BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0266.20
(284 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CLPA_PEA (P35100) ATP-dependent Clp protease ATP-binding subunit... 532 e-151
CLAB_LYCES (P31542) ATP-dependent Clp protease ATP-binding subun... 515 e-146
CLAA_LYCES (P31541) ATP-dependent Clp protease ATP-binding subun... 515 e-146
CLPA_BRANA (P46523) ATP-dependent Clp protease ATP-binding subun... 483 e-136
CLPC_PORPU (P51332) ATP-dependent Clp protease ATP-binding subun... 425 e-119
CLPC_GUITH (O78410) ATP-dependent Clp protease ATP-binding subun... 424 e-119
CLPC_CYACA (Q9TM05) ATP-dependent Clp protease ATP-binding subun... 416 e-116
ERD1_ARATH (P42762) ERD1 protein, chloroplast precursor 334 2e-91
CLPB_THETH (Q9RA63) Chaperone clpB 323 3e-88
CLPB_THET2 (Q72IK9) Chaperone clpB 323 3e-88
CLPB_OCEIH (Q8EU05) Chaperone clpB 321 1e-87
CLPC_ODOSI (P49574) ATP-dependent Clp protease ATP-binding subun... 317 2e-86
CLPC_BACSU (P37571) Negative regulator of genetic competence clp... 310 3e-84
CLB1_SYNEL (Q8DJ40) Chaperone clpB 1 309 4e-84
CLB1_SYNP7 (P53533) Chaperone clpB 1 308 7e-84
CLPB_CLOPE (Q8XKG8) Chaperone clpB 306 4e-83
CLPB_GEOSL (Q74FF1) Chaperone clpB 303 4e-82
CLPB_BACAN (Q81TT4) Chaperone clpB 300 3e-81
CLPB_DEIRA (Q9RVI3) Chaperone clpB 299 5e-81
CLPB_BACCR (Q81GM5) Chaperone clpB 299 5e-81
>CLPA_PEA (P35100) ATP-dependent Clp protease ATP-binding subunit
clpA homolog, chloroplast precursor
Length = 922
Score = 532 bits (1371), Expect = e-151
Identities = 271/283 (95%), Positives = 277/283 (97%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 638 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 697
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 698 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 757
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 758 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 817
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEVF RLKTKEI+L VTERFRDRVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 818 LEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDS 877
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEAL 283
MAEKMLA EIKEGDSVI+D DSDGKVIVLNGSSG PESLPEAL
Sbjct: 878 MAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEAL 920
>CLAB_LYCES (P31542) ATP-dependent Clp protease ATP-binding subunit
clpA homolog CD4B, chloroplast precursor
Length = 923
Score = 515 bits (1327), Expect = e-146
Identities = 263/285 (92%), Positives = 272/285 (95%), Gaps = 1/285 (0%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 638 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 697
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 698 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 757
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLD DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 758 VGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 817
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEVF+RLK KEI+L VTERFRDRVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 818 LEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDS 877
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAP-ESLPEALP 284
MAEKMLA EIKEGDSVI+D DSDG V VLNGSSG P + PE +P
Sbjct: 878 MAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIP 922
>CLAA_LYCES (P31541) ATP-dependent Clp protease ATP-binding subunit
clpA homolog CD4A, chloroplast precursor
Length = 926
Score = 515 bits (1326), Expect = e-146
Identities = 263/284 (92%), Positives = 274/284 (95%), Gaps = 1/284 (0%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK+LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 641 SFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 700
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 701 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 760
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRL EMIVFRQLTK
Sbjct: 761 VGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTK 820
