BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0269b.10
(382 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YCF2_LOTJA (Q9B1K6) Protein ycf2 802 0.0
YCF2_TOBAC (P09976) Protein ycf2 680 0.0
YC2A_ATRBE (Q8S8V2) Protein ycf2 665 0.0
YC2B_ATRBE (Q8S8U1) Protein ycf2 664 0.0
YCF2_CALFE (Q7Y667) Protein ycf2 642 0.0
YCF2_ARATH (P56786) Protein ycf2 639 0.0
YCF2_AMBTC (P61241) Protein ycf2 621 e-178
YCF2_SPIOL (P08973) Protein ycf2 620 e-177
YCF2_EPIVI (P30072) Protein ycf2 569 e-162
YCF2_PELHO (Q32836) Protein ycf2 422 e-118
YCF2_OENHO (Q9MEF2) Protein ycf2 403 e-112
YCF2_PINTH (P41653) Protein ycf2 245 1e-64
YCF2_PINKO (Q85WV5) Protein ycf2 189 8e-48
YCF2_ANTFO (Q859W7) Protein ycf2 79 3e-14
YCF2_PHYPA (P61243) Protein ycf2 60 9e-09
YCF2_MARPO (P09975) Protein ycf2 50 1e-05
YCF2_PSINU (Q8WHW9) Protein ycf2 47 8e-05
T2C2_HERAU (P25259) Type II restriction enzyme HgiCII (EC 3.1.21... 35 0.32
I10H_EHV2 (Q89451) Viral interleukin-10 homolog precursor (vIL-10) 34 0.71
RO60_XENLA (P42700) 60-kDa SS-A/Ro ribonucleoprotein (60 kDa Ro ... 33 1.2
>YCF2_LOTJA (Q9B1K6) Protein ycf2
Length = 2298
Score = 802 bits (2072), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS
Sbjct: 939 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 998
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT
Sbjct: 999 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 1058
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK
Sbjct: 1059 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 1118
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL
Sbjct: 1119 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 1178
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT
Sbjct: 1179 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 1238
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS
Sbjct: 1239 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 1298
Query: 361 QWNLISEISSKCFHNLLLSEEI 382
QWNLISEISSKCFHNLLLSEEI
Sbjct: 1299 QWNLISEISSKCFHNLLLSEEI 1320
>YCF2_TOBAC (P09976) Protein ycf2
Length = 2280
Score = 680 bits (1754), Expect = 0.0
Identities = 334/382 (87%), Positives = 341/382 (88%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQKS+FLINGGTISPFLFNKIPKWMIDSF T NRRK FDN DSYFSMI
Sbjct: 934 KPFLLDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNPDSYFSMIF 993
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFY N R PF VEKA INN DFT
Sbjct: 994 HDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRFPFSVEKARINNSDFT 1053
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNK FSLC GKKKHAF RDTISPIES+V NI I NDFPQSGDE YNLYK
Sbjct: 1054 YGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYK 1113
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1114 SFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1173
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEK L SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1174 NFNSNMGLIHTPCSEKDLSSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1233
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLN IFLDTFSDLLPILSSSQKFV IFHDIMH S ISWRILQKK CL
Sbjct: 1234 YMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVPIFHDIMHGSGISWRILQKKLCLP 1293
Query: 361 QWNLISEISSKCFHNLLLSEEI 382
QWNLISEISSKC HNLLLSEE+
Sbjct: 1294 QWNLISEISSKCLHNLLLSEEM 1315
>YC2A_ATRBE (Q8S8V2) Protein ycf2
Length = 2291
Score = 665 bits (1717), Expect = 0.0
