLQPLPIPTQVWMDISMDFVGGLPKVR-GKDTVLVVVDRLTKFAHFYALGHPYSAKDVA 1083
+ + P + + +D +G LPK G + + ++ LTK+ + + SAK VA
Sbjct: 956 TITET---PEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANK-SAKTVA 1011
Query: 1084 VLFIKELVKLHGFPTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNR 1143
+ + +G T ++D + ++ +L K + ST++H QT G E ++R
Sbjct: 1012 KAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHR 1071
Query: 1144 CLETYLRCFVGPKPKQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPS 1203
L Y+R ++ W WL + + FNT + P++ ++GR L + S
Sbjct: 1072 TLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHS 1131
Query: 1204 -----RVEEVNQLFQQRDGVLGELKQNLLKA-QHQMKVQADKHRRLVEFNEGDWVYLKLQ 1257
+++ + + R V + LL+A + + K D + +E GD V L+ +
Sbjct: 1132 IEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLRNE 1191
Query: 1258 -----------PYKLKSI 1264
PYK++SI
Sbjct: 1192 VGHKLDFKYTGPYKIESI 1209
Score = 56.6 bits (135), Expect = 5e-07
Identities = 33/93 (35%), Positives = 53/93 (56%)
Query: 806 LAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS 865
+A+ S+ + +KS E+EL A+ AI +R Y+ G+HF V+TD + L +L S
Sbjct: 642 VAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPS 701
Query: 866 *DQFKWAVKLVGLDFEIQYKPGSENTVADALSR 898
+ ++L +F ++Y G +N VADALSR
Sbjct: 702 SKLTRIRLELEEYNFTVEYLKGKDNHVADALSR 734
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 140 bits (352), Expect = 3e-32
Identities = 77/214 (35%), Positives = 122/214 (56%), Gaps = 5/214 (2%)
Query: 480 AIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILV----KKK 535
+I L + ++ ++P K + E +K + E+L+ VI+PS SP +P LV +K+
Sbjct: 237 SIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKR 296
Query: 536 DGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIE 595
G R+ V+Y+A+NK TI + + +P +ELL + G K+FS D KSG+ Q+ +
Sbjct: 297 RGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRP 356
Query: 596 KTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTH 655
TAF +GHYE+ V+PFGL APS FQ M+E + + RKF V+ DDILV+S + H
Sbjct: 357 LTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDH 415
Query: 656 TTHLQQVLTLLADHALKANRKKCSFGQTSLEYLG 689
H+ +L H + ++KK + + +LG
Sbjct: 416 LLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 449
Score = 42.7 bits (99), Expect = 0.007
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 824 ERELMALVQAIQKWRHYLMGRHFIVRTDQK------SLKFLTDQRLFS*DQFKWAVKLVG 877
++E +A++ I+K+ YL HF++RTD +L + D +L +W L
Sbjct: 594 DKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGR--NIRWQAWLSH 651
Query: 878 LDFEIQYKPGSENTVADALSRK 899
F++++ G++N AD LSR+
Sbjct: 652 YSFDVEHIKGTDNHFADFLSRE 673
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 140 bits (352), Expect = 3e-32
Identities = 77/214 (35%), Positives = 122/214 (56%), Gaps = 5/214 (2%)
Query: 480 AIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILV----KKK 535
+I L + ++ ++P K + E +K + E+L+ VI+PS SP +P LV +K+
Sbjct: 237 SIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKR 296
Query: 536 DGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIE 595
G R+ V+Y+A+NK TI + + +P +ELL + G K+FS D KSG+ Q+ +
Sbjct: 297 RGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRP 356
Query: 596 KTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTH 655
TAF +GHYE+ V+PFGL APS FQ M+E + + RKF V+ DDILV+S + H
Sbjct: 357 LTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDH 415
Query: 656 TTHLQQVLTLLADHALKANRKKCSFGQTSLEYLG 689
H+ +L H + ++KK + + +LG
