BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0269b.9
(1085 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC... 1827 0.0
RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC... 1382 0.0
RPC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2... 1382 0.0
RPC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC... 1271 0.0
RPC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC... 1255 0.0
RPC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC... 1236 0.0
RPC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC... 1233 0.0
RPC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC... 1187 0.0
RPC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC... 1176 0.0
RPC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC... 1151 0.0
RPC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC... 1145 0.0
RPC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC... 681 0.0
RPC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC... 639 0.0
RPC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC... 630 e-180
RPC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC... 553 e-156
RPC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC... 545 e-154
RPC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC... 538 e-152
RPC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC... 415 e-115
RPC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC... 350 2e-95
RPC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC... 342 4e-93
>RPC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1332
Score = 1827 bits (4732), Expect = 0.0
Identities = 905/925 (97%), Positives = 909/925 (97%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHG+LV
Sbjct: 253 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGNLV 312
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 372
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 432
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL
Sbjct: 433 KEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 492
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII 458
KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII
Sbjct: 493 KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII 552
Query: 459 PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI 518
PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI
Sbjct: 553 PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI 612
Query: 519 FQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNK 578
FQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNK
Sbjct: 613 FQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNK 672
Query: 579 KSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQKKKT 638
KSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKK + KKKT
Sbjct: 673 KSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKT 732
Query: 639 NWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGN 698
NWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGN
Sbjct: 733 NWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGN 792
Query: 699 GKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSH 758
GKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSH
Sbjct: 793 GKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSH 852
Query: 759 ISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRS 818
ISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRS
Sbjct: 853 ISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRS 912
Query: 819 FIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYH 878
FIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYH
Sbjct: 913 FIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYH 972
Query: 879 LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP 938
LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP
Sbjct: 973 LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP 1032
Query: 939 NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI 998
NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI
Sbjct: 1033 NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI 1092
Query: 999 HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER 1058
HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER
Sbjct: 1093 HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER 1152
Query: 1059 ITGILGIPWSRKISMSRKLLQDNIS 1083
ITGILGIPW I + Q IS
Sbjct: 1153 ITGILGIPWRFLIGAELTIAQSRIS 1177
>RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1384
Score = 1382 bits (3577), Expect = 0.0
Identities = 702/956 (73%), Positives = 792/956 (82%), Gaps = 38/956 (3%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY GSRCI VRNQDIGIGLINRF QTQPI IRTPFTCRNTSWICRLCYG+SP HG LV
Sbjct: 257 IYRGSRCIAVRNQDIGIGLINRFKTLQTQPISIRTPFTCRNTSWICRLCYGQSPTHGHLV 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE VR+P NGKI+FNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRAPYNGKIQFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDLYVTIES DI+HNV IPPKSFLLVQN+QYVKSEQ+IAEIRAGTYT NL
Sbjct: 377 RHGHPAFLCYIDLYVTIESGDIIHNVTIPPKSFLLVQNNQYVKSEQVIAEIRAGTYTFNL 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKH++SD EGEMHWST++YH SEF YSNVHILPKTSHLWILSG S++S +VS S+
Sbjct: 437 KEKVRKHVYSDLEGEMHWSTDVYHASEFRYSNVHILPKTSHLWILSGKSYRSGSVSFSIR 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQM+ H L T +R+ N L S +VR + DHC
Sbjct: 497 KDQDQMNIHYLSTGERDFCNLLASKKKVRHKLFRFNPSDKKERRISDYSIFNQIISIDHC 556
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDGIIHKNSI 491
HF HPTI DT++LLAK+RRNR IIPF F+SI+ER+ ELM IS+EIPI+GI +NSI
Sbjct: 557 HFTHPTIFHDTTDLLAKRRRNRLIIPFQFQSIQERDKELMLASSISIEIPINGIFRRNSI 616
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKED-LIEYRGIREFKPKYQIKVDRFFFIPQE 550
LAYFDDPQYRTQSSGI KY+TIGI+SIF+KED LIEY+G++EFK KYQIKVD+FFFIP+E
Sbjct: 617 LAYFDDPQYRTQSSGITKYRTIGINSIFKKEDFLIEYQGVKEFKTKYQIKVDQFFFIPEE 676
Query: 551 VHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEI 610
VHIL ESSSIMVRNNSI+ V+T ITLN +SRV GLVR+EK KKKIELKIFSGDI+FPGE+
Sbjct: 677 VHILPESSSIMVRNNSIVEVDTLITLNIRSRVRGLVRLEKKKKKIELKIFSGDIYFPGEM 736
Query: 611 DKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSIN 670
DKIS+HSA+LIPP VKK +KK NW Y+QWIT TKKKYFVLVRPVILY+IAD IN
Sbjct: 737 DKISRHSAVLIPPRTVKKN--SKEKKMKNWIYVQWITITKKKYFVLVRPVILYEIADRIN 794
Query: 671 LVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSI 730
LVKLFPQD+F+E DNLELKV+N+IL GNGKSIRGI DTSIQLVRTCLVLNW++D+K SSI
Sbjct: 795 LVKLFPQDMFQERDNLELKVINYILSGNGKSIRGISDTSIQLVRTCLVLNWDQDKKFSSI 854
Query: 731 EEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSI 790
E A ASFVE+S GL+RYFLRIDLVKSHISYI KRNDPSS SD N+NPF+SI
Sbjct: 855 ENAHASFVEISIKGLVRYFLRIDLVKSHISYISKRNDPSSE---KKEGSDHTNMNPFYSI 911
Query: 791 Y---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEIN 847
Y K +Q+S +Q GT+R LL NKE + F+ILSSSNCFQ+ FN+ KY+NGIKE IN
Sbjct: 912 YIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFQIRSFNHGKYYNGIKEGIN 971
Query: 848 QFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYY 907
Q +R+ IPIK SLGPLG+APQ+A+ F FY LITHN+IS I KN QL+K KETFQV +YY
Sbjct: 972 QIQRDAMIPIKNSLGPLGIAPQVAH-FDFYRLITHNQISII-KNGQLDKLKETFQVFQYY 1029
Query: 908 LMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGP 967
+DENERIYKPDL +NIILNPF+LNW F+H NYCEKTF I+SLGQFICENVCIVQTKN P
Sbjct: 1030 FLDENERIYKPDLCSNIILNPFYLNWHFLHHNYCEKTFTIMSLGQFICENVCIVQTKNAP 1089
Query: 968 NLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQ 1027
+LKSGQ++TVQMD VGIR ANPYLATPGAT+HGHYGE+L EGDILVTFIYEKSRSGDITQ
Sbjct: 1090 HLKSGQILTVQMDSVGIRSANPYLATPGATVHGHYGEILSEGDILVTFIYEKSRSGDITQ 1149
Query: 1028 GLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
GLPKVEQVLEVRSIDSISMNLEKR+D WN RIT ILGIPW I + Q IS
Sbjct: 1150 GLPKVEQVLEVRSIDSISMNLEKRVDTWNGRITKILGIPWGFLIGAELTIAQSRIS 1205
>RPC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit) (Fragment)
Length = 1163
Score = 1382 bits (3576), Expect = 0.0
Identities = 708/956 (74%), Positives = 786/956 (82%), Gaps = 46/956 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRCIVVRNQDIGIGLINRFI FQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV
Sbjct: 49 IYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 108
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAEYVR+PSNGKIK NE+ +PTRT
Sbjct: 109 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKIKLNEDLVHPTRT 168
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHG+PAF+C IDLYVTIES+DI+HNVIIPPKSFLLVQNDQYVKSEQ+IAEIRAGTYT NL
Sbjct: 169 RHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVIAEIRAGTYTFNL 228
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RKHI+SDSEGEMHWST++YH SEF YSNVHILPKTSHLWILSG S +S+T+ L
Sbjct: 229 KERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGKSCRSNTIHFLLR 288
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQ++ SL K N SN L N+QV+ +C DH
Sbjct: 289 KDQDQITMDSLSNGKTNISNLLERNDQVKHKLFRFNTFGTKEKGISDYSIFNEIICTDHS 348
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIHKNSI 491
+ P I DT LAK+RRNRF+IPF F+SI+ER NE M +S+EIPI+GI H+NSI
Sbjct: 349 Y---PAIFHDTFYFLAKRRRNRFLIPFPFQSIQERKNERMSPSGVSIEIPINGIFHRNSI 405
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
AYFDDPQYR SSGI KY+TIGIHSIFQKED IEYRGI+E KPK QI+VDRFFFIP+EV
Sbjct: 406 FAYFDDPQYRRHSSGITKYRTIGIHSIFQKEDFIEYRGIKELKPKSQIQVDRFFFIPEEV 465
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL +SSS+MVRNNS++G+ TPIT N +SRVGGLVR++K KKKIELKIFSG+IHFPGE+D
Sbjct: 466 HILPKSSSLMVRNNSLVGIGTPITFNIRSRVGGLVRLDKKKKKIELKIFSGNIHFPGEMD 525
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+HSAILIPP VKKK KK NW Y+QWI TTKKKYFVLVRPVILY+I DS N
Sbjct: 526 KISRHSAILIPPGTVKKKKCNKSKKIKNWIYVQWIATTKKKYFVLVRPVILYEIPDSNNF 585
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
VKLFPQDLF+E DNLELKV+N+ILYGNGKSIRGI DT IQLVRTCLV NW++ + SSSIE
Sbjct: 586 VKLFPQDLFQEKDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVFNWDDGKNSSSIE 645
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
EA ASF+EV TNGLI YFLRIDLVKS+ SYIRKRN+PS GLI N+SDR INPFFSI+
Sbjct: 646 EAPASFIEVRTNGLIEYFLRIDLVKSNTSYIRKRNEPSGFGLIGDNKSDR--INPFFSIH 703
Query: 792 -KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEE-INQF 849
K IQQSLSQ HGTIRMLLNRNKE RS+IILSSSNCFQM PFNN K HNGIK++ I
Sbjct: 704 SKGKIQQSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQMRPFNNEKSHNGIKKDPIISI 763
Query: 850 KRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLM 909
N GPLG+A Q+ANF+S YHLITHN+IS I KNLQL+K E FQVIKYYLM
Sbjct: 764 NNN---------GPLGIALQVANFYSLYHLITHNQISII-KNLQLDKLTEIFQVIKYYLM 813
Query: 910 DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPN- 968
DEN++I KPDLY+NIILNPFHLNW F+H YCEKTF ISLGQFICEN+CI Q KN P+
Sbjct: 814 DENDKICKPDLYSNIILNPFHLNWFFLHHFYCEKTFTRISLGQFICENICIAQMKNRPHL 873
Query: 969 -LKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQ 1027
LKSGQVI VQMD V IR ANPYLATPGATIHGHYGE+L +GDILVTFIYEKSRSGDITQ
Sbjct: 874 KLKSGQVIIVQMDSVIIRSANPYLATPGATIHGHYGEILSQGDILVTFIYEKSRSGDITQ 933
Query: 1028 GLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
GLPKVEQ+LE+RSIDSISMNLEKRIDAWNE IT I+GIPW I + Q IS
Sbjct: 934 GLPKVEQILEIRSIDSISMNLEKRIDAWNECITKIIGIPWGFLIGAELTIAQSRIS 989
>RPC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1388
Score = 1271 bits (3288), Expect = 0.0
Identities = 650/957 (67%), Positives = 756/957 (78%), Gaps = 41/957 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 253 IYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 372
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+IAEIRAG TLN
Sbjct: 373 RHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVIAEIRAGISTLNF 432
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G +S V LS+
Sbjct: 433 KEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGRPCRSSLVYLSIH 492
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQM+ H L +R TSN V+N+Q R +C
Sbjct: 493 KDQDQMNAHFLSGKRRYTSNLSVTNDQARQKLFSSDFSGKKEDRIPDYSDLNRIICAGQY 552
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSI 491
+ ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+EIP++GI +NSI
Sbjct: 553 NLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIEIPVNGIFRRNSI 610
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
LAYFDDP+YR +SSGI KY T+ HS+ +KEDL+EYRG++EF+PKYQ+KVDRFFFIP+EV
Sbjct: 611 LAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQMKVDRFFFIPEEV 670
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE D
Sbjct: 671 HILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETD 730
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+H+ +LIPP K+ + KK NW Y+Q IT +KKK+FVLVRPV+ Y+I D INL
Sbjct: 731 KISRHTGVLIPPGTGKRN-SKESKKVKNWIYVQRITPSKKKFFVLVRPVVTYEITDGINL 789
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVLNWN+D+KSSS E
Sbjct: 790 ATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCE 849
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
EA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N SD NINPF SIY
Sbjct: 850 EARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIY 909
Query: 792 ---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQ 848
K IQQS++Q GTI LLNRNKE +S IILS++NC +MGPF +VKYH+ IK+ I
Sbjct: 910 SYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSI-- 967
Query: 849 FKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI--KY 906
K++ IPI+ SLGPLG + I NF+S YHLITHN+I + LQL+ K+TFQVI KY
Sbjct: 968 -KKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQI-LVTNYLQLDNLKQTFQVIKFKY 1025
Query: 907 YLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNG 966
YLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFICENVCI KNG
Sbjct: 1026 YLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCI--AKNG 1083
Query: 967 PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
P LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVTFIYEKSRSGDIT
Sbjct: 1084 PPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDIT 1143
Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
QGLPKVEQVLEVRS+DSISMNLEKRI+ WN+ IT ILGIPW I + Q IS
Sbjct: 1144 QGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRIS 1200
>RPC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1389
Score = 1255 bits (3247), Expect = 0.0
Identities = 650/957 (67%), Positives = 749/957 (77%), Gaps = 44/957 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 257 IYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+IAEIRAG TLN
Sbjct: 377 RHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVIAEIRAGISTLNF 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G KS V LS+
Sbjct: 437 KEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGGPCKSSLVYLSIH 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQM+ HSL +R TSN V+N+Q R +C
Sbjct: 497 KDQDQMNAHSLSGKQRYTSNLSVTNDQARQKLFSSGFSGKKEDRIPDYSDLNRIICTGQY 556
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSI 491
+ ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+EIP++GI +NSI
Sbjct: 557 NLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIEIPVNGIFRRNSI 614
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
LAYFDDP+YR +SSGI KY TI HS+ +KEDLIEYRG++EF+PKYQ+KVDRFFFIP+EV
Sbjct: 615 LAYFDDPRYRRKSSGIIKYGTIETHSVIKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEV 674
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE D
Sbjct: 675 HILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETD 734
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+H+ +LIPP K + KK W Y+Q IT +KKK+FVLVRPV+ Y+I D IN
Sbjct: 735 KISRHTGLLIPPGTGKIN-SKESKKVKKWIYVQRITPSKKKFFVLVRPVVTYEITDGINF 793
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVLNWN+D+KSSS E
Sbjct: 794 ETLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCE 853
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
EA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N SD NINPF SIY
Sbjct: 854 EARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIY 913
Query: 792 ---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQ 848
K IQQSL+Q GTI LLNRNKE +S IILSS+NC +MG +KYH+ IK+ I
Sbjct: 914 SYSKAKIQQSLNQPQGTIHTLLNRNKECQSLIILSSANCSRMG---TLKYHSVIKDSI-- 968
Query: 849 FKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI--KY 906
K++ IPI+ SLGPLG I NF+S Y LITHN+I + LQL+ K+TFQVI KY
Sbjct: 969 -KKDPLIPIRNSLGPLGTCLPIENFYSSYRLITHNQI-LVTNYLQLDNLKQTFQVIKFKY 1026
Query: 907 YLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNG 966
YLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFICENVCI KNG
Sbjct: 1027 YLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCI--AKNG 1084
Query: 967 PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
P LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVTFIYEKSRSGDIT
Sbjct: 1085 PPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDIT 1144
Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
QGLPKVEQVLEVRSIDSISMNLEKR++ WN+ IT ILGIPW I + Q IS
Sbjct: 1145 QGLPKVEQVLEVRSIDSISMNLEKRVEGWNKCITRILGIPWGFLIGAELTIAQSRIS 1201
>RPC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1361
Score = 1236 bits (3198), Expect = 0.0
Identities = 641/952 (67%), Positives = 743/952 (77%), Gaps = 47/952 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+GSRCI RNQDIG+GL+NRFI +TQ I IRTPFTCR+ SWICRLCYGRSP HG LV
Sbjct: 257 IYMGSRCIATRNQDIGVGLVNRFITLRTQLISIRTPFTCRSASWICRLCYGRSPTHGGLV 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKI+FNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIQFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDLYVTIES+DI+HNV IPPKSFLLVQNDQYV+SEQ+IAEIRAGT TLN