Identities = 332/385 (86%), Positives = 339/385 (87%), Gaps = 3/385 (0%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQKS+FLINGGTISPFLFNKIPKWMIDSF T NRRK FDN DS FSMI
Sbjct: 942 KPFLLDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNPDSNFSMIF 1001
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFY N R PF VEKA INN FT
Sbjct: 1002 HDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRFPFSVEKARINNSYFT 1061
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNK FSLC GKKKHAF RDTISPIES+V NI I NDFPQSGDE YNLYK
Sbjct: 1062 YGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYK 1121
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1122 SFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1181
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEK L SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1182 NFNSNMGLIHTPCSEKDLSSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1241
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLN IFLDTFSDLLPILSSSQKFVSIF DIMH S ISWRILQKK CL
Sbjct: 1242 YMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVSIFPDIMHGSGISWRILQKKLCLP 1301
Query: 361 QWNL---ISEISSKCFHNLLLSEEI 382
QWNL ISEISSKC HNLLLSEE+
Sbjct: 1302 QWNLISEISEISSKCLHNLLLSEEM 1326
>YC2B_ATRBE (Q8S8U1) Protein ycf2
Length = 2291
Score = 664 bits (1712), Expect = 0.0
Identities = 331/385 (85%), Positives = 338/385 (86%), Gaps = 3/385 (0%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQKS+FLINGGTISPFLFNKIPKWMIDSF T NRRK FDN DS FSMI
Sbjct: 942 KPFLLDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNPDSNFSMIF 1001
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFY N R PF VEKA INN FT
Sbjct: 1002 HDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRFPFSVEKARINNSYFT 1061
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNK FSLC G KKHAF RDTISPIES+V NI I NDFPQSGDE YNLYK
Sbjct: 1062 YGQFLNILFIRNKIFSLCVGNKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYK 1121
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1122 SFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1181
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEK L SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1182 NFNSNMGLIHTPCSEKDLSSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1241
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLN IFLDTFSDLLPILSSSQKFVSIF DIMH S ISWRILQKK CL
Sbjct: 1242 YMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVSIFPDIMHGSGISWRILQKKLCLP 1301
Query: 361 QWNL---ISEISSKCFHNLLLSEEI 382
QWNL ISEISSKC HNLLLSEE+
Sbjct: 1302 QWNLISEISEISSKCLHNLLLSEEM 1326
>YCF2_CALFE (Q7Y667) Protein ycf2
Length = 2287
Score = 642 bits (1656), Expect = 0.0
Identities = 322/384 (83%), Positives = 332/384 (85%), Gaps = 5/384 (1%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQ+S+FLINGGTISP NKIPKWMIDSF T NRRK F+NTDSYFSMIS
Sbjct: 931 KPFLLDDHDTSQRSKFLINGGTISP---NKIPKWMIDSFHTRNNRRKSFENTDSYFSMIS 987
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD DNWLNPVKPFHRSSLISSFYKANRLRFLN+ +HF FYCNK PFYVEK INNYD T
Sbjct: 988 HDRDNWLNPVKPFHRSSLISSFYKANRLRFLNHPHHFWFYCNKGFPFYVEKTRINNYDLT 1047
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNK FSLC GKKKH FLERDTISPIES+V +I I NDFPQSGDE YNLYK
Sbjct: 1048 YGQFLNILFIRNKIFSLCVGKKKHVFLERDTISPIESQVSDIFIPNDFPQSGDETYNLYK 1107
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFPIRSDPFV RAIYSIADIS TPLTE QIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1108 SFHFPIRSDPFVRRAIYSIADISGTPLTEEQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1167