Sbjct: 416 LLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 449
Score = 42.7 bits (99), Expect = 0.007
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 824 ERELMALVQAIQKWRHYLMGRHFIVRTDQK------SLKFLTDQRLFS*DQFKWAVKLVG 877
++E +A++ I+K+ YL HF++RTD +L + D +L +W L
Sbjct: 594 DKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGR--NIRWQAWLSH 651
Query: 878 LDFEIQYKPGSENTVADALSRK 899
F++++ G++N AD LSR+
Sbjct: 652 YSFDVEHIKGTDNHFADFLSRE 673
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 139 bits (351), Expect = 4e-32
Identities = 76/214 (35%), Positives = 122/214 (56%), Gaps = 5/214 (2%)
Query: 480 AIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILV----KKK 535
+I L + ++ ++P K + E +K + E+L+ VI+PS SP +P LV +K+
Sbjct: 237 SIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKR 296
Query: 536 DGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIE 595
G R+ V+Y+A+NK T+ + + +P +ELL + G K+FS D KSG+ Q+ +
Sbjct: 297 RGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRP 356
Query: 596 KTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTH 655
TAF +GHYE+ V+PFGL APS FQ M+E + + RKF V+ DDILV+S + H
Sbjct: 357 LTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDH 415
Query: 656 TTHLQQVLTLLADHALKANRKKCSFGQTSLEYLG 689
H+ +L H + ++KK + + +LG
Sbjct: 416 LLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 449
Score = 42.7 bits (99), Expect = 0.007
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 824 ERELMALVQAIQKWRHYLMGRHFIVRTDQK------SLKFLTDQRLFS*DQFKWAVKLVG 877
++E +A++ I+K+ YL HF++RTD +L + D +L +W L
Sbjct: 594 DKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGR--NIRWQAWLSH 651
Query: 878 LDFEIQYKPGSENTVADALSRK 899
F++++ G++N AD LSR+
Sbjct: 652 YSFDVEHIKGTDNHFADFLSRE 673
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 137 bits (346), Expect = 2e-31
Identities = 76/214 (35%), Positives = 121/214 (56%), Gaps = 5/214 (2%)
Query: 480 AIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILV----KKK 535
+I L + ++ ++P K + E +K + E+L+ VI+PS SP +P LV +K+
Sbjct: 232 SIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKR 291
Query: 536 DGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIE 595
G R+ V+Y+A+NK T+ + + P +ELL + G K+FS D KSG+ Q+ +
Sbjct: 292 RGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRP 351
Query: 596 KTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTH 655
TAF +GHYE+ V+PFGL APS FQ M+E + + RKF V+ DDILV+S + H
Sbjct: 352 LTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDH 410
Query: 656 TTHLQQVLTLLADHALKANRKKCSFGQTSLEYLG 689
H+ +L H + ++KK + + +LG
Sbjct: 411 LLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 444
Score = 42.7 bits (99), Expect = 0.007
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 824 ERELMALVQAIQKWRHYLMGRHFIVRTDQK------SLKFLTDQRLFS*DQFKWAVKLVG 877
++E +A++ I+K+ YL HF++RTD +L + D +L +W L
Sbjct: 589 DKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGR--NIRWQAWLSH 646
Query: 878 LDFEIQYKPGSENTVADALSRK 899
F++++ G++N AD LSR+
Sbjct: 647 YSFDVEHIKGTDNHFADFLSRE 668
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 136 bits (343), Expect = 4e-31
Identities = 74/214 (34%), Positives = 120/214 (55%), Gaps = 5/214 (2%)
Query: 480 AIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILVKKKD--- 536
+I L + ++ ++P K + E +K + E+L+ VI+PS SP +P LV +
Sbjct: 238 SIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENG 297
Query: 537 -GGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIE 595