Sbjct: 377 RHGHPAFLCYIDLYVTIESDDILHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTLNF 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RKHI+SDSEGEMHWST++YH EF Y NVH+LPKTSHLW+LSG ++S V SL
Sbjct: 437 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGKPYRSSVVPFSLS 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQV-------------RLCP-------DHCHFMHP 438
KDQDQM+THSL + SN V+N+QV R+ HC+ ++P
Sbjct: 497 KDQDQMNTHSLSFEQIYISNPSVTNDQVKDKLSDSFSKKEDRITDYSELNRIGHCNLIYP 556
Query: 439 TISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDGIIHKNSILAYFD 496
+ D LLAKKRRNRFIIP F+ +ER ELM IS+EIPI+GI KNSI AYFD
Sbjct: 557 AKNLD---LLAKKRRNRFIIP--FQGSQERKKELMSLSGISIEIPINGIFRKNSIFAYFD 611
Query: 497 DPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSE 556
DP+YR +SSGI KY TI +HSI +KEDLIEYRG++EF+PKYQ+KVDRFFFIP+EVHIL+
Sbjct: 612 DPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHILAG 671
Query: 557 SSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQH 616
SSSIMVRNNSIIGV+T ITLN +SR+GG+VRVE+ KKKIEL IFSGDIHFPGE DKIS+H
Sbjct: 672 SSSIMVRNNSIIGVDTWITLNTRSRIGGVVRVERKKKKIELTIFSGDIHFPGETDKISRH 731
Query: 617 SAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFP 676
S ILIPP K +N KK W Y+Q IT TKKKYFVLVRPV+ Y+I D INL LFP
Sbjct: 732 SGILIPPSRKNSKDSKNLKK---WIYVQRITPTKKKYFVLVRPVVPYEITDGINLATLFP 788
Query: 677 QDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALAS 736
QDL +E DN++L+V+N+ILYGNGK RGI DTSIQLVRTCLVLNWN+D+K SSIEEA S
Sbjct: 789 QDLLQERDNVQLRVVNYILYGNGKVTRGISDTSIQLVRTCLVLNWNQDKKGSSIEEARGS 848
Query: 737 FVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY---KE 793
FVEV TNG+I+ FL+++LVK ISYI KRNDPSS SD N+NPF+SIY K
Sbjct: 849 FVEVRTNGMIQDFLKVNLVKPAISYISKRNDPSSE---KKEGSDHTNMNPFYSIYIYPKT 905
Query: 794 NIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNH 853
+Q+S +Q GT+R LL NKE + F+ILSSSNCF++GPF VKY + K++
Sbjct: 906 KLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFRIGPFKGVKYPKEL------IKKDP 959
Query: 854 KIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIK--YYLMDE 911
IPI+ S GPLG A QIANFFSFY+LITHN+I + LQL+ K+TFQ K YYLMDE
Sbjct: 960 LIPIRNSFGPLGTALQIANFFSFYYLITHNQI-LVTNYLQLDNLKQTFQPFKFQYYLMDE 1018
Query: 912 NERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKS 971
N RIY PD +NII NPF LNW F+H ++CE+T I LGQF+CENVCI TK G +LKS
Sbjct: 1019 NGRIYNPDPCSNIIFNPFKLNWYFLHYHFCEETSTKIDLGQFVCENVCI--TKKGTHLKS 1076
Query: 972 GQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPK 1031
GQV+ VQ D V IR A PYLATPGAT+HGHYGE++YEGD LVTFIYEKSRSGDITQGLPK
Sbjct: 1077 GQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPK 1136
Query: 1032 VEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
VEQVLEVRSIDSIS+NLEKRID+WNERIT ILG PW I + Q IS
Sbjct: 1137 VEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRIS 1188
>RPC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1377
Score = 1233 bits (3189), Expect = 0.0
Identities = 642/954 (67%), Positives = 746/954 (77%), Gaps = 40/954 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+G RCI RNQDIGIGL+NRFI F+ QPI+IRTPF CR+TSWICRLCYGRSP HGDLV
Sbjct: 256 IYMGPRCIAARNQDIGIGLVNRFITFRAQPIYIRTPFLCRSTSWICRLCYGRSPAHGDLV 315
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKI+FNE+ +PTRT
Sbjct: 316 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPFNGKIQFNEDLVHPTRT 375
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCY DLYVTIES+DI+HNV IP KSFLLVQNDQYV+SEQ+IAEIRAGT T NL
Sbjct: 376 RHGHPAFLCYTDLYVTIESHDILHNVNIPQKSFLLVQNDQYVESEQVIAEIRAGTSTFNL 435
Query: 339 --KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLS 396
KEK+RKHI+SDSEGEMHWST++YH E+ Y NVH+LPKTSHLWILSG +S V S
Sbjct: 436 KVKEKVRKHIYSDSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGLCRSSIVPFS 495
Query: 397 LLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR--------------LCPD----------- 431
L KDQDQM+ HSL +R S+ V+N +VR PD
Sbjct: 496 LHKDQDQMNVHSLSVEQRYISDLSVTNVRVRHKLFSSDSSGKKGGRAPDYSGPDRIISNG 555
Query: 432 HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKN 489
H +F++P I + S+LLAK+RRNRFIIP F+S +ER ELMP IS+EIPI+GI+ +N
Sbjct: 556 HWNFIYPAILHENSDLLAKRRRNRFIIP--FQSDQEREKELMPRSGISIEIPINGILRRN 613
Query: 490 SILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQ 549
SILAYFDDP+YR SSGI KY TIG+ SI +KEDLIEYR +EF+PKYQ+KVDRFFFIP+
Sbjct: 614 SILAYFDDPRYRRSSSGITKYGTIGVDSIVKKEDLIEYRRAKEFRPKYQMKVDRFFFIPE 673
Query: 550 EVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGE 609
EVHIL SS +MVRNNSIIGVNT I LN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE
Sbjct: 674 EVHILPASSPVMVRNNSIIGVNTRIALNTRSRVGGLVRVERKKKRIELKIFSGDIHFPGE 733
Query: 610 IDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSI 669
DKIS+HS ILIPP KK + + KK NW Y+Q IT TKKKYFVLVRPV+ Y+IAD I
Sbjct: 734 TDKISRHSGILIPPGTGKKNV-KESKKWKNWIYVQRITPTKKKYFVLVRPVVTYEIADGI 792
Query: 670 NLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSS 729
NL LFPQD +E DN++L+V+N+ILYGNGK IRGI TS+QLVRTCLVLNW++D ++ S
Sbjct: 793 NLETLFPQDPLQERDNVQLRVVNYILYGNGKPIRGISHTSLQLVRTCLVLNWDQD-RNGS 851
Query: 730 IEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFS 789
IEE ASFVEV NGLIR FL+IDLVKS I Y KRND +SSG I N SDR NINPF+
Sbjct: 852 IEEVHASFVEVRANGLIRDFLKIDLVKSPILYSGKRNDTTSSGFIPNNGSDRTNINPFY- 910
Query: 790 IYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQF 849
+K I QSL+Q GTIR LLNRNKE +SF+ILSSS+C ++G FN K H KE I
Sbjct: 911 -FKARI-QSLTQHQGTIRTLLNRNKECQSFLILSSSDCSRIGSFNGSKSHKVTKESIT-I 967
Query: 850 KRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLM 909
K + IPI+ SLGPLG P+IANF S Y+LITHN+I + K L L+ K+TFQV+KYYLM
Sbjct: 968 KEDPTIPIRNSLGPLGTVPKIANFDSSYYLITHNQI-LLNKYLSLDNLKQTFQVLKYYLM 1026
Query: 910 DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNL 969
DEN RIY PD +NII NPF LNW F+ +YCE+T II+ GQFICENVCI +K GP++
Sbjct: 1027 DENGRIYNPDPRSNIIFNPFDLNWCFLPHDYCEETSTIINPGQFICENVCI--SKYGPHI 1084
Query: 970 KSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGL 1029
KSGQ++ V++D + IR A P+LATPGAT+HGH GE+LYEGD LVTFIYEKSRSGDITQGL
Sbjct: 1085 KSGQILIVRVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQGL 1144
Query: 1030 PKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
PKVEQVLE RSIDSISMNLEKR++ WNERIT ILGIPW I + Q IS
Sbjct: 1145 PKVEQVLEARSIDSISMNLEKRVEGWNERITKILGIPWGFLIGAELTIAQSRIS 1198
>RPC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1376
Score = 1187 bits (3071), Expect = 0.0
Identities = 621/958 (64%), Positives = 734/958 (75%), Gaps = 50/958 (5%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRC+ RNQD+GIGL+NR I F TQ I IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 255 IYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLV 314
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKIKFNE+ +PTRT
Sbjct: 315 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPTRT 374
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ+IAEIR GTYT +
Sbjct: 375 RHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVIAEIREGTYTFHF 434
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RK+I+SDSEGEMHWST++ H EF YSNVH+LPKTSHLWILSG S S + S+
Sbjct: 435 KERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLIRFSIH 494
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQV-------------------------RLCPDHC 433
KDQDQM+ L +++ S+ V+N+QV L H
Sbjct: 495 KDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIYDYSELNGNLGTSHY 554
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIHKNSI 491
+ ++ I + S+LLAK+RRNRF+IP F+SI+E+ E +P ISVEIPI+GI +NSI
Sbjct: 555 NLIYSAIFHENSDLLAKRRRNRFLIP--FQSIQEQEKEFIPQSGISVEIPINGIFRRNSI 612
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
A+FDDP+YR +SSGI KY T+ SI QKED+IEYRG+++ K KY++KVDRFFFIP+EV
Sbjct: 613 FAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKYEMKVDRFFFIPEEV 672
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL ESS+IMV+N SIIGV+T +TLN +S+VGGL+RVEK KK+IELKIFSGDIHFP + D
Sbjct: 673 HILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIELKIFSGDIHFPDKTD 732
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+HS ILIPP KK + KK NW Y+Q IT TKKK+FVLVRPV Y+IADSINL
Sbjct: 733 KISRHSGILIPPGRGKKN-SKESKKFKNWIYVQRITPTKKKFFVLVRPVATYEIADSINL 791
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
LFPQDLF+E DN++L+V N+ILYGNGK RGI DTSIQLVRTCLVLNW +K+SS+E
Sbjct: 792 ATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNW---DKNSSLE 848
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
E A FVEVST GLI+ F+RI LVKSHISYIRKRN+ SGLIS + ++NPF+SI
Sbjct: 849 EVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISAD-----HMNPFYSIS 903
Query: 792 KEN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQF 849