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEKYLPS RKK CLKKC+EK QM RTFQRDS FS LSKWNLFQT
Sbjct: 1168 SFNSNMGLIHTPCSEKYLPSGKRKKRSLCLKKCVEKRQMDRTFQRDSAFSNLSKWNLFQT 1227
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKK-WC- 358
Y+PWFLTSTG KYLN LDTFSD LPILSSSQKFVSIFHDIMH SDISW I QKK W
Sbjct: 1228 YMPWFLTSTGCKYLNLTLLDTFSDPLPILSSSQKFVSIFHDIMHGSDISWPIPQKKLWAI 1287
Query: 359 LSQWNLISEISSKCFHNLLLSEEI 382
L QWNLISE SSKC NLLLSEE+
Sbjct: 1288 LPQWNLISESSSKCLQNLLLSEEM 1311
>YCF2_ARATH (P56786) Protein ycf2
Length = 2294
Score = 639 bits (1648), Expect = 0.0
Identities = 323/387 (83%), Positives = 336/387 (86%), Gaps = 8/387 (2%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDS-YFSMI 59
KPFLLDDH+TSQKS+FLINGGTISPFLFNKIPKWMIDSF T KNRRK FDNTDS YFS++
Sbjct: 945 KPFLLDDHNTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSAYFSIV 1004
Query: 60 SHDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDF 119
SHD+DNWLNPVKPF RSSLISSF KANRLRFLNN +HFCFYCNKR PFYVEKA +NN DF
Sbjct: 1005 SHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFYCNKRFPFYVEKARLNNSDF 1064
Query: 120 T--YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISP--IESRVFNILILNDFPQSGDEG 175
T YGQFL ILFI NK FS CGGKKKHAFLERDTISP IES+V NI I NDFPQSGDE
Sbjct: 1065 TFTYGQFLTILFIHNKTFSSCGGKKKHAFLERDTISPSSIESQVSNIFISNDFPQSGDER 1124
Query: 176 YNLYKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKN 235
YNLYKSFHFPIRSDP V RAIYSIADIS TPL EGQ VNFERTYCQ LSDMNL DSE K+
Sbjct: 1125 YNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKS 1184
Query: 236 LHQYLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKW 295
LHQYL FNSNMGLIH PCSEKYL RKK CLKKC++KGQM RTFQRDS FSTLSKW
Sbjct: 1185 LHQYLNFNSNMGLIHTPCSEKYL---QRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKW 1241
Query: 296 NLFQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQK 355
NLFQTY+PWF TSTGYKYLN IFLDTFSDLL ILSSSQKFVSIFHDIMH DISWRILQK
Sbjct: 1242 NLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSIFHDIMHGLDISWRILQK 1301
Query: 356 KWCLSQWNLISEISSKCFHNLLLSEEI 382
K CL Q NLISEISSK HNLLLSEE+
Sbjct: 1302 KLCLPQRNLISEISSKSLHNLLLSEEM 1328
>YCF2_AMBTC (P61241) Protein ycf2
Length = 2304
Score = 621 bits (1602), Expect = e-178
Identities = 311/386 (80%), Positives = 326/386 (83%), Gaps = 6/386 (1%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQ+S+ LINGGTI+ F FNKIPKWMIDSF T NR K F+NTDSYFSMIS
Sbjct: 930 KPFLLDDHDTSQRSKLLINGGTIARFWFNKIPKWMIDSFHTRNNRGKSFENTDSYFSMIS 989
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD DNWLNPVKPFHRSSLISSFYKAN+LRFLNN +HF FYCNKR PFY EK INNYD T
Sbjct: 990 HDRDNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFWFYCNKRFPFYAEKTRINNYDLT 1049
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISP--IESRVFNILILNDFPQSGDEGYNL 178
YGQFLNI FIRNK FSLC GKKKH FLERDTISP IES+V +I I NDFPQSGDE YNL
Sbjct: 1050 YGQFLNISFIRNKIFSLCVGKKKHVFLERDTISPSPIESQVSDIFIPNDFPQSGDETYNL 1109
Query: 179 YKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQ 238
YKSFHFP RSDPFV RAIYSIADIS TPLTE Q VNFE TYCQPLSD+NL DSEGKNLHQ
Sbjct: 1110 YKSFHFPTRSDPFVRRAIYSIADISGTPLTEEQRVNFEGTYCQPLSDLNLSDSEGKNLHQ 1169
Query: 239 YLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLF 298
YL FNSNMGLIH PCSEKYLPS RKK CL KC+EK QMYRTFQRDS FS +SKWNLF
Sbjct: 1170 YLSFNSNMGLIHTPCSEKYLPSGKRKKRNLCLNKCVEKRQMYRTFQRDSAFSNISKWNLF 1229
Query: 299 QTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKW- 357
QTY+PWFLTSTG KY+NFI LDTFSD LPILSSS KFVSIFHDIMH S +W I QKK