G R+ V+Y+A+NK T+ + + +P +ELL + G K+FS D KSG+ Q+ +
Sbjct: 298 RGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRP 357
Query: 596 KTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTH 655
TAF +GHYE+ V+PFGL APS FQ M+E + + RKF V+ DDI+V+S + H
Sbjct: 358 LTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDIVVFSNNEEDH 416
Query: 656 TTHLQQVLTLLADHALKANRKKCSFGQTSLEYLG 689
H+ +L H + ++KK + + +LG
Sbjct: 417 LLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 450
Score = 42.7 bits (99), Expect = 0.007
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 824 ERELMALVQAIQKWRHYLMGRHFIVRTDQK------SLKFLTDQRLFS*DQFKWAVKLVG 877
++E +A++ I+K+ YL HF++RTD +L + D +L +W L
Sbjct: 595 DKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGR--NIRWQAWLSH 652
Query: 878 LDFEIQYKPGSENTVADALSRK 899
F++++ G++N AD LSR+
Sbjct: 653 YSFDVEHIKGTDNHFADFLSRE 674
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 129 bits (323), Expect = 7e-29
Identities = 67/126 (53%), Positives = 85/126 (67%), Gaps = 3/126 (2%)
Query: 540 RLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTAF 599
R+C+DYRAL KVTI NK+PIP +++L D L A F+KLDL+SGY Q+R+ D KT
Sbjct: 7 RMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTC 66
Query: 600 RTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILV---YSPDLLTHT 656
T G +EF VMPFGLTNA +TF +LMN VL YL F +V+ DD++V YS L H
Sbjct: 67 VTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHI 126
Query: 657 THLQQV 662
HL+ V
Sbjct: 127 KHLRVV 132
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 124 bits (311), Expect = 2e-27
Identities = 71/214 (33%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 480 AIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILVK----KK 535
+I L + +V ++P + K + E+L+ G+I PS S SP LV+ ++
Sbjct: 230 SIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENEAERR 289
Query: 536 DGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIE 595
G R+ V+Y+A+N+ TI + +P ++ELL L G +FS D KSG+ Q+ + + +
Sbjct: 290 RGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQK 349
Query: 596 KTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTH 655
TAF +GH+++ V+PFGL APS FQ M L KF +V+ DDI+V+S L H
Sbjct: 350 LTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSNSELDH 408
Query: 656 TTHLQQVLTLLADHALKANRKKCSFGQTSLEYLG 689
H+ VL ++ + + ++KK + + + +LG
Sbjct: 409 YNHVYAVLKIVEKYGIILSKKKANLFKEKINFLG 442
Score = 38.5 bits (88), Expect = 0.13
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 824 ERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS*DQ----FKWAVKLVGLD 879
++EL+A+ Q I K+ YL F VRTD K+ + L + +W
Sbjct: 584 DKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQNWFSKYQ 643
Query: 880 FEIQYKPGSENTVADALSR 898
F++++ G +N +AD L+R
Sbjct: 644 FDVEHLEGVKNVLADCLTR 662
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 119 bits (299), Expect = 5e-26
Identities = 74/211 (35%), Positives = 114/211 (53%), Gaps = 17/211 (8%)
Query: 493 RPYKCPHYQKNEVEKLVAE---MLEAGVIRPSISPFSSPIILV-----------KKKDGG 538
RP K H + E + + +L+ VIRPS S S +V K+K G
Sbjct: 1405 RPIK--HVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGK 1462
Query: 539 WRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTA 598
R+ +Y+ LN+ T +++ +P I ++ ++G +K++SK DLKSG+ Q+ M++ + TA
Sbjct: 1463 ERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTA 1522
Query: 599 FRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTH 658