++ +QQSL Q HGTIRM LNRNKE++S +ILSSSNCF+MGPFN+VK+HN I + I
Sbjct: 904 PKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKHHNVINQSI--- 960
Query: 850 KRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLM 909
K+N I IK S GPLG A I+NF+SF L+T+N+IS I K QL+ K FQ I YL+
Sbjct: 961 KKNTLITIKNSSGPLGTATPISNFYSFLPLLTYNQISLI-KYFQLDNLKYIFQKINSYLI 1019
Query: 910 DENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQFICENVCIVQTKN 965
DEN I D Y+N++LNPF LNW F+H NYCE+T IISLGQF CENVCI K
Sbjct: 1020 DENGIILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCENVCI--AKK 1077
Query: 966 GPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDI 1025
P+LKSGQV+ VQ D IR A PYLATPGA +HGHY E+LYEGD LVTFIYEKSRSGDI
Sbjct: 1078 EPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDI 1137
Query: 1026 TQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
TQGLPKVEQVLEVRSIDSIS+NLEKRI WN+ IT ILGIPW I ++Q IS
Sbjct: 1138 TQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRIS 1195
>RPC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1386
Score = 1176 bits (3042), Expect = 0.0
Identities = 612/963 (63%), Positives = 736/963 (75%), Gaps = 52/963 (5%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRCI +RNQDIGIGL+NRFI F QPI IRTPFT R+ SWICRLCYGRSP HGDLV
Sbjct: 251 IYIGSRCIAIRNQDIGIGLVNRFITFGIQPISIRTPFTGRSPSWICRLCYGRSPTHGDLV 310
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSA--YPT 276
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFN N A +P
Sbjct: 311 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNFNEALVHPA 370
Query: 277 RTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTL 336
RTRHGHPA LC +DL VTIES DI+HN+ IPPKSFLLVQN+QYV+SEQ+IAEI AGT T
Sbjct: 371 RTRHGHPALLCSMDLDVTIESEDILHNLTIPPKSFLLVQNNQYVESEQVIAEICAGTSTF 430
Query: 337 NLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLS 396
+ KE++RKHI+SDSEGEMHWST++YH EF YSNVH+LPKTSHLWILSG S +S S
Sbjct: 431 HFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCRSRGAPFS 490
Query: 397 LLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR---------------------------LC 429
L KDQDQM+ S +R S+ +N+Q+R +C
Sbjct: 491 LHKDQDQMNPRSTERERRYLSSLSANNDQIRYKFFSSSFSGKKKDDRESWFISEMNRIIC 550
Query: 430 PDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIH 487
HC+ ++P+I + S+LLAK+RRNR +IP +S +ER EL+P IS+E+PI+GI
Sbjct: 551 TLHCNLIYPSILRENSDLLAKRRRNRLVIPV--QSSQEREKELIPHSGISIELPINGIFR 608
Query: 488 KNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFI 547
K SILA+FDDP+YRT+SSGI +Y+T+G+HSI +KE L++YRGI EFKPKYQ+ +DRFFFI
Sbjct: 609 KKSILAFFDDPRYRTKSSGITQYETMGMHSIVKKEGLVDYRGINEFKPKYQMTIDRFFFI 668
Query: 548 PQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFP 607
P+EVHIL ESSSIMVRNNS+IGV+T I LN +SR GGLVRVE+ K+ I L+IFSG IHFP
Sbjct: 669 PEEVHILPESSSIMVRNNSLIGVDTRIALNTRSRAGGLVRVERKKRGIALQIFSGTIHFP 728
Query: 608 GEIDKISQHSAILIPPEMVKKKILRNQKKKTNWR---YIQWITTTKKKYFVLVRPVILYD 664
GE DKIS S ILIPP K RN K+ W+ Y+Q IT TKKK+FVL RPV+ Y+
Sbjct: 729 GETDKISWDSGILIPPGTGK----RNSKESKKWKNGIYVQRITPTKKKHFVLFRPVVTYE 784
Query: 665 IADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNED 724
IAD +NL +LFP DL +E DN++L+++N+I+YGNGK IR I DTSIQLVRT +LNW++D
Sbjct: 785 IADGLNLARLFPPDLCQEKDNMQLQIVNYIVYGNGKPIREISDTSIQLVRTWFILNWDQD 844
Query: 725 EKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRINI 784
+KS+S E A ASFVEV GLIR FLRIDLVKS I RKRNDPS SGLIS N SD NI
Sbjct: 845 KKSASAEAAHASFVEVRAKGLIRDFLRIDLVKSPILDPRKRNDPSGSGLISDNVSDHTNI 904
Query: 785 NPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKE 844
NPF+S K ++QS Q HGTIR LLN+NKE S +ILS+SN F+MGPFN+VK N IKE
Sbjct: 905 NPFYS--KPKMKQSPRQNHGTIRTLLNQNKECPSLMILSASNWFRMGPFNDVKSQNVIKE 962
Query: 845 EINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI 904
I K++ I I+ S+GPLG A Q+ NF SFY+ ITHN++ + K LQ+ K+TFQV+
Sbjct: 963 SI---KKDAIIQIRNSIGPLGTALQVVNFDSFYYFITHNQV-LLTKYLQVENLKQTFQVL 1018
Query: 905 KYYLMDENERIYKPDLYNNIILNPFHLNWDFI-HPNY---CEKTFPIISLGQFICENVCI 960
+YYLMDE+ RIY PD +NI+LN F+L+W F+ H NY CE+ I+SLGQFICEN CI
Sbjct: 1019 QYYLMDESGRIYNPDPRSNIVLNSFNLSWYFLPHNNYENSCEEISTIVSLGQFICENGCI 1078
Query: 961 VQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKS 1020
KNGP L+SGQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LY+GD +VTF+YEKS
Sbjct: 1079 --AKNGPYLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKS 1136
Query: 1021 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQD 1080
RSGDITQGLPKVEQVLEVRS+DSIS+NLEKR++ WNE IT ILG PW I ++Q
Sbjct: 1137 RSGDITQGLPKVEQVLEVRSVDSISVNLEKRVENWNEHITRILGFPWGFLIGAELTIVQS 1196
Query: 1081 NIS 1083
IS
Sbjct: 1197 RIS 1199
>RPC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1384
Score = 1151 bits (2978), Expect = 0.0
Identities = 609/957 (63%), Positives = 714/957 (73%), Gaps = 44/957 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRC+ RNQD+GIGL+NRFI F TQPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 259 IYIGSRCVAFRNQDLGIGLVNRFITFGTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 318
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKIKFNE+ + TRT
Sbjct: 319 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHSTRT 378
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ+IAEIR GTYT
Sbjct: 379 RHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVIAEIREGTYTFQF 438
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RK+I+SDSEG MHWST++ H EF YSNVH+LPKTSHLWILSG S S + S+
Sbjct: 439 KERVRKYIYSDSEGGMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLILFSIH 498
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------LCPD-----------HCH 434
KDQDQM+ L +++ S+ V+N+QV L P+ H +
Sbjct: 499 KDQDQMNIPFLSVERKSISSLSVNNDQVSQKFFSSDFSDKKILIPNYSELNGIVGTSHYN 558
Query: 435 FMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSIL 492
F++ I + S+LLAK+RRNRF+IPF +E+ E +P ISVEIPI+GI +NSI
Sbjct: 559 FIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEQEKEFIPHSGISVEIPINGIFRRNSIF 618
Query: 493 AYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVH 552
A+FDDP+YR +SSGI KY T+ SI QKED+IEYRG+++FK KY++KVDRFFFIP+EVH
Sbjct: 619 AFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKFKTKYEMKVDRFFFIPEEVH 678
Query: 553 ILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDK 612
IL ESS+IMV N SIIGV+T ITLN +S+VGGL+RVE+ KK+IELKIFSGDIHFP + DK
Sbjct: 679 ILPESSAIMVENYSIIGVDTRITLNIRSQVGGLIRVERKKKRIELKIFSGDIHFPDKTDK 738
Query: 613 ISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLV 672
IS+HS ILIPP K + K NW Y+Q IT TKKK+FVLVRPV Y+IADSINL
Sbjct: 739 ISRHSGILIPPGRGKTN-SKESKIVKNWIYVQRITPTKKKFFVLVRPVATYEIADSINLA 797
Query: 673 KLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEE 732
LFP+DLF+E DN++L+V N+ILYGNGK RGI DTSIQLVRTCLVLNW++D K+SS+EE
Sbjct: 798 TLFPKDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNWDQDNKNSSLEE 857
Query: 733 ALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYK 792
A FVEV+T GLIR F+RI LVKSHISYIRKRN+PSS E ++NPF+SI
Sbjct: 858 VRAFFVEVNTKGLIRDFIRIGLVKSHISYIRKRNNPSS----EKKEGSDHSMNPFYSISP 913
Query: 793 EN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFK 850
+ + QSL Q HGTIRM LNRN+ N +ILSSSNCF++GPFN+VKYHN I + I +
Sbjct: 914 KAGILHQSLRQNHGTIRMFLNRNR-NPILLILSSSNCFRIGPFNHVKYHNVINQSIKKKT 972
Query: 851 RNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMD 910
N+ IK P G A QI F F N+IS I K L L F VI YL+D
Sbjct: 973 SNY---IKNCRAPYGTAIQILIFIHFAFTKLINQISCI-KYLHLQTSNVFFPVIHSYLID 1028
Query: 911 ENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQFICENVCIVQTKNG 966
EN RI+ D Y+N++LNPF LNW F+H NYCE+T IISLGQF CENVCI K
Sbjct: 1029 ENGRIFNLDPYSNLVLNPFKLNWYFLHQNYNNNYCEETSTIISLGQFFCENVCI--AKKE 1086
Query: 967 PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
P LKSGQV+ VQ D V IR A PYLATPGA +HGHY E+LYEGD LVTFIYEKSRSGDIT
Sbjct: 1087 PYLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDIT 1146
Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
QGLPKVEQVLEVRSIDSIS+NLEKRI WN IT ILGIPW I ++Q IS
Sbjct: 1147 QGLPKVEQVLEVRSIDSISLNLEKRIKGWNRCITRILGIPWGFLIGAELTIVQSRIS 1203
>RPC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1373
Score = 1145 bits (2963), Expect = 0.0
Identities = 609/953 (63%), Positives = 717/953 (74%), Gaps = 45/953 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
+Y+G RCI RNQDIGIGL+NRFI + QPI+IR+PFTCR+TSWIC+LCYGRS HG+LV
Sbjct: 258 VYMGLRCIATRNQDIGIGLVNRFITSRAQPIYIRSPFTCRSTSWICQLCYGRSTTHGNLV 317
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGG AE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 318 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGIAEHVRAPSNGKIKFNEDLVHPTRT 377
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLC+IDL+VTIES DI+H V IPPKSFLLVQNDQYV+SEQ+IAEIRAGT TL
Sbjct: 378 RHGHPAFLCHIDLHVTIESQDIIHKVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTL-- 435