Sbjct: 1230 QTYMPWFLTSTGCKYINFILLDTFSDPLPILSSSHKFVSIFHDIMHGS--AWSIPQKKLR 1287
Query: 358 -CLSQWNLISEISSKCFHNLLLSEEI 382
L QWNLISEISSKC NLLLSEE+
Sbjct: 1288 AILPQWNLISEISSKCLQNLLLSEEM 1313
>YCF2_SPIOL (P08973) Protein ycf2
Length = 2131
Score = 620 bits (1599), Expect = e-177
Identities = 307/382 (80%), Positives = 323/382 (84%), Gaps = 16/382 (4%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
K FLLDDHDT QKS+FLINGGTISPFLFNKIPKWMIDSF T N K FDNTDSYFSMIS
Sbjct: 795 KAFLLDDHDTFQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNSGKSFDNTDSYFSMIS 854
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD++NWLNPVKPFHRSSLISSFYKAN+LRFLNN +HFCFYCNKR PFY+EKA INN DFT
Sbjct: 855 HDQNNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFCFYCNKRFPFYMEKARINNSDFT 914
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
Y QFLNILFI NK FSLC GKKKHAFLERDTISPIES+V NI + NDFP
Sbjct: 915 YRQFLNILFIHNKLFSLCVGKKKHAFLERDTISPIESQVSNIFLPNDFP----------- 963
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
IRSD V R IYSIADIS TPLTEGQ+V+FERTYCQPLSDMNL DSE KNLHQYL
Sbjct: 964 -----IRSDLLVRRTIYSIADISGTPLTEGQLVHFERTYCQPLSDMNLSDSEKKNLHQYL 1018
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMG I+ PCSEKYL SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1019 NFNSNMGFIYTPCSEKYLLSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1078
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLNF+FLDTFSDLLPILSSSQKF+SI HDIMH S ISWRILQKK CL
Sbjct: 1079 YMPWFLTSTGYKYLNFLFLDTFSDLLPILSSSQKFLSILHDIMHGSGISWRILQKKLCLP 1138
Query: 361 QWNLISEISSKCFHNLLLSEEI 382
WNLISEISSKC HNLLL EE+
Sbjct: 1139 PWNLISEISSKCLHNLLLPEEM 1160
>YCF2_EPIVI (P30072) Protein ycf2
Length = 2216
Score = 569 bits (1467), Expect = e-162
Identities = 290/384 (75%), Positives = 313/384 (80%), Gaps = 9/384 (2%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLL H TS+K + LI GG PFLFNKIP+ MIDSF TI NR K FDNTDSY SMI
Sbjct: 878 KPFLLGYHGTSRKLKLLITGGR--PFLFNKIPRCMIDSFHTINNRSKSFDNTDSYLSMIF 935
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
H++DNWLN VKPFHRSSLIS FYKANRL+FLNN ++FCFYCN RLPFYVEKA I+NY FT
Sbjct: 936 HNKDNWLNLVKPFHRSSLISYFYKANRLQFLNNPHNFCFYCNTRLPFYVEKAHIHNYYFT 995
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFL-ERDTISPIESRVFNILILNDFPQSGDEGYNLY 179
YGQFLNILFIRNK FSLC KKKHAF RDTISPIES+V I I +FPQSGDE YNL
Sbjct: 996 YGQFLNILFIRNKIFSLCVDKKKHAFWGGRDTISPIESQVSKIFIPKNFPQSGDETYNLS 1055
Query: 180 KSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQY 239
+ FHFP R DPFV IA+I TPLTEGQIVN RTYCQPLSDMNL DSEGKN HQY
Sbjct: 1056 QPFHFPSRYDPFVR----LIANIYGTPLTEGQIVNLGRTYCQPLSDMNLSDSEGKNFHQY 1111
Query: 240 LKFNSNMGLIHIPCSEKYLPSENRKKGIPCLK--KCLEKGQMYRTFQRDSVFSTLSKWNL 297
L FNSNMGLIH PCS+KYLPSE RKK C+ KC+EKGQMYRTFQR FSTLSKWNL
Sbjct: 1112 LNFNSNMGLIHTPCSDKYLPSEKRKKRSLCINKYKCVEKGQMYRTFQRKVAFSTLSKWNL 1171
Query: 298 FQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKW 357
FQTY+PWFLTS GYKY+N IFLDTFS+LL ILSSS+KFVSIF++IMH S ISWRI+ KK
Sbjct: 1172 FQTYMPWFLTSAGYKYINLIFLDTFSELLSILSSSKKFVSIFNNIMHGSGISWRIINKKR 1231
Query: 358 CLSQWNLISEISSKCFHNLLLSEE 381
CL QWNLISEISSKC HNLLLSEE
Sbjct: 1232 CLPQWNLISEISSKCLHNLLLSEE 1255
>YCF2_PELHO (Q32836) Protein ycf2
Length = 2109
Score = 422 bits (1085), Expect = e-118
Identities = 241/401 (60%), Positives = 268/401 (66%), Gaps = 51/401 (12%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KP LLDDH+TSQKS+ + GTI DNTDSYFS++
Sbjct: 654 KPCLLDDHETSQKSKIV---GTI--------------------------DNTDSYFSILF 684