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEVF RLK KEI+L VTERFRDRVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 821 LEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDS 880
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAP-ESLPEAL 283
MAEKMLAGEIKEGDSVI+D DSDG V VLNG+SGAP +S PE +
Sbjct: 881 MAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSAPEPI 924
>CLPA_BRANA (P46523) ATP-dependent Clp protease ATP-binding subunit
clpA homolog, chloroplast precursor (Fragment)
Length = 874
Score = 483 bits (1243), Expect = e-136
Identities = 248/288 (86%), Positives = 267/288 (92%), Gaps = 5/288 (1%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF GPTGVGKSELAK LA+YYFG EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE
Sbjct: 586 SFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEP 645
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT+SKGRTVDFKNTLLIMTSN
Sbjct: 646 PQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTNSKGRTVDFKNTLLIMTSN 705
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLDY EKDSSYNRIKSLVT+ELKQYFRPEFLNRLDEMI+FRQLTK
Sbjct: 706 VGSSVIEKGGRRIGFDLDY-EKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTK 764
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADI+L+E+F+RLK KE++L VTERF++RVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 765 LEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDS 824
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAP----ESLPEALP 284
M EKMLA EIKEGDSVI+D DS+GKV VLNG SG P E ++LP
Sbjct: 825 MEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLP 872
>CLPC_PORPU (P51332) ATP-dependent Clp protease ATP-binding subunit
clpA homolog
Length = 821
Score = 425 bits (1093), Expect = e-119
Identities = 204/271 (75%), Positives = 247/271 (90%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGK+EL K LASY+FGSE +MIRLDMSE+MERHTVSKLIGSPPGYVGY+EG
Sbjct: 544 SFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEG 603
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
G LTEAVR++PYTV+LFDEIEKAHPD+FN++LQILEDGRLTD+KGRT+DFKNTLLIMTSN
Sbjct: 604 GYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSN 663
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS VIEKGG +GF+L D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFRQLTK
Sbjct: 664 IGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTK 723
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
EV+EIA++ML EVF R+K ++I L+VTERF++R+VEEGY+PSYGARPLRRA+MRLLEDS
Sbjct: 724 DEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDS 783
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNG 271
+AE++L+G+IK GDS ++D ++G+V VL G
Sbjct: 784 LAEEVLSGKIKAGDSPVVDVTNEGEVKVLLG 814
>CLPC_GUITH (O78410) ATP-dependent Clp protease ATP-binding subunit
clpA homolog
Length = 819
Score = 424 bits (1091), Expect = e-119
Identities = 210/271 (77%), Positives = 238/271 (87%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGK+EL K LASY+FGSEEAM+RLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 541 SFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEG 600
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTE+VRRRPYTVVLFDEIEK HPDVFN++LQILEDGRLTDSKGRTVDFKNTLLI+TSN
Sbjct: 601 GQLTESVRRRPYTVVLFDEIEKGHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLILTSN 660
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGS VIEKGG +GFDL D+ +S Y RIK+LV EELKQYFRPEFLNRLDE+IVFRQLTK
Sbjct: 661 VGSKVIEKGGGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTK 720
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
EV EIA+IMLKEVF R+ K I L VT RF+ ++ EGY+P YGARPLRRA+MRLLED+
Sbjct: 721 DEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRLLEDT 780
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNG 271
++E+ LA +IKEGD+ ++D D DGKV VL G
Sbjct: 781 LSEEFLAEKIKEGDTAVVDVDDDGKVKVLLG 811
>CLPC_CYACA (Q9TM05) ATP-dependent Clp protease ATP-binding subunit
clpA homolog
Length = 854
Score = 416 bits (1069), Expect = e-116