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE+++KHI+SDSEGEMHWST++YH E+ + NVH+LPKTSHLW+LSG+ +S V L
Sbjct: 436 KERVQKHIYSDSEGEMHWSTDVYHTPEYTHGNVHLLPKTSHLWVLSGSPCRSSIVPFPLH 495
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR----------------------LCPDHCHFM 436
KDQDQM+ SL +R S+ ++N++VR + + +
Sbjct: 496 KDQDQMNVQSLYVEERYISDLSMNNDRVRHKLFGWDQKRGRVSYYSGPDRIISNRNWDSI 555
Query: 437 HPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD-ISVEIPIDGIIHKNSILAYF 495
+P I + S+LLAK+RRNRFIIPF + +E+ EL P I ++IPI GI+ +NSILAYF
Sbjct: 556 YPLILHENSDLLAKRRRNRFIIPFQYD--QEQEKELRPPGIVIKIPIKGILRRNSILAYF 613
Query: 496 DDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI--KVDRFFFIPQEVHI 553
DDP+YR SSGIAKY TI + SI +KEDLIEYR REF PKYQI KV+RFFFIP+EVHI
Sbjct: 614 DDPRYRRSSSGIAKYGTIEVDSIIKKEDLIEYRKTREFGPKYQIQIKVNRFFFIPEEVHI 673
Query: 554 LSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKI 613
L SSSIMVRNNSIIGV+T ITLN +S+VGGLVRVEK KK+IELKI SGDIHFPGE D I
Sbjct: 674 LPRSSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVEKKKKRIELKISSGDIHFPGETDNI 733
Query: 614 SQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVK 673
+++S ILIPP VK + K NW Y+Q IT KKKYFV VRPV+ Y+IAD INL
Sbjct: 734 ARYSGILIPPGRVKN----TESKFKNWIYVQRITPIKKKYFVSVRPVVTYEIADGINLAT 789
Query: 674 LFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSS-SIEE 732
FPQDL +E +NL+L+V+N+ILYG+GK IRGI TSIQLVRTCLVLNW++D S EE
Sbjct: 790 FFPQDLLQEKNNLQLRVVNYILYGDGKPIRGIFHTSIQLVRTCLVLNWDQDRAGSIEEEE 849
Query: 733 ALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYK 792
A S EV N LIR F+RIDLVKS IS K ND + SGLI N SDRIN NPFFS K
Sbjct: 850 AYTSLAEVRVNDLIRNFIRIDLVKSPISSTGKENDMAGSGLIPNNGSDRINTNPFFSKAK 909
Query: 793 ENIQQSLSQKHGTIRMLLNRNKENR--SFIILSSSNCFQMGPFNNVKYHNGIKEEINQFK 850
QSLSQ GTIR LLNRNKE + S ++LSSSNC ++GP N KYHN KE I +
Sbjct: 910 T---QSLSQHQGTIRTLLNRNKEGQGESLMVLSSSNCSRIGPLNGSKYHNVTKESIQE-- 964
Query: 851 RNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMD 910
+ I I+ SLGPLG P I NF S YH ITHN+I K L + +ETF V K Y MD
Sbjct: 965 -DPMISIRNSLGPLGTVPNILNFSSSYHSITHNEIL-FNKYLLPDNSRETFLVPKSYFMD 1022
Query: 911 ENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLK 970
EN RIY D +NIIL PF+LNW F+H +Y E T IISLGQF+CEN+CI +K+GP +K
Sbjct: 1023 ENRRIYNLDPCSNIILTPFNLNWCFLHHDYWEDTSTIISLGQFLCENICI--SKDGPCVK 1080
Query: 971 SGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLP 1030
SGQ+I V +D + IRLA +LAT GAT+HGHYGE+LYEGD LVTFIYEKSRSGDITQGLP
Sbjct: 1081 SGQIIIVHVDSLVIRLAKYHLATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLP 1140
Query: 1031 KVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
KVEQVLEVRSIDSISMNLEKR++ WNERITG LGIPW IS ++Q IS
Sbjct: 1141 KVEQVLEVRSIDSISMNLEKRVEGWNERITGFLGIPWEFFISAQLTIVQSRIS 1193
>RPC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1386
Score = 681 bits (1758), Expect = 0.0
Identities = 411/989 (41%), Positives = 600/989 (60%), Gaps = 83/989 (8%)
Query: 139 NDVRKNFDTNINWSCISRRYIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCR 198
++ + NF + I+ IYI RCI RNQDIG L NR I +T+ IF+R+P TC+
Sbjct: 232 SEKKNNFQQKLIGRVIAEN-IYIDHRCIAPRNQDIGALLANRLITLKTKQIFLRSPLTCK 290
Query: 199 NTSWICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYV 258
+ +WIC+LCYG S HG+L+E+GEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG AE+V
Sbjct: 291 SMNWICQLCYGWSLSHGNLIEMGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHV 350
Query: 259 RSPSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQ 318
R+P NG I+FNEN YPTRTRHGHPA++C+ +L++ I+S + +HN+ IPPKS LLVQN+Q
Sbjct: 351 RTPFNGIIEFNENFVYPTRTRHGHPAWMCHTNLFLVIKSKNKVHNLTIPPKSLLLVQNNQ 410
Query: 319 YVKSEQIIAEIRAGTYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTS 378
YV+S+Q+IAEIRA T KEK++K+I+S+ EGEMHWST + H SE+ +SN+H++ KT
Sbjct: 411 YVESKQVIAEIRAKTSP--FKEKVQKYIYSNLEGEMHWSTKVRHASEYIHSNIHLILKTC 468
Query: 379 HLWILSGNSH-KSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCH--- 434
H+WILSGN H K++ +S+ K+QD++ T ++N +F+ + Q+ L H +
Sbjct: 469 HIWILSGNFHKKNNDLSVLFYKNQDKIDFPISLTKEKNEFSFVKNKTQLNLFLFHFYLYK 528
Query: 435 ----FMHPTISPDTSNLLAKKRRNRFIIP---------FLFRSIRERNNELMPDISVEIP 481
F+ ++ + N + + FI+ F F +N L + ++I
Sbjct: 529 KNKIFIKSQLTNNILNKINNSKNYNFILQEYNIKKKKNFYFL----KNKNLTCPLFLKIK 584
Query: 482 IDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQ-IK 540
+G++ N I A DDP Y+ ++SGI KY I + I Q + E + F+P+Y IK
Sbjct: 585 KNGVLKNNEIFAILDDPSYKVKNSGILKYGNIKVDLINQNTN-FEDPQTKLFRPRYSIIK 643
Query: 541 VDRFFFIPQEVHILSES-SSIMVRNNSIIGVNTPITLNKKSRVGGLVRVE-KNKKKIELK 598
FFFIP+EV++L++S SS+ ++NN I T IT N +S GLV+++ K ELK
Sbjct: 644 EGNFFFIPEEVYVLTQSLSSVFIKNNKFIQAGTLITSNIRSNTNGLVKIQKKGNNNYELK 703
Query: 599 IFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVR 658
I G I++P E KIS+ +ILIPP K L N+ + NW Y+QWI +K+K FVL+R
Sbjct: 704 ILPGTIYYPNETYKISKQISILIPP----GKKLFNEFECKNWTYLQWIMPSKEKPFVLIR 759
Query: 659 PVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLV 718
P + Y I+ +N LF DL K+ +E+K +N++LY + + I+ I + +IQL++TCL+
Sbjct: 760 PAVEYKISKKLNKSTLF--DLLKKNKKVEIKTINYLLYEDDEQIQIINEKNIQLIQTCLL 817
Query: 719 LNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNE 778
++W +K +EA SF+++ T + FL+I L++ + + +K+ S ++ N
Sbjct: 818 VHW---KKKYFFKEANVSFLKIKTKNNFKTFLQISLIE-YSNLEKKKEKTISKNVLKKNY 873
Query: 779 SDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKY 838
D FFSI K ++ ++K G IR++ N+N +SFIILSSS+ + F +
Sbjct: 874 YDH-----FFSISKNELK---NKKQGVIRIISNQNNGMQSFIILSSSDLVKTFKFKKLTK 925
Query: 839 HNGIKEEIN-------QFKRNHKIPIK------------------ISLGPLGVAPQI-AN 872
+ IK N +F +N KI K LG LG I N
Sbjct: 926 NISIKTNTNTSTAKFFEFNKNFKILNKKKKLNLTKKNFSIGLLLFKKLGFLGNLHNIVTN 985
Query: 873 FFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLN 932
FS ++LI + K+ S K ++ + KF+ T Q K+YL+DE+++I K L +I N F N
Sbjct: 986 SFSSFYLINYTKLISNKYSI-ITKFQHTCQNPKWYLIDESKKINKLILGKHINYNLF--N 1042
Query: 933 WDFIHPNYCEK--TFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPY 990
W F + +K F I LGQ + EN I + K + SGQ+I++ +++ IRLA PY
Sbjct: 1043 WCFPLFSLLKKKIDFQTIKLGQLLFENFVISKYKT--SYPSGQIISININYFIIRLAKPY 1100
Query: 991 LATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1050
LAT GATIH +YGE + EGD L+T IYE+ +SGDI QGLPKVEQ+LE R I+S+S+NLE
Sbjct: 1101 LATGGATIHNNYGEFIKEGDTLITLIYERLKSGDIIQGLPKVEQLLEARPINSVSINLEN 1160
Query: 1051 RIDAWNERITGILGIPW----SRKISMSR 1075
+ WN + +G W S KISM +
Sbjct: 1161 GFEDWNNDMIKFIGNLWGFFLSTKISMEQ 1189
>RPC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1330
Score = 639 bits (1649), Expect = 0.0
Identities = 378/952 (39%), Positives = 561/952 (58%), Gaps = 71/952 (7%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYI RCI +RNQDI L+ INFQ + IFIR+P C++ WIC+LCYG S HG+L+
Sbjct: 244 IYINGRCIAIRNQDITTNLVISLINFQRKGIFIRSPLICKSMLWICQLCYGWSLTHGNLI 303
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG AE++R+P NG I+F+ NS YPTRT
Sbjct: 304 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHIRTPFNGIIQFDTNSVYPTRT 363
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPA++C +L V I+S +HN++IP +S LLVQ++QYV+S+Q+IAE+RA T
Sbjct: 364 RHGHPAWICNNNLSVVIKSKKKLHNLVIPTQSLLLVQSNQYVESKQVIAEVRAKTSP--F 421
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK++K+I+S+ GEMHWS+ + H SE+ +SNVH+L KT H+WIL+GN K + S
Sbjct: 422 KEKVQKYIYSNLSGEMHWSSKVQHSSEYIHSNVHLLRKTGHIWILAGNFDKDNKFSFIFY 481
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII 458
++QD++ + LP AK+ + F + HF++ + S+++ R
Sbjct: 482 QNQDKLD-NKLPIAKQTLNYFQLKE----------HFLNNFWNSIYSSIILYNYR----- 525
Query: 459 PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI 518
FL + + +L+ +++P +GI+ +N I A F+DP+YR ++SGI KY I + I
Sbjct: 526 -FLEKKNNKYEKKLLFQFMLKLPKNGILKQNDIFAIFNDPKYRIKNSGIIKYGNIKVDLI 584
Query: 519 FQKEDLIEYRGIREFKPKYQI-KVDRFFFIPQEVHILSES--SSIMVRNNSIIGVNTPIT 575
+K D+ E + + +P+Y+I K FF +P+EV+IL +S SSI+V+NNS I T IT
Sbjct: 585 NKKNDIFEDQKTKTVRPRYKILKEGNFFLLPEEVYILDQSSFSSILVKNNSFIKAGTKIT 644
Query: 576 LNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQK 635
N S++ G V+++K ++KI G I++P E K + + ILIPP +KI +
Sbjct: 645 FNISSKITGFVKIKKKFNNFKIKILPGSIYYPKEKQKNFKQNGILIPP---GEKIFEQFR 701
Query: 636 KKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKL---FPQDLFKEWDNLELKVLN 692
K NW Y++WI +K F L+RP I Y I + N + L F DL KE ++++ +
Sbjct: 702 AK-NWIYLEWIVLSKDNSFFLIRPAIEYKIIFNDNPLTLPIPFYLDLLKEQKKIKIQTVK 760
Query: 693 FILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRI 752
+ILY + + + DT IQL++TCL+LNW E I+EA SF+++ N +I+ F +I
Sbjct: 761 YILYEDSEEVEINPDTDIQLIQTCLILNW---ETKVFIKEAHISFIKIRINKIIKNFFQI 817
Query: 753 DLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQS-------LSQKHGT 805
+L++ + L++ +++ I +N F + I Q LS+ G