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
DE+NW+NPVK F RSSLIS+FYKANRLRFLNN + F FYCNK PF VEKA N DF
Sbjct: 685 DDEENWMNPVKAFQRSSLISAFYKANRLRFLNNPHRFSFYCNKIFPFVVEKARFKNSDFL 744
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIES--------RVFNILILNDFPQSG 172
YGQFL FIR K FSLCG +KHAF ER T+ PIES +V ILI +DFPQSG
Sbjct: 745 YGQFLKTFFIRKKPFSLCG--EKHAFGERATLLPIESEVSKILIPQVSKILIPDDFPQSG 802
Query: 173 DEGYNLYKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSE 232
DE YNL KSFHFP RS P V RA+YSIADIS PLTEGQ+VN ERT QPLSD++L DSE
Sbjct: 803 DERYNLCKSFHFPTRSVPLVDRALYSIADISERPLTEGQMVNLERTSFQPLSDIHLSDSE 862
Query: 233 GKNLHQYLKFNSNMGLIHIPCSEKYLPSENRKKGI--PCLKKCLEKGQMYRTFQRDSVFS 290
KNLHQ L FNSNMGLIH P SEK LPSE RKK LKKC+EKGQM+RT +
Sbjct: 863 RKNLHQDLNFNSNMGLIHTPYSEKDLPSEKRKKRNLGRNLKKCVEKGQMFRTLLSKMYRT 922
Query: 291 TLSKWNLFQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSS--QKFVSIFHDIMH--RS 346
LSKWNLFQTY+PWFLTSTGYKYL +FLD FSDL+PILS Q VS+F I+ R
Sbjct: 923 LLSKWNLFQTYMPWFLTSTGYKYLTLLFLDLFSDLVPILSLGIRQNCVSLFDHILGDIRD 982
Query: 347 DI------SWRILQKKWCLSQWNLISEISSKCFHNLLLSEE 381
DI W+ILQ+KW L Q N I EIS C NL LS E
Sbjct: 983 DIRQGVIRPWQILQEKWVLPQRNRIREISRMCLRNLTLSAE 1023
>YCF2_OENHO (Q9MEF2) Protein ycf2
Length = 2280
Score = 403 bits (1035), Expect = e-112
Identities = 207/272 (76%), Positives = 219/272 (80%), Gaps = 16/272 (5%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KP LLDDH+T QKS+ L FNK P+ MIDSF T NR K + DSYFSMIS
Sbjct: 886 KPLLLDDHETFQKSKLL----------FNKKPEGMIDSFHTRNNRGK---SLDSYFSMIS 932
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN + F F+CNKR PFYV+ I N DFT
Sbjct: 933 HDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHDFGFFCNKRFPFYVD---IKNLDFT 989
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRN +FSLCG KKKHAFLERDTIS IES+V N+ I NDFPQSGDE YNLYK
Sbjct: 990 YGQFLNILFIRNTKFSLCGDKKKHAFLERDTISSIESQVSNLFIPNDFPQSGDETYNLYK 1049
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1050 SFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1109
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKK 272
FNSNMGLIH PCSEK SE RKK P +K
Sbjct: 1110 NFNSNMGLIHTPCSEKEKKSEKRKKKKPEKRK 1141
Score = 124 bits (311), Expect = 4e-28
Identities = 70/129 (54%), Positives = 84/129 (64%), Gaps = 2/129 (1%)
Query: 255 EKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQTYI-PWFLTSTGYKY 313
EK KK LK+ +EK QM R Q + V LS WNLF+TY+ P+ LTSTGY +
Sbjct: 1182 EKKPEKRKEKKQSLYLKQLVEKVQMDRALQGERVSLILSNWNLFKTYVMPFSLTSTGYNF 1241
Query: 314 LNFIFLDTF-SDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLSQWNLISEISSKC 372
+ +FLDT S ++P+L SS KFVSI + I ISWRILQKK CL QWN IS IS+KC
Sbjct: 1242 VKLMFLDTLGSYVMPLLRSSPKFVSICYAISDPCGISWRILQKKLCLLQWNWISAISNKC 1301
Query: 373 FHNLLLSEE 381
FH L LSEE
Sbjct: 1302 FHKLFLSEE 1310
>YCF2_PINTH (P41653) Protein ycf2
Length = 2054
Score = 245 bits (626), Expect = 1e-64
Identities = 172/418 (41%), Positives = 233/418 (55%), Gaps = 54/418 (12%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIP--KWMIDSFDTIKNRRKFFDNTDSYFSM 58
K FLL DH+ SQ+S+ LI+ GTI+PF+ NKIP +ID FD NR + FDNT YFS
Sbjct: 689 KTFLLYDHNLSQRSKLLIDEGTIAPFVTNKIPINPLIIDFFDNENNRMESFDNT--YFST 746
Query: 59 ISHDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYD 118
IS+D DNWLNPVK +SSLI+SF+ AN L+F + +H RLP +++ I +
Sbjct: 747 ISNDRDNWLNPVKLSDQSSLIASFHGANTLQFFDYLHHTRPNYRNRLPSDMKRFYIKRNN 806
Query: 119 FTYGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDF--PQSGDEG- 175