F YE+LVMPFGL NAP+ FQ M+ V K KF V+ DDILV+S H+ H
Sbjct: 1523 FLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAEQHSQH 1581
Query: 659 LQQVLTLLADHALKANRKKCSFGQTSLEYLG 689
L +L L ++ L + K G +++LG
Sbjct: 1582 LYTMLQLCKENGLILSPTKMKIGTPEIDFLG 1612
Score = 33.1 bits (74), Expect = 5.6
Identities = 24/90 (26%), Positives = 45/90 (49%), Gaps = 7/90 (7%)
Query: 820 KSVYERELMALVQAIQKWR-HYLMGRHFIVRTDQKSL-KFLTDQRLFS*DQFKWAVK--- 874
KS + E+ A + + K++ +YL + I+R+D +++ KF + +W
Sbjct: 1752 KSTIDAEIQAAIHGLDKFKIYYLDKKELIIRSDCEAIIKFYNKTNENKPSRVRWLTFSDF 1811
Query: 875 LVGLDFEIQYK--PGSENTVADALSRKMMY 902
L GL + ++ G N +ADALSR + +
Sbjct: 1812 LTGLGITVTFEHIDGKHNGLADALSRMINF 1841
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 111 bits (278), Expect = 1e-23
Identities = 75/225 (33%), Positives = 122/225 (53%), Gaps = 12/225 (5%)
Query: 481 IHLKEGAQ---VPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILVKK--- 534
I LK+ Q V N PY Q E ++ ++L+ G+IR S SP S+P V+
Sbjct: 194 IRLKDPLQEINVTNRIPYTIRDVQ--EFKEECEDLLKKGLIRESQSPHSAPAFYVENHNE 251
Query: 535 -KDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDAD 593
K G R+ ++Y+ +N+ TI + + +P + +L+++ G+ FS LD KSGY+Q+R+ +
Sbjct: 252 IKRGKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENT 311
Query: 594 IEKTAFR-THEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSP-D 651
TAF + HYE+ V+ FGL APS +Q M++ LK L L + DDIL+++
Sbjct: 312 KPLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKG-LEHICLAYIDDILIFTKGS 370
Query: 652 LLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEG 696
H ++ VL + + + ++KK Q +EYLG + G G
Sbjct: 371 KEQHVNDVRIVLQRIKEKGIIISKKKSKLIQQEIEYLGLKIQGNG 415
Score = 34.7 bits (78), Expect = 1.9
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 822 VYERELMALVQAIQKWRHYLMGRHFIVRTDQK------SLKFLTDQRLFS*DQFKWAVKL 875
+ E E++A V+ ++KWR L+ F++RTD K TD R + +W ++L
Sbjct: 604 IAELEVLAGVKVLEKWRIDLLQTRFLLRTDSKYFAGFCRYNIKTDYR--NGRLIRWQLRL 661
Query: 876 VGLDFEIQYKPGSENTVADALSRK 899
++ N AD L+R+
Sbjct: 662 QAYQPYVELIKSENNPFADTLTRE 685
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 110 bits (274), Expect = 4e-23
Identities = 74/255 (29%), Positives = 124/255 (48%), Gaps = 9/255 (3%)
Query: 966 PMIISECHDTPTGGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGG 1025
P II + H+ H+G T+ +++S +W ++ D+ + C+ C + +TLA
Sbjct: 819 PQIILQAHNI---AHTGRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCLVTNAATLAAPP 875
Query: 1026 LLQPLPIPTQVWMDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVL 1085
+L+P P + + +D++G LP G VLVVVD +T F Y P ++ V L
Sbjct: 876 ILRP-ERPVKPFDKFFIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKAL 934
Query: 1086 FIKELVKLHGFPTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCL 1145
+ + + P I SD+ F S + + K G QL+ ST YHPQ+ G+ E N +
Sbjct: 935 NMLTSIAV---PKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDI 991
Query: 1146 ETYLRCFVGPKPKQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRD--PPLLLKAGAIPS 1203
+ L + +P +W D LP + N +Y+ S+ +P + L+G D P S
Sbjct: 992 KRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTPFANSDTLDLS 1051
Query: 1204 RVEEVNQLFQQRDGV 1218
R EE++ L + R +
Sbjct: 1052 REEELSLLQEIRSSL 1066
Score = 82.0 bits (201), Expect = 1e-14
Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 20/256 (7%)
Query: 452 EIITGVLLQFDTVFQDPQGLPPRRR-HDHAIHLKEGAQVPN-LRPYKCPHYQKNEVEKLV 509
E + + L++D ++Q + RR H H+ G P + Y K ++ ++
Sbjct: 139 EKLQSLFLKYDALWQHWENQVGHRRIKPH--HIATGTVNPRPQKQYPINPKAKASIQTVI 196