Sbjct: 818 NLIE-------------NINLMNKKKNNNIILNYLFKKKRYIINQKDCEKILLLSKTWGI 864
Query: 806 IRMLLNRNKENRSFIILSSSNCFQMGPFN----NVKYHNGI--------KEEINQFKRNH 853
IR N+N+E F+ILS N FQ F+ N+K N + K+ I F
Sbjct: 865 IRTPSNKNQEKSFFLILSPFNLFQTILFDKTKQNLKIENNVEKLFTYEPKKIIKTFNIEK 924
Query: 854 KIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQ-LNKFKETFQVIKYYLMDEN 912
+ LG LG I F + + SI N ++ K+ ++ K++ ++EN
Sbjct: 925 RKNFVEFLGLLGYLQNITKSFQLFSCKKFSD-KSIPINFSIIDNLKKKIKISKWFFLNEN 983
Query: 913 ERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSG 972
+++ K L N IL+ LNW F + +K + +LG F C+ + I + +SG
Sbjct: 984 KKVQKFFLTQNTILS--LLNWSFPIFDLAKKKTQLFNLGHFFCDGLSIAEYPTFS--ESG 1039
Query: 973 QVITVQMDF-VGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPK 1031
Q+I + D + IRLA PYLAT GA IH +YGE++ EGDIL+T IYE+ +SGDI QGLPK
Sbjct: 1040 QIIAIYDDLSLVIRLAKPYLATGGAIIHNNYGEIVKEGDILITLIYERLKSGDIIQGLPK 1099
Query: 1032 VEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
VEQ+LE R + +S+NLEK WN+ +T G W +S + Q ++
Sbjct: 1100 VEQLLEARLTNPVSINLEKGFGEWNKDMTNFFGSLWGYFLSAQISMEQSQVN 1151
>RPC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1445
Score = 630 bits (1626), Expect = e-180
Identities = 393/1019 (38%), Positives = 577/1019 (56%), Gaps = 117/1019 (11%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIH-GDL 217
+YI +RC+ +RNQDI LI + I +T I IR+P TC++ WIC+LCYG S H GDL
Sbjct: 255 LYINARCLAIRNQDINTNLIEKLITLKTPLISIRSPLTCKSMLWICQLCYGWSLTHYGDL 314
Query: 218 VELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTR 277
VELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG AE+VR+P NG I+F+ + YPTR
Sbjct: 315 VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRTPFNGTIEFDTDLVYPTR 374
Query: 278 TRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLN 337
TRHGHPA++C DL VTI+S + +HN+IIP +S LL+QN+QYV+S+Q+IAE+ A
Sbjct: 375 TRHGHPAWVCRTDLAVTIKSQNKIHNLIIPSQSLLLIQNNQYVESKQLIAEVHAKVSPF- 433
Query: 338 LKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSL 397
KEK++K+I+ + EGEMHWS + H S++ +SNVH++ T HLWILSG+SH+ T S+
Sbjct: 434 -KEKVQKYIYCNIEGEMHWSKRVRHASKYLHSNVHLIFNTGHLWILSGSSHEDKTSSM-F 491
Query: 398 LKDQDQMSTHSL---------------------PTAKRNTSNFLVSNNQVRLCPDHCHFM 436
K+QDQ++T P ++ SN + + +F+
Sbjct: 492 FKNQDQINTKFFISPRKILFMKKTNQVNSKNLDPYLEKEMETLNYSNLYLGILNKSRNFV 551
Query: 437 HPTI---SPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILA 493
+P+I + + +K+ F++ L E+ ++ + IP GI+ I A
Sbjct: 552 YPSIILHDYEVKRIYDEKKGENFLL--LEERHGEKKTQIFRRFVLNIPKSGILENKDIFA 609
Query: 494 YFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRG--IREFKPKYQ-IKVDRFFFIPQE 550
+DP Y QS GI KY TI ++ I K + + R I +P+YQ I+ FF IP+E
Sbjct: 610 ISNDPGYGIQSPGIIKYGTIKVNPIKGKGETFKNRETKILRLRPRYQVIEPGNFFPIPEE 669
Query: 551 VHILSES-SSIMVRNNSIIGVNTPITLNKKSRVGGLVRVE-KNKKKIELKIFSGDIHFPG 608
VHIL ES I+VRN+S+I NT IT + +S+VGGLVR+ K E+K+ G ++ P
Sbjct: 670 VHILYESFPPILVRNDSLIKKNTQITSDIRSQVGGLVRIRRKMNDSYEVKVLPGRVYHPE 729
Query: 609 EIDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADS 668
E IS+ + IL+PP + + N+ + NW Y++WIT K+K F+ +RP I + + +
Sbjct: 730 ERRNISKQNDILVPPG----EEISNKFQSENWLYLEWITPPKEKPFIFIRPAIEFIVPEE 785
Query: 669 INLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSS 728
+L + F + K+ + L++K + ++LY +G+ + T IQL++T LVL+W ED S
Sbjct: 786 TDLAETFTLNSQKKQEILKVKKIRYLLYEDGEEVEVTNKTGIQLIQTGLVLDWKED---S 842
Query: 729 SIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFF 788
SI++ AS E+ TNGL + FL+I L++ I I K+ + + + Y ++ IN +
Sbjct: 843 SIKKVYASLTEIETNGLSKKFLQISLIEHPIFEIEKKKNNVN---LKYLFTNEIN----Y 895
Query: 789 SIYKENIQQSLSQKH-GTIRMLLNRNKENRSFIILSSSNCFQM----------------- 830
S + N + L + G IR+ N N+E++S ILS + Q+
Sbjct: 896 SSHSFNYENGLFNGYRGIIRISSNENQEDKSLPILSPFDFVQIFLSKNSEEYTPEMKDEG 955
Query: 831 -------------------------------GPFNNVKY--HNGIKEEINQFK--RNHKI 855
G F N ++ HN I +E N K RN +
Sbjct: 956 NFNLDTNSIFYAKSFVKKFNQNSITSSQNSSGTFINKEFYNHNNINQEFNSRKIIRNFFL 1015
Query: 856 PIKIS---------LGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKY 906
I+ + LG LG + + + F F + I + L ++ FQV K+
Sbjct: 1016 SIERNFMEILLLRKLGLLGNSHSLPSPFQFSCWANTHNQPIINRYSILENLRDVFQVPKW 1075
Query: 907 YLMDENERIYKPDLYNNIILNPFHL-NWDF-IHPNYCEKTFPIISLGQFICENVCIVQTK 964
Y DEN++ +K DL N I +HL W F I +Y E ++ LGQFICEN+ I +K
Sbjct: 1076 YFFDENKKTHKLDLSKNSI---YHLLTWSFSIALSYEEGAIHLVGLGQFICENISI-SSK 1131
Query: 965 NGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGD 1024
+SGQ+I + +F+ +RLA P LAT GATIH HYG+++ +GD+L+T +YE+ +SGD
Sbjct: 1132 YQTISESGQIIAIHPEFLVVRLAKPSLATGGATIHSHYGQIIKKGDVLITLVYERLKSGD 1191
Query: 1025 ITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
I QGLPKVEQ+LE R I+S S+NLE + WN +T LG W +S + Q I+
Sbjct: 1192 IIQGLPKVEQLLEARPINSTSINLENGFENWNRDMTKSLGSLWGFLLSAKTTMNQSQIN 1250
>RPC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1527
Score = 553 bits (1424), Expect = e-156
Identities = 318/594 (53%), Positives = 399/594 (66%), Gaps = 28/594 (4%)
Query: 496 DDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILS 555
+D + ++ +Y + SI +KE IE+RG +EF KYQ +VDRFFFI QE+HIL
Sbjct: 766 EDSEEDSEEDSEDEYGSPEEDSILKKEGFIEHRGTKEFSLKYQKEVDRFFFILQELHILP 825
Query: 556 ESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQ 615
SSS+ V +NSIIGV+T +T N +SR+GGLVRV++ K ELKIFSGDIHFP E DKI
Sbjct: 826 RSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILG 885
Query: 616 HSAILIPPEMVKKKILRNQKKKTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVK 673
S LIPPE +KK + KK+ NW Y+Q +K+KYFV VRP + Y++ + INL
Sbjct: 886 GS--LIPPER-EKKDSKESKKRKNWVYVQRKKFLKSKEKYFVSVRPAVAYEMDEGINLAT 942
Query: 674 LFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEA 733
LFPQDL +E DNL+L+++NFI + N K + I T+ Q VRTCLV+NW ++EK E A
Sbjct: 943 LFPQDLLQEEDNLQLRLVNFISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EGA 998
Query: 734 LASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKE 793
AS VEV TN LIR FLRI+LVKS I Y R+R D +S GLI N DR N N F+S K
Sbjct: 999 RASLVEVKTNDLIRDFLRIELVKSTILYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKI 1058
Query: 794 NIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNH 853
QSLSQ I LLNRNKE S +IL +SNC ++G F N KY N +KE N
Sbjct: 1059 ---QSLSQHQEVIGTLLNRNKEYPSLMILLASNCSRIGLFKNSKYPNAVKES------NP 1109
Query: 854 KIPIKISLGPLGV-APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLM 909
+IPI+ G LGV P I+NF S Y+L+THN+I +KK L L+ K+T QV+ KY L+
Sbjct: 1110 RIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQIL-LKKYLFLDNLKQTLQVLQGLKYSLI 1168
Query: 910 DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNL 969
DEN+RI D +NI+L PFHLNW F+H + E+T II LGQFICEN+C+ +
Sbjct: 1169 DENKRISNFD--SNIMLEPFHLNWHFLHHDSWEETLAIIHLGQFICENLCLFKLHIK--- 1223
Query: 970 KSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGL 1029
KSGQ+ V MD +R A PYLAT GAT+HGHYG++LY+GD LVTFIYEKSRS DITQGL
Sbjct: 1224 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1283
Query: 1030 PKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
PKVEQ+ E RSIDS+S NLE+RI+ WNERI ILG+PW I + Q IS
Sbjct: 1284 PKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS 1337
Score = 462 bits (1190), Expect = e-129
Identities = 236/401 (58%), Positives = 294/401 (72%), Gaps = 32/401 (7%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNTSWICRLCYGRSP 212
IYIGSRCI RNQDIGIGL+NRFI F+ QPI+IRTPFTCR+TSWIC+LCYGRSP
Sbjct: 252 IYIGSRCIASRNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPFTCRSTSWICQLCYGRSP 311
Query: 213 IHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENS 272
HGDLVELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTA+ +RSPSNGKI+FNE+
Sbjct: 312 THGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLIRSPSNGKIQFNEDL 371
Query: 273 AYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAG 332
+PTRTRHG PAFLCYIDL+VTI+S DI+H+V IP KS +LVQNDQYV+SEQ+IAEIRAG
Sbjct: 372 VHPTRTRHGQPAFLCYIDLHVTIQSQDILHSVNIPLKSLILVQNDQYVESEQVIAEIRAG 431
Query: 333 TYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDT 392
T TL+ KEK++KHI+S+S+GEMHWST++YH E+ Y N+ LPKTSHLWILS + +S
Sbjct: 432 TSTLHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLWILSVSMCRSSI 491
Query: 393 VSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR-----------------LCPD---- 431
S SL KDQDQM+T+S R +F ++N+QV L PD
Sbjct: 492 ASFSLHKDQDQMNTYSFSVDGRYIFDFSMANDQVSHRLLDTFGKKDREILDYLTPDRIVF 551
Query: 432 --HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKN 489
H + +P+I D S+LLAKKRRNR ++P + +E+ IS+EIP G++ +N
Sbjct: 552 NGHWNCFYPSILQDNSDLLAKKRRNRLVVPLQYHQEQEKERISCLGISMEIPFMGVLRRN 611
Query: 490 SILAYFDDPQYR--TQSSGIAKYKTIGIHSIFQKEDLIEYR 528
+I AYFDDP+YR + SGI K++ + ++ ++ EYR
Sbjct: 612 TIFAYFDDPRYRKDKRGSGIVKFRYRTLEEEYRTQE-EEYR 651