FTYGQ N+L I N SL G+ E++TIS I+S+V NIL+ +SGD+
Sbjct: 807 FTYGQLFNLLIIHNNLSSLPIGEIGPVHSEKETISFIKSQVSNILLPKYLKRKRSGDQTF 866
Query: 176 ---YNLYKSFHFPIRSDPFVH--RAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPD 230
Y+LY+SF+ R +PFV R + SI +IS TPLT+ QIVNFE+ +CQP D
Sbjct: 867 VLIYDLYRSFNLLTRLNPFVREKRYLSSIEEISTTPLTKEQIVNFEKNFCQPF--FKRSD 924
Query: 231 SEGKNLHQYLK--FNSNMGLIHIPCSEKYLPSE---NRKKGI----------PCLKKCL- 274
SE N Q K F+SN+GLI + L SE N+ + I CLK +
Sbjct: 925 SEENNFDQCFKRGFSSNVGLIQTRSYQDDLLSEMFSNKNEEIFPRIQDWFVTECLKNKIV 984
Query: 275 ---------------EKGQMYRTFQRDSVFSTLSKWNLFQTYIPWFLTSTGYKYLNFIFL 319
E+ +YR Q DS+F SKW+LF+TY+PWF TS KY+ + L
Sbjct: 985 NEDIDGRSTLSNSSKEEQNIYRISQIDSIF---SKWDLFKTYMPWFFTSAWCKYIENMLL 1041
Query: 320 DTFSDLLPILSSSQKFVSIF----HDIMHRSDISWRILQKKWCLSQWNLISEISSKCF 373
DT S++L L S FVSI H+I+ + +I W + W Q L + + +K F
Sbjct: 1042 DTLSEIL--LHGSNPFVSILQNIKHNILLKRNILWELSHPLWEPIQCKLRTNLINKFF 1097
>YCF2_PINKO (Q85WV5) Protein ycf2
Length = 1320
Score = 189 bits (481), Expect = 8e-48
Identities = 141/380 (37%), Positives = 193/380 (50%), Gaps = 67/380 (17%)
Query: 49 FDNTDSYFSMISHDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFY 108
FDNTD FS IS+D +NWLNPVK +SSL +SF+ AN L+F + +H KRLP
Sbjct: 4 FDNTD--FSTISNDRENWLNPVKLSDQSSLRASFHGANTLQFFDYLHHPRPNYRKRLPSD 61
Query: 109 VEKACINNYDFTYGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILN-- 166
+++ I + TYGQ N+L I N SL G+ E++TIS I+S+V NI +
Sbjct: 62 MKRIYIKRKNLTYGQLFNLLLIHNNISSLLIGEIGPVHSEKETISLIKSQVSNIFLPKYL 121
Query: 167 DFPQSGDEG----YNLYKSFHFPIRSDPFVH--RAIYSIADISVTPLTEGQIVNFERTYC 220
+SG++ Y+LY+SF+ + +PFV R I SI +IS TPLT+ QIVN E+T+C
Sbjct: 122 QRKRSGEQPFVLIYDLYRSFNLLTQLNPFVRDKRYISSIEEISTTPLTKEQIVNLEKTFC 181
Query: 221 QPLSDMNLPDSEGKNLHQYLK--FNSNMGLIHIPCSEKYLPS------------------ 260
QP N DSE NL + LK F+SN+GLI + L S
Sbjct: 182 QPF--FNRSDSEENNLDKCLKRGFSSNVGLIQTRSYQDDLLSEIFSNKNQEMFHRIQDWF 239
Query: 261 --------------------------ENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSK 294
E + K P + +K +MYR Q DS+ LSK
Sbjct: 240 VTKSFKNIIGNEGIDGRSTLSNSSKEEQKIKPSPHFNEPAKKQEMYRISQIDSI---LSK 296
Query: 295 WNLFQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRIL- 353
W+LF+TY+PWF TS KYL + L T ++L L S FVSI DI H + W IL
Sbjct: 297 WDLFKTYMPWFFTSAWCKYLENMLLYTLPEIL--LHGSNPFVSILQDIKHNIMLKWNILW 354
Query: 354 ---QKKWCLSQWNLISEISS 370
W +W L + +++
Sbjct: 355 ELSHPLWEPIKWKLRTNLTN 374
>YCF2_ANTFO (Q859W7) Protein ycf2
Length = 2392
Score = 78.6 bits (192), Expect = 3e-14
Identities = 91/387 (23%), Positives = 159/387 (40%), Gaps = 61/387 (15%)
Query: 11 SQKSRFLINGGTISPFLFNK--IPKWMIDSFDTIKNRRKFFDNTDSYFSM-ISHDEDNWL 67
S+ S LI + NK I +I F+ KN F + FS+ I + +N
Sbjct: 982 SRDSEKLIKNKLLPESFLNKNLIKNIIISLFNNEKNHDIFREFPRKTFSLWIYKNRNNGF 1041
Query: 68 NPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFTYGQFLNI 127
N + F ++ L+ +F+ N + FL+ + F F +KRLPF++++ I NYD TY +FL I
Sbjct: 1042 NSINNFQKN-LMMNFHNTNTIEFLDYLHDFHFRYDKRLPFFMKEIHIKNYDSTYNKFLRI 1100
Query: 128 LFIRNKRFSLCGGKKKHAFLER--DTISPIESRVFNILILNDFPQSGDEGY-----NLYK 180
L I + SL K K F + D I+ +VFN + N ++ + + +LYK
Sbjct: 1101 LPIYSNLRSLSINKIKPFFFQSRIDITLSIQLQVFNDSLSNYLGRTCNYIFTSFTNHLYK 1160
Query: 181 SFHFPIRSDPFVHRAIYS---------------IADISVTPLTE---GQIVNFERTYCQP 222
+ I+ + +++ S I ++ +T E G++ + Y +
Sbjct: 1161 LLNLLIKINSSIYKETDSCSIQKFLAMTPSGPTILNLKITHYDEFFLGELTSNFNGYFEF 1220
Query: 223 LSDMNLPDSE-----------------GKNLHQYLKFNSNMGLIHIPCSEKYLPSENRKK 265