Identities = 201/273 (73%), Positives = 248/273 (90%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGK+EL K +ASY+FGSEEAM+RLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 574 SFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEG 633
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVR+RPYTVVLFDEIEKAHPDVFN++LQILEDGRLTDSKGRT+DFKNTLLIMTSN
Sbjct: 634 GQLTEAVRKRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDSKGRTIDFKNTLLIMTSN 693
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS VIEK G +GF+L+ + ++ Y+R+++LV EELKQYFRPEFLNR+DE+IVFRQLTK
Sbjct: 694 IGSKVIEKKGGGLGFELEENIEELQYSRMRNLVNEELKQYFRPEFLNRVDEIIVFRQLTK 753
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
EV++IA IML+E+F+R+K + I L VTERF++ ++EEGY+PSYGARPLRRA++RLLEDS
Sbjct: 754 DEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDS 813
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSS 273
+AE++L+G+IKEGD+ +ID D + +V +L G+S
Sbjct: 814 LAEEVLSGKIKEGDNAMIDVDENKQVKILLGNS 846
>ERD1_ARATH (P42762) ERD1 protein, chloroplast precursor
Length = 945
Score = 334 bits (856), Expect = 2e-91
Identities = 161/265 (60%), Positives = 207/265 (77%), Gaps = 1/265 (0%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
+ +F GPTGVGK+EL K LA+ YFGSEE+M+RLDMSE+MERHTVSKLIGSPPGYVG+ EG
Sbjct: 659 AMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEYMERHTVSKLIGSPPGYVGFEEG 718
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
G LTEA+RRRP+TVVLFDEIEKAHPD+FN++LQ+ EDG LTDS+GR V FKN L+IMTSN
Sbjct: 719 GMLTEAIRRRPFTVVLFDEIEKAHPDIFNILLQLFEDGHLTDSQGRRVSFKNALIIMTSN 778
Query: 121 VGSSVIEKGGR-KIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 179
VGS I KG IGF LD DE+ +SY +K+LV EELK YFRPE LNR+DE+++FRQL
Sbjct: 779 VGSLAIAKGRHGSIGFILDDDEEAASYTGMKALVVEELKNYFRPELLNRIDEIVIFRQLE 838
Query: 180 KLEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLED 239
K ++ EI ++ML+++ RL + L V+E ++ + ++GYDP+YGARPLRR + ++ED
Sbjct: 839 KAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICKQGYDPAYGARPLRRTVTEIVED 898
Query: 240 SMAEKMLAGEIKEGDSVIIDADSDG 264
++E LAG K GD+ + D G
Sbjct: 899 PLSEAFLAGSFKPGDTAFVVLDDTG 923
>CLPB_THETH (Q9RA63) Chaperone clpB
Length = 854
Score = 323 bits (828), Expect = 3e-88
Identities = 163/269 (60%), Positives = 208/269 (76%), Gaps = 10/269 (3%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SF+F GPTGVGK+ELAKTLA+ F +EEAMIR+DM+E+ME+H VS+LIG+PPGYVGY EG
Sbjct: 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG 649
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPY+V+LFDEIEKAHPDVFN++LQIL+DGRLTDS GRTVDF+NT++I+TSN
Sbjct: 650 GQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS +I +G +K Y RI+ V + L+Q+FRPEFLNRLDE++VFR LTK
Sbjct: 710 LGSPLILEG----------LQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTK 759
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
++++I +I L + RL K I L +TE +D + E GYDP +GARPLRR I R LE
Sbjct: 760 EQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVL 269
+A+K+LAGE+KEGD V +D G V +
Sbjct: 820 LAQKILAGEVKEGDRVQVDVGPAGLVFAV 848
>CLPB_THET2 (Q72IK9) Chaperone clpB
Length = 854
Score = 323 bits (828), Expect = 3e-88
Identities = 163/269 (60%), Positives = 208/269 (76%), Gaps = 10/269 (3%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SF+F GPTGVGK+ELAKTLA+ F +EEAMIR+DM+E+ME+H VS+LIG+PPGYVGY EG
Sbjct: 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG 649
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPY+V+LFDEIEKAHPDVFN++LQIL+DGRLTDS GRTVDF+NT++I+TSN
Sbjct: 650 GQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS +I +G +K Y RI+ V + L+Q+FRPEFLNRLDE++VFR LTK
Sbjct: 710 LGSPLILEG----------LQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTK 759
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
++++I +I L + RL K I L +TE +D + E GYDP +GARPLRR I R LE
Sbjct: 760 EQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVL 269
+A+K+LAGE+KEGD V +D G V +
Sbjct: 820 LAQKILAGEVKEGDRVQVDVGPAGLVFAV 848