>RPC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1479
Score = 545 bits (1405), Expect = e-154
Identities = 313/581 (53%), Positives = 400/581 (67%), Gaps = 28/581 (4%)
Query: 509 KYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSII 568
+Y++ SI +KE LIE+RG +EF KYQ +VDRFFFI QE+HIL SSS+ + +NSII
Sbjct: 742 EYESPEEDSILKKEGLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKILDNSII 801
Query: 569 GVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKK 628
GV+T +T N +SR+GGLVRV++ K ELKIFSGDIHFP E DKI LIPPE +K
Sbjct: 802 GVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKIL--GGCLIPPER-QK 858
Query: 629 KILRNQKKKTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNL 686
K + KK+ NW Y+Q I +K+KYFV VRP + Y++ + NL LFPQDL +E +NL
Sbjct: 859 KDSKESKKRKNWVYVQRKKILKSKEKYFVSVRPTVAYEMDEGRNLATLFPQDLLQEENNL 918
Query: 687 ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 746
+++++NFI + N K + I T+ Q VRTCLV+NW ++EK E+A AS VEV N LI
Sbjct: 919 QIRLVNFISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLI 974
Query: 747 RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTI 806
R FLRI+LVKS ISY RKR D +S+G I +N DR NIN F+S K +SLSQ I
Sbjct: 975 RDFLRIELVKSTISYTRKRYDRTSAGPIPHNRLDRANINSFYSKAKI---ESLSQHPEAI 1031
Query: 807 RMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLG- 865
LLNRNKE S +ILS+SNC ++G F N K+ N IKE N +IPI+ GPLG
Sbjct: 1032 GTLLNRNKEYHSLMILSASNCSRIGLFKNSKHPNAIKEW------NPRIPIREIFGPLGA 1085
Query: 866 VAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLMDENERIYKPDLYN 922
+ I++F S Y+L+THNKI +KK L ++ K+TFQV+ KY L+DEN+RI D +
Sbjct: 1086 IVASISHFSSSYYLLTHNKIL-LKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--S 1142
Query: 923 NIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFV 982
NI+L+PF LN F+H + E+T II LGQFICENVC+ ++ KSGQ+ V M+
Sbjct: 1143 NIMLDPFLLNCHFVHHDSWEETLAIIHLGQFICENVCLFKSHIK---KSGQIFIVNMNSF 1199
Query: 983 GIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1042
IR A PYLAT GAT++GHYGE+LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSID
Sbjct: 1200 VIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSID 1259
Query: 1043 SISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
S+S NLE+RI+ WNERI ILG+PW I + Q IS
Sbjct: 1260 SLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS 1300
Score = 466 bits (1199), Expect = e-130
Identities = 232/364 (63%), Positives = 285/364 (77%), Gaps = 18/364 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNTSWICRLCYGRSP 212
IYIGSRCI RNQDIGIGL+NRFI F+ QPI+IRTPFTCR+TSWIC+LCYGRSP
Sbjct: 252 IYIGSRCIAARNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPFTCRSTSWICQLCYGRSP 311
Query: 213 IHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENS 272
H DLVELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTA+ VRSPSNGKIKFNEN
Sbjct: 312 THSDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLVRSPSNGKIKFNENL 371
Query: 273 AYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAG 332
+PTRTRHG PAFLCYIDL+VTI+S DI+++V IP KS +LVQNDQYVKSEQ+IAEIRAG
Sbjct: 372 VHPTRTRHGQPAFLCYIDLHVTIQSQDILYSVNIPSKSLILVQNDQYVKSEQVIAEIRAG 431
Query: 333 TYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDT 392
T TL+ KE+++KHI+S+S+GEMHWST++YH E+ Y N+ LPKTSHLWILS + +S
Sbjct: 432 TSTLHFKERVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLWILSVSMCRSSI 491
Query: 393 VSLSLLKDQDQMSTHSLPTAK---RNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLA 449
S SL KDQDQM+T+ + +TS+ ++SN H +F++P+I D S+LLA
Sbjct: 492 ASFSLHKDQDQMNTYGKKDREILDYSTSDRIMSNG-------HWNFIYPSIFQDNSDLLA 544
Query: 450 KKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYR--TQSSGI 507
KKRRNRF+IP + +E+ IS+EIP+ G++ +N+I AYFDDP+YR + SGI
Sbjct: 545 KKRRNRFVIPLQYHQEQEKELISCFGISIEIPLMGVLRRNTIFAYFDDPRYRKDKKGSGI 604
Query: 508 AKYK 511
K++
Sbjct: 605 VKFR 608
>RPC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1513
Score = 538 bits (1386), Expect = e-152
Identities = 311/580 (53%), Positives = 395/580 (67%), Gaps = 35/580 (6%)
Query: 517 SIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITL 576
S+ +K LIE+RG +EF KYQ +VDRFFFI QE+HIL SSS+ V +NSIIGV+T +T
Sbjct: 768 SVLKKGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGVDTQLTK 827
Query: 577 NKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQKK 636
N +SR+GGLVRV++ K ELKIFSGDIHFP E DKI S LIP E +KK + KK
Sbjct: 828 NTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILGGS--LIPLER-EKKDSKESKK 884
Query: 637 KTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFI 694
+ NW Y+QW I +K+KYFVLVRP + Y++ + NL LFPQDLF+E NL+L+++NFI
Sbjct: 885 RENWVYVQWKKILKSKEKYFVLVRPAVAYEMNEGRNLATLFPQDLFEEEGNLQLRLVNFI 944
Query: 695 LYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDL 754
+ N K + I T+ Q VRTCLVLNW ++EK EEA AS VE+ NGLIR FLRI L
Sbjct: 945 SHENSKLTQRIYHTNSQFVRTCLVLNWEQEEK----EEARASLVEIRANGLIRDFLRIGL 1000
Query: 755 VKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNK 814
+KS ISY RKR D S+GLI +N DR N N F+S K QSLSQ I LLNRNK
Sbjct: 1001 IKSTISYTRKRYDSRSAGLILHNRLDRTNTNSFYSKAKI---QSLSQHQEAIGTLLNRNK 1057
Query: 815 ENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPI-------KISLGPLG-V 866
E +S ++LS+SNC ++G F N K NG+KE N +IPI + G LG +
Sbjct: 1058 EYQSLMVLSASNCSRIGFFKNSKNPNGVKES------NPRIPIPKFWGLFRNFSGLLGTI 1111
Query: 867 APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLMDENERIYKPDLYNN 923
AP I+NF S Y+L+T+N+I +KK+L L+ K+ F+V+ K+ L++EN+R D +N
Sbjct: 1112 APSISNFSSSYYLLTYNQIL-LKKHLLLDNLKQNFKVLQGLKHSLINENQRTSNFD--SN 1168
Query: 924 IILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVG 983
I+L+PF LNW F+ + E+T I LGQFICENVC+ ++ KSGQ+ V +D
Sbjct: 1169 IMLDPFQLNWHFLPHDSWEETSAKIHLGQFICENVCLFKSHIK---KSGQIFIVNIDSFV 1225
Query: 984 IRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDS 1043
IR A PYLAT GAT+HGHYGE+LY+GD LVTFIYEK+RS DITQGLPKVEQ+ E RSIDS
Sbjct: 1226 IRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDS 1285
Query: 1044 ISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
+S NLE+RI+ WNERI ILG PW I + Q IS
Sbjct: 1286 LSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQSRIS 1325
Score = 450 bits (1157), Expect = e-125
Identities = 226/384 (58%), Positives = 283/384 (72%), Gaps = 31/384 (8%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNTSWICRLCYGRSP 212
IYIGSRCI RNQDIGIGL+NRFI F+ QPI+IRTPFTCR+TSWIC+LCYGRS
Sbjct: 252 IYIGSRCIATRNQDIGIGLVNRFITTFRAQPFRAQPIYIRTPFTCRSTSWICQLCYGRSS 311
Query: 213 IHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENS 272
HGDLVELGEAVG+IAGQSIGEPGTQLTL TFHTGGVFTGGTA+ VRSPSNGKI+FN +
Sbjct: 312 THGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLVRSPSNGKIQFNGDL 371
Query: 273 AYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAG 332
+PTRTRHG PAFLCYIDL++TI+S DI+H+V IP KS +LVQNDQYV+SEQ+IAEIRAG
Sbjct: 372 VHPTRTRHGQPAFLCYIDLHITIQSQDILHSVTIPSKSLILVQNDQYVESEQVIAEIRAG 431
Query: 333 TYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDT 392
T L+ KEK++KHI+S+S+GEMHWST++YH E+ Y N+ LPKTSHLWILS + +S
Sbjct: 432 TSALHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLWILSVSMCRSSI 491
Query: 393 VSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR-----------------LCPD---- 431
S SL KDQDQM+T+S R +++++VR PD
Sbjct: 492 ASFSLHKDQDQMNTYSFSVDGRYIFGLSMADDEVRHRLLDTFGKKDREILDYSTPDRIMS 551
Query: 432 --HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKN 489
H +F++P+I + +LLAKKRRNRF IP + +E+ IS+EIP G++ +N
Sbjct: 552 NGHWNFVYPSILQNNFDLLAKKRRNRFAIPLQYHQEQEKEPISCFGISIEIPFMGVLRRN 611
Query: 490 SILAYFDDPQYR--TQSSGIAKYK 511
+I+AYFDDP+Y+ + SGI K++
Sbjct: 612 TIVAYFDDPRYKKDKKGSGIVKFR 635
>RPC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1373
Score = 415 bits (1066), Expect = e-115
Identities = 294/969 (30%), Positives = 478/969 (48%), Gaps = 113/969 (11%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
++I RCI RNQDIG L IN+Q + I IR+P TC++ W+C+ CYG SP +GD+V
Sbjct: 255 LFIDKRCIAKRNQDIGSELAINIINYQKKAILIRSPLTCKSKQWLCQYCYGWSPCYGDMV 314
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG AE+VR+P NG F+E + TR+
Sbjct: 315 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRAPFNGIAFFSETNLQATRS 374
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPA++ D+ +TI+ +I H + IP S +L++ +QYVKS+Q++AE+RA L
Sbjct: 375 RHGHPAWISKEDIKITIQYEEIEHKLNIPANSLILIKTNQYVKSKQVLAEVRA--KIAPL 432
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE+I K+I+SD GE+HW + H SE+ YSN+H + T H+W++SGN S+ L
Sbjct: 433 KEQIEKYIYSDLSGEIHWGFPVRHTSEYIYSNLHTVQNTGHIWVVSGNIKNSNKNLLLFY 492
Query: 399 KDQD----------------------QMSTHSLPTAKRNTSNFLVSNNQVRLCPDHC--- 433
K D S+ +K+N +N + S + +
Sbjct: 493 KKGDYILKDFLNKKLNINFQVYNKKLNFYQKSIRNSKKNINNLINSTEFLNINSSAIFAT 552
Query: 434 -HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSIL 492