S+ NL +E KN + + +++ + KY+
Sbjct: 1221 SSEPNLSHTEIQSYKNELLSEFLIEFRNKNNRKLQWIKESFLKLNLKENFKYVIGGESID 1280
Query: 266 GIPCLKKCLEKGQMYRTFQRDSVFSTLSK---------------WNLFQTYIPWFLTSTG 310
I EK + + S+ K WN FQ Y WF T
Sbjct: 1281 RISINLDFYEKNKNILPYPSLSITDFFDKDDKIKVSKKLYFLEKWNFFQNYTSWFFTFEW 1340
Query: 311 YKYLNFIFLDTFSDLLPILSSSQKFVS 337
++Y + I L+TF ++L ++ K++S
Sbjct: 1341 WRYFSNIPLETFPEVLLNITDQSKYIS 1367
>YCF2_PHYPA (P61243) Protein ycf2
Length = 2259
Score = 60.1 bits (144), Expect = 9e-09
Identities = 80/372 (21%), Positives = 164/372 (43%), Gaps = 51/372 (13%)
Query: 5 LDDHDTSQKSRFLINGGTISPFLFNKI--PKWMIDSFDTIKNRRKFFDNTDSYFSMISHD 62
L++ + Q+ +F I F F+KI K++I+ F+ + + F+N + FS+I +
Sbjct: 916 LNETNLVQQIKFNIYYKLKIHFYFDKILTTKFLINYFNNNQIYLESFNN--NIFSLILQN 973
Query: 63 EDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFTYG 122
+ ++ N ++ + L S F KA+ + ++ Y+ K+L FY++K N +Y
Sbjct: 974 QKSYFNSIQMSDKILLNSQFCKADTSKLVSFLYYSDLNYKKKLNFYLKKKKSN---LSYL 1030
Query: 123 QFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEG------Y 176
+ + I I+ K+ +L + + S IE +++ + Q +E +
Sbjct: 1031 ELIKIFSIKKKK-TLSTNELTFFSKILNENSNIELKIYKTFLFEKLEQFNNENLLFIHNF 1089
Query: 177 NLYKSFHFPIRSDPFVHRAIYSIADISVT----------PLTEGQ-------IVNFERTY 219
NL K + + +P Y +IS+ P+ + + +
Sbjct: 1090 NLNKLANSFVSFNPIFSTKKYLEKNISLQKSLKKNNDFYPIDSSENYLLSEFFIKIQNEN 1149
Query: 220 CQPLSDMNL-----PDSEGKNLHQYLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLK--- 271
+ ++ +N +SE ++ LK N+N ++K+ N+K+ + K
Sbjct: 1150 TRIINKINKLFIINSNSEKFLINNILKKNTN--------NKKFNSETNKKRILSFSKNSI 1201
Query: 272 KCLEKGQMYRTFQRDSVFSTLSKWNLFQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSS 331
K + + + ++ F+ S LS +LF+ YIPWF T +KY +FL+ + ++ L+
Sbjct: 1202 KLIPQTERFKIFKNSSFSLKLS--SLFEKYIPWFFTFKWWKYFQNLFLNLYLEI--SLNI 1257
Query: 332 SQKFVSIFHDIM 343
S +F I I+
Sbjct: 1258 SDQFYYILPTIL 1269
>YCF2_MARPO (P09975) Protein ycf2
Length = 2136
Score = 50.1 bits (118), Expect = 1e-05
Identities = 92/383 (24%), Positives = 162/383 (42%), Gaps = 46/383 (12%)
Query: 13 KSRFLINGGTISPFLFN--KIPKWMIDSFDTIKNR---RKFFDNTDSYFSMISHDEDNWL 67
K+ + IN + F FN + + ++ F + N +FF Y I D++
Sbjct: 803 KNSYFINENLTTTFSFNDKEFNIFFLELFISEINNDFLMRFFKKYLYY--RIYKDKEILF 860
Query: 68 NPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFTYGQFLNI 127
NP++ +R L + F K L F++ N R F++EK I N + Y + L I
Sbjct: 861 NPIE--NRQLLQNFFEKTKILTFIDFLQDPELNYNNRFIFHLEKKTIKNNNLLYLRLLKI 918
Query: 128 LFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYKSFHFPIR 187
F+++KR L + K +F+E+ I+S++ N+L++ + + D +N FHF +
Sbjct: 919 -FLKDKRNFLLINEIK-SFIEKKNNLFIKSQLSNVLLVKNSYKFFDNIFN----FHFLKQ 972
Query: 188 SDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYLKF----- 242
+ + +I + + ++TY L ++NL +S K ++ F
Sbjct: 973 KEKNI--------EIILNNQNYFEKSLLKKTY---LKNLNLNNSYSKFSYKIFIFQLLNI 1021
Query: 243 -NSNMGLIHIPCSEKYLPSENR----KKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNL 297
N N SE S+N + I C K Y+ ++ + K NL
Sbjct: 1022 LNKNNYKTFQWISELIFYSKNLNYKIQNKIEKNNYCYNKNISYKK-KKIKTVNFFEKNNL 1080
Query: 298 FQTYIPWFLTSTGYKYLNFIFL----DTFSDLLPILSSSQKFVSIFHDI---MHRSDISW 350
FQT WF T ++Y +I L +TF + +L +K I ++ + IS
Sbjct: 1081 FQTNNSWFFTLEWWEYNTYILLQIIQETFFQITDVLEYFKKKKIIEKNLKFFLKSKKISL 1140
Query: 351 RILQKKWCLSQWNL--ISEISSK 371
+ L +WNL +EI+ K
Sbjct: 1141 KTLSFHNFKLKWNLRFFNEINYK 1163
>YCF2_PSINU (Q8WHW9) Protein ycf2
Length = 2313
Score = 47.0 bits (110), Expect = 8e-05