>CLPB_OCEIH (Q8EU05) Chaperone clpB
Length = 809
Score = 321 bits (822), Expect = 1e-87
Identities = 158/269 (58%), Positives = 212/269 (78%), Gaps = 3/269 (1%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF GPTGVGK+ELA+ LA F E+AMIR+DMSE+MERH S+L+GSPPGYVGY EG
Sbjct: 543 SFIFLGPTGVGKTELARALAEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGYVGYDEG 602
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTE VRR+PY+VVL DE+EKAHP+VFN++LQ+LEDGRLTDSKGR VDF+NT++IMTSN
Sbjct: 603 GQLTEKVRRKPYSVVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSN 662
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VG+S + K + +GF LD +EKD Y +KS V EELK+ FRPEFLNR+DE IVF L K
Sbjct: 663 VGASEL-KRNKYVGFALDNEEKD--YKDMKSKVIEELKKAFRPEFLNRIDETIVFHSLEK 719
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
+K+I +M++++ RLK +++ LS+T++ +++ EG+DP YGARPLRR+I + +ED
Sbjct: 720 EHMKDIVTLMVQQLQKRLKEQDLHLSLTDKAIEKIANEGFDPEYGARPLRRSIQKNIEDL 779
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVL 269
++E++L G I++ V I ++ G+ IVL
Sbjct: 780 LSEELLRGAIEKEQQVKIGLNNKGEFIVL 808
>CLPC_ODOSI (P49574) ATP-dependent Clp protease ATP-binding subunit
clpA homolog
Length = 885
Score = 317 bits (813), Expect = 2e-86
Identities = 159/273 (58%), Positives = 209/273 (76%), Gaps = 20/273 (7%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF+GPTGVGK+EL K L+ Y FG+E++MIRLDMSE+ME+HTV+KLIGSPPGYVGY EG
Sbjct: 555 SFIFAGPTGVGKTELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNEG 614
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAV+ +PY+VVL DE+EKAHPDVFN++LQIL+DGRLTDSKGRT+DF+NT++IMT+N
Sbjct: 615 GQLTEAVQTKPYSVVLLDEVEKAHPDVFNLLLQILDDGRLTDSKGRTIDFRNTMIIMTTN 674
Query: 121 VGSSVIEKGG--------RKIGFDLDYDE-----------KDSS-YNRIKSLVTEELKQY 160
+G+ +IEK K F +D KDS+ + ++ LV EELK++
Sbjct: 675 LGAKIIEKESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSALFEKVTELVNEELKEF 734
Query: 161 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGY 220
FRPEFLNR+DE+IVF LTK ++ EI +M+K++ RL+ KE+ L V R+ + EEGY
Sbjct: 735 FRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGY 794
Query: 221 DPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEG 253
DP YGARPLRRA+MRLLED++A++ L+ + G
Sbjct: 795 DPVYGARPLRRAVMRLLEDTLAQQCLSKPLYPG 827
>CLPC_BACSU (P37571) Negative regulator of genetic competence
clpC/mecB
Length = 810
Score = 310 bits (793), Expect = 3e-84
Identities = 152/268 (56%), Positives = 208/268 (76%), Gaps = 4/268 (1%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF GPTGVGK+ELA+ LA FG EE+MIR+DMSE+ME+H+ S+L+GSPPGYVGY EG
Sbjct: 540 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEG 599
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTE VRR+PY+VVL DEIEKAHPDVFN++LQ+LEDGRLTDSKGRTVDF+NT+LIMTSN
Sbjct: 600 GQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 659
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VG+S + K + +GF++ ++ ++ +K V ELK+ FRPEF+NR+DE+IVF L K
Sbjct: 660 VGASEL-KRNKYVGFNV--QDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEK 716
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
+ EI +M ++ RLK +++ + +T+ + +V EEG D YGARPLRRAI + +ED
Sbjct: 717 KHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDR 776
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIV 268
++E++L G I +G +++D + DG+ +V
Sbjct: 777 LSEELLRGNIHKGQHIVLDVE-DGEFVV 803
>CLB1_SYNEL (Q8DJ40) Chaperone clpB 1
Length = 871
Score = 309 bits (792), Expect = 4e-84
Identities = 150/266 (56%), Positives = 202/266 (75%), Gaps = 10/266 (3%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF GPTGVGK+ELAK LA++ F +EEA++R+DMSE+ME+H VS+LIG+PPGYVGY EG
Sbjct: 605 SFIFLGPTGVGKTELAKALAAFMFDTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYDEG 664
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEA+RRRPY VVLFDEIEKAHPDVFN+ LQIL+DGR+TDS+GRTVDFKNT++IMTSN
Sbjct: 665 GQLTEAIRRRPYAVVLFDEIEKAHPDVFNVFLQILDDGRVTDSQGRTVDFKNTIIIMTSN 724
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS I LD DS Y+ + + V E ++ +FRPEFLNR+DE I+F L K
Sbjct