+ + ++ + N+ ++ N++ + + + E+N + I N+ +
Sbjct: 553 YRYKNTKMNENNPNIFSETNLNKYSLKKFYNFVLEKNQK-------------FISNNTKI 599
Query: 493 AYFDDPQYRTQSSGIAKYKTIGIH---SIFQKEDLIEYRGIREFKPKYQ-IKVDRFFFIP 548
A ++ ++ GI KY +I I S F ++ I+ K KY+ I F+IP
Sbjct: 600 ASSSIYKHHIENCGIIKYGSIQIKPFPSNFDQDLNTIKEKIKPLKLKYELINSGTIFWIP 659
Query: 549 QEVH-ILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKI-ELKIFSGDIHF 606
+ VH ++ SSI+V++ I T I GLV+++ KI E+ I G +
Sbjct: 660 EYVHTLVCSRSSILVQDGMFIEAGTEIFRGFFMPESGLVQIKSKTNKIHEITIVPGKLLD 719
Query: 607 PGEI-DKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDI 665
+I D + + P E + I K Y+ K+K +L+RP + I
Sbjct: 720 SIDIFDNLKKQKFFFYPGEEIIPGI-----KAEVLTYLYLFGVNKQKNKLLLRPAKEFFI 774
Query: 666 AD-SINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNED 724
N + L P +F ++++ + FI+Y +G+ +R I+LV+TCL+ N
Sbjct: 775 EKLRKNPINLIP--IFGTKKDIKIALFEFIVYEDGQQVRS--KGKIELVQTCLITN---I 827
Query: 725 EKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRINI 784
+K E A ++V L FL + + + N +++++
Sbjct: 828 KKGPYSENAKFFSIDVFFKNLRNRFL-------NFCFSNQTNFEKMLSKRNFHKNLYFCF 880
Query: 785 NPFFSIYKENI-----QQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYH 839
+ KEN+ + SL Q G +++L +N N++ + +S N Q + Y+
Sbjct: 881 KTLNNKNKENLANKKNKDSLIQNKGYLQLLETKNTINKNLLFVSRKNQIQ------ILYN 934
Query: 840 NGIKEEINQFKRNHKIPIKISLGPLGVAPQ-----------------IANFFS----FYH 878
KE++ + ++ KI + Q + NF+ F
Sbjct: 935 KITKEDLKENYKDINTISKIKKTKIYHTDQQVFTIQSFYLLNKNLGLLGNFYKNKLLFQF 994
Query: 879 LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP 938
+ +NKI + KK+L L+ + ++L+DE+ ++ N + + D
Sbjct: 995 IFDYNKIKTYKKDLSLDINTNLLKNKNWFLIDESNNFFQLKTRKNQNVKQKKIEKDI--- 1051
Query: 939 NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI 998
I+LG F +NV + T+ P +SGQ++ ++ RL PYLAT A I
Sbjct: 1052 --------RINLGNFFSQNVVLFNTRQLP--ESGQILYIEKKICVFRLCRPYLATKNAII 1101
Query: 999 HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER 1058
+G+Y +++ GD +T +YE+ ++ DI QGLPKVEQ+LE R ++++S NL+ WN
Sbjct: 1102 YGNYKQIITSGDNFITIVYERFKTRDIIQGLPKVEQLLEARPLNNLSSNLDFGFLDWNTD 1161
Query: 1059 ITGILGIPW 1067
I+ +LG PW
Sbjct: 1162 ISRLLGNPW 1170
>RPC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1224
Score = 350 bits (897), Expect = 2e-95
Identities = 183/359 (50%), Positives = 233/359 (63%), Gaps = 25/359 (6%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
+YI RCI RNQDIG+GL N+ IN +TQPI+IRTPFTC++ S IC+LCYGRS H L+
Sbjct: 270 VYINRRCIATRNQDIGVGLANQLINLRTQPIYIRTPFTCKSISRICQLCYGRSTTHSHLI 329
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG AE++R+P NGKI+FNEN YPTRT
Sbjct: 330 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHIRAPFNGKIEFNENLVYPTRT 389
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
R+GHPA+LC+ +L +TI+ D + N+ IPP+S LLVQNDQYV+SEQ+IAE+RA T +
Sbjct: 390 RNGHPAYLCHNNLSITIDGQDQVQNLTIPPQSLLLVQNDQYVESEQLIAEVRA--RTSSF 447
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RK+I+SD EGEMHWSTN+ H E+ NVH + +T +LWILSG + S V
Sbjct: 448 KEKVRKNIYSDLEGEMHWSTNVCHAPEYVQGNVHPILRTGYLWILSGGIYGSRVVPFPFH 507
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHP------------TIS----- 441
K QDQ+ ++ S+ V + R +C+ TIS
Sbjct: 508 KYQDQVYVQPFVAKHQSLSDSYVDQVEHRSGDSNCYEKEEQIFSYSETETDRTISNKHRD 567
Query: 442 ------PDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAY 494
P+ N+ KK+ NRFI+ E+ PD + IP GI+ +NSI Y
Sbjct: 568 SIYVFYPNNYNIKGKKQMNRFIVSLQCDKEWEKKIIPCPDAILRIPKSGILQRNSIFGY 626
Score = 251 bits (642), Expect = 6e-66
Identities = 167/427 (39%), Positives = 241/427 (56%), Gaps = 25/427 (5%)
Query: 663 YDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWN 722
+ I D N+ F DL +E DNL++++ I Y +G+ I+ + D SI LVRTC+ +W
Sbjct: 631 HGIPDGSNMTTPFSLDLSREGDNLQIQISYSISYEDGERIQVMSDISIPLVRTCIGFDW- 689
Query: 723 EDEKSSSIE-EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDR 781
E+ SIE EA S + V TN ++ ++I L+K ++ +R++ +S L+ +N D
Sbjct: 690 --EQIDSIESEAYVSLISVRTNKIVNNMVQISLMKYPPFFMGRRDNKTSPNLMFHNNLDH 747
Query: 782 ININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVK-YHN 840
N+ + Q +S+ G I L N +++ SF++LS S+ F++ FN+ K Y
Sbjct: 748 TNL-----LSSNGASQLISKHQGIICSLSNGEEDSGSFMVLSPSDYFRIVLFNDSKCYDT 802
Query: 841 GIKEEINQFKRNHKIPIKISL---GPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKF 897
G NQ N K P++ + G LG I N F H +T+ K+ S K ++ N F
Sbjct: 803 G-----NQ--SNRKDPMRKIIEFSGLLGNLHSITNRFPSSHFLTYKKVLSKKHSIFHNSF 855
Query: 898 KETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNW--DFIHPNYCEKTFPIISLGQFIC 955
TFQV KYY MDEN IY D NII N NW +CEKTFP++SLGQ I
Sbjct: 856 N-TFQVPKYYFMDENMIIYHFDPCRNIISNLLGPNWCSSSSESEFCEKTFPVVSLGQLIP 914
Query: 956 ENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTF 1015
E+V I +++ P +SGQ+I V + + IR A PYLAT AT+H HYG++L +GD L+T
Sbjct: 915 ESVWI--SEDEPLPESGQIIAVDEESLVIRSAKPYLATRKATVHSHYGKILDKGDTLITL 972
Query: 1016 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSR 1075
IYE+ +S DI QGLPKVEQ+ E R +SISMNL++ + W +T LG W IS
Sbjct: 973 IYERFKSSDIIQGLPKVEQLSEARLNNSISMNLKESFENWTGDMTRFLGSLWGLFISARI 1032
Query: 1076 KLLQDNI 1082
+ Q I
Sbjct: 1033 TMEQSQI 1039
>RPC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1209
Score = 342 bits (876), Expect = 4e-93
Identities = 177/359 (49%), Positives = 231/359 (64%), Gaps = 27/359 (7%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
+YI RCI RNQDIG+GL N+ N + +PI+IRTPFTC++ S IC+LCYGRS H L+
Sbjct: 270 VYINRRCIATRNQDIGVGLANQLRNIRPRPIYIRTPFTCKSISRICQLCYGRSTTHSHLI 329
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG AE++R+P NGKI+FNEN YPTRT
Sbjct: 330 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHIRAPFNGKIEFNENLVYPTRT 389
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
R+GHPA+LC+ +L +TI+ + + N+ IPP+S LLVQNDQYV+SEQIIAE+RA T +
Sbjct: 390 RNGHPAYLCHNNLSITIDGQNQVQNLTIPPQSLLLVQNDQYVESEQIIAEVRA--RTSSF 447
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RK+I+SD EGEMHWSTN+ H E+ + NVH + +T +LWILSG + S V
Sbjct: 448 KEKVRKNIYSDLEGEMHWSTNVCHAPEYVHGNVHSILRTGYLWILSGGIYGSGVVPFPFH 507
Query: 399 KDQDQMSTHSLPTAKRNTSNFL-----------------------VSNNQVRLCPDHCHF 435
K QDQ+ P ++T +++ + + +H
Sbjct: 508 KYQDQVDVQ--PFVAKHTDSYVDQVEHRSGDSNCYGKEEQIFSYSETETDRTISNEHRDS 565
Query: 436 MHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAY 494
++ T SP N+ KK+ NRFI+ + PD + IP GI+ NSI Y
Sbjct: 566 IYVTFSPKNYNMKGKKQMNRFIVSLQCDKEWGKRIIPCPDAILRIPKSGILQINSIFGY 624
Score = 251 bits (642), Expect = 6e-66
Identities = 168/425 (39%), Positives = 239/425 (55%), Gaps = 33/425 (7%)
Query: 663 YDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWN 722
+ I D N+ F DL +E DNL++++ N ILY +G+ I+ + DTSI LVRTCL +W
Sbjct: 629 HGIPDGPNMTTPFSLDLSREGDNLQIQISNSILYEDGERIQVMSDTSIPLVRTCLGFDW- 687
Query: 723 EDEKSSSIE-EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDR 781
E+ SIE EA S + V TN ++ ++I L+K ++ +R++ +SS L+ +N D
Sbjct: 688 --EQIDSIESEAYVSLISVRTNKIVNNMVQISLMKYPPFFMGRRDNKASSNLMFHNNLDH 745
Query: 782 ININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVK-YHN 840
N+ FS Q +S+ GTI L N +++ SF++LS S+CF++ FN+ K Y
Sbjct: 746 TNL---FS--SNGASQLISKHQGTICSLSNGEEDSGSFMVLSPSDCFRIVLFNDSKCYDT 800
Query: 841 GIKEEINQFKRNHKIPIKISL---GPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKF 897
G K N K P++ + G LG I + F IT K+ S K ++ N
Sbjct: 801 GNKS-------NRKDPMRKIIEFSGLLGHLHSITSRFPSSQFITDKKVLSKKHSIFHN-- 851
Query: 898 KETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICEN 957
Y MDEN RI D NII N NW +C+KTFP++SLGQ I E+
Sbjct: 852 ---------YFMDENMRISHFDPCRNIISNLLGPNWCSSSSEFCKKTFPVVSLGQLIPES 902
Query: 958 VCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIY 1017
V I +++ P +SGQ+I V + + IR A PYLAT AT+HGHYGE+L +GD L+T IY
Sbjct: 903 VWI--SEDEPLPESGQIIAVDEESLVIRSAKPYLATRKATVHGHYGEILDKGDTLITLIY 960
Query: 1018 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKL 1077
E+ +S DI QGLPKVEQ+ E R +SISMNL++ + W +T LG W IS +
Sbjct: 961 ERLKSSDIIQGLPKVEQLSEARLNNSISMNLKESFENWTGDMTRFLGSLWGLFISARITM 1020
Query: 1078 LQDNI 1082
Q I
Sbjct: 1021 EQSQI 1025
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.327 0.142 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,716,516
Number of Sequences: 164201
Number of extensions: 5646284
Number of successful extensions: 16730
Number of sequences better than 10.0: 223
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 16017
Number of HSP's gapped (non-prelim): 495
length of query: 1085
length of database: 59,974,054
effective HSP length: 121
effective length of query: 964
effective length of database: 40,105,733
effective search space: 38661926612
effective search space used: 38661926612
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0269b.9