Identities = 66/326 (20%), Positives = 136/326 (41%), Gaps = 65/326 (19%)
Query: 27 LFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMISHDEDNWLNPVKP----------FHRS 76
+ N +P+ +I+ F + R+ F ++F + SH + N P HR
Sbjct: 1049 IINDLPR-LINGFRSFIRRKGFCLEGTNFFQIKSHLFNKIPNKEYPHSILTQTIQILHRF 1107
Query: 77 SLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFTYGQFLNILFIRNKRFS 136
LI F + +L+ L+ +N +D +FLN IR + +
Sbjct: 1108 YLIKEFGSSIQLKSLSTEQ------------------VNLFDLQE-RFLNSSSIRKQLVN 1148
Query: 137 LCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNL-YKSFHFPIRSDPFVHRA 195
+ L+ D + + + NI + Q+G G + KS+H + +++
Sbjct: 1149 IGVSDYWQPLLDSDPTN--DFHLMNISTKDQLNQNGGSGSIIDEKSYH-----NDYLYSK 1201
Query: 196 IYSIADISVTPLTEGQIVNFERTYCQPLSDMNL----PDSEGKNLHQYLKFNSNMGLIHI 251
+ G + ++ + + ++++ DS+ ++L ++++FN ++ I++
Sbjct: 1202 FF------------GNLEEYDMLFRLKIPELSIHFIPDDSKIESLEKHIEFNQDIKNIYV 1249
Query: 252 PCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQTYIPWFLTSTGY 311
+K + N L + E+ ++ + V + KW F YIPWF T +
Sbjct: 1250 ---DKNIFRSN------LLMRFNERLRVINILELLRVSTIAKKWLFFHEYIPWFFTIEWW 1300
Query: 312 KYLNFIFLDTFSDLLPILSSSQKFVS 337
KY+N +TFS+ L L+ S +++S
Sbjct: 1301 KYINSAVPNTFSETL--LNISDQWIS 1324
>T2C2_HERAU (P25259) Type II restriction enzyme HgiCII (EC
3.1.21.4) (Endonuclease HgiCII) (R.HgiCII)
Length = 273
Score = 35.0 bits (79), Expect = 0.32
Identities = 25/72 (34%), Positives = 37/72 (50%), Gaps = 12/72 (16%)
Query: 22 TISPFLFNKIPKWMIDSFD------TIKNRRKFFDNTDSYFSMISHDEDNWLNPVKPFHR 75
+I+P NKI ++ D + +N R+F D DSY + IS D D +KPFH
Sbjct: 2 SINPITRNKIKDYLNGFIDQQLAVYSQRNLREFHD-VDSYLAAISSDGD-----LKPFHA 55
Query: 76 SSLISSFYKANR 87
S + S+ + NR
Sbjct: 56 SIIPSAIMRLNR 67
>I10H_EHV2 (Q89451) Viral interleukin-10 homolog precursor (vIL-10)
Length = 179
Score = 33.9 bits (76), Expect = 0.71
Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 194 RAIYSIADISVTPLTEGQIVNFERTY--CQPLSDMN-------LPDSEGKNLHQYLKFNS 244
+ + + D L +G ++ + Y CQ LS+M +P +E + Q +
Sbjct: 52 KTFFQMKDQLDNMLLDGSLLEDFKGYLGCQALSEMIQFYLEEVMPQAENHSTDQEKDKVN 111
Query: 245 NMG------LIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLF 298
++G + + ++LP EN+ K + +K K Q V+ +S++++F
Sbjct: 112 SLGEKLKTLRVRLRRCHRFLPCENKSKAVEQVKSAFSK------LQEKGVYKAMSEFDIF 165
Query: 299 QTYIPWFLTS 308
YI ++T+
Sbjct: 166 INYIEAYMTT 175
>RO60_XENLA (P42700) 60-kDa SS-A/Ro ribonucleoprotein (60 kDa Ro
protein) (60 kDa ribonucleoprotein Ro) (RoRNP)
Length = 538
Score = 33.1 bits (74), Expect = 1.2
Identities = 28/85 (32%), Positives = 37/85 (42%), Gaps = 13/85 (15%)
Query: 206 PLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYLKFNSNMGLIHIPCSEKYLPSENRKK 265
PL E Q+ N E Y +SDMN L ++L F S G +I EK L EN +
Sbjct: 10 PLNEKQVPNSEGCYVWQVSDMN-------RLRRFLCFGSEGGTYYI--EEKKLGQENAE- 59
Query: 266 GIPCLKKCLEKGQMYRTFQRDSVFS 290
L + +E G+ Q FS
Sbjct: 60 ---ALLRLIEDGKGCEVVQEIKTFS 81
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.141 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,756,368
Number of Sequences: 164201
Number of extensions: 2099371
Number of successful extensions: 5326
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5255
Number of HSP's gapped (non-prelim): 56
length of query: 382
length of database: 59,974,054
effective HSP length: 112
effective length of query: 270
effective length of database: 41,583,542
effective search space: 11227556340
effective search space used: 11227556340
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0269b.10