Query: 510 AEMLEAGVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEE----- 564
++L+ GV+ S ++P+ V K DG WR+ +DYR +NK IP+I
Sbjct: 197 NDLLKQGVLIQQNSIMNTPVYPVPKPDGKWRMVLDYREVNKT-------IPLIAAQNQHS 249
Query: 565 --LLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTF 622
+L + K + LDL +G+ + TAF Y + +P G N+P+ F
Sbjct: 250 AGILSSIFRGKYKTTLDLSNGFWAHSITPESYWLTAFTWLGQQYCWTRLPQGFLNSPALF 309
Query: 623 QSLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQ 682
+ + ++LK V+ DDI + D H L++V +LL + + KK Q
Sbjct: 310 TADVVDLLKEVPN--VQVYVDDIYISHDDPREHLEQLEKVFSLLLNAGYVVSLKKSEIAQ 367
Query: 683 TSLEYLGHIVSGEGGG 698
+E+LG ++ EG G
Sbjct: 368 HEVEFLGFNITKEGRG 383
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 107 bits (266), Expect = 3e-22
Identities = 75/266 (28%), Positives = 128/266 (47%), Gaps = 11/266 (4%)
Query: 955 RLVLSKASNRIPMIISECHDTPTGGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQ 1014
R+V KA IIS H+ H+G T+ +++S +W ++ D+ + C+ C
Sbjct: 808 RIVPPKADRE--KIISTAHNI---AHTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCL 862
Query: 1015 RSKYSTLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALG 1074
+ + L +L+P+ P + + +D++G LP G VLVVVD +T F Y
Sbjct: 863 VTNATNLTSPPILRPVK-PLKPFDKFYIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTK 921
Query: 1075 HPYSAKDVAVLFIKELVKLHGFPTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQT 1134
P ++ V L + + + P + SD+ F S+ + + K G QL+ ST YHPQ+
Sbjct: 922 APSTSATVKALNMLTSIAI---PKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQS 978
Query: 1135 DGQTEVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRD--P 1192
G+ E N ++ L + +P +W D LP + N +Y+ S+ +P + L+G D
Sbjct: 979 SGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNT 1038
Query: 1193 PLLLKAGAIPSRVEEVNQLFQQRDGV 1218
P SR EE++ L + R +
Sbjct: 1039 PFANSDTLDLSREEELSLLQEIRSSL 1064
Score = 81.6 bits (200), Expect = 1e-14
Identities = 67/258 (25%), Positives = 117/258 (44%), Gaps = 18/258 (6%)
Query: 449 EIPEIITGVLLQFDTVFQDPQGLPPRRR-HDHAIHLKEGAQVPNLRPYKCPHYQKNEVEK 507
E E++ + L++D ++Q + RR H I A P + Y K ++
Sbjct: 134 EQKELLQKLFLKYDALWQHWENQVGHRRIKPHNIATGTLAPRPQ-KQYPINPKAKPSIQI 192
Query: 508 LVAEMLEAGVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEE--- 564
++ ++L+ GV+ S ++P+ V K DG WR+ +DYR +NK IP+I
Sbjct: 193 VIDDLLKQGVLIQQNSTMNTPVYPVPKPDGKWRMVLDYREVNKT-------IPLIAAQNQ 245
Query: 565 ----LLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPS 620
+L + K + LDL +G+ + TAF Y + +P G N+P+
Sbjct: 246 HSAGILSSIYRGKYKTTLDLTNGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPA 305
Query: 621 TFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSF 680
F + + ++LK A V DDI + D H L+++ ++L + + KK
Sbjct: 306 LFTADVVDLLKEIPNVQAYV--DDIYISHDDPQEHLEQLEKIFSILLNAGYVVSLKKSEI 363
Query: 681 GQTSLEYLGHIVSGEGGG 698
Q +E+LG ++ EG G
Sbjct: 364 AQREVEFLGFNITKEGRG 381
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,510,252
Number of Sequences: 164201
Number of extensions: 7636354
Number of successful extensions: 17296
Number of sequences better than 10.0: 157
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 16887
Number of HSP's gapped (non-prelim): 280
length of query: 1430
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1307
effective length of database: 39,777,331
effective search space: 51988971617
effective search space used: 51988971617
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0281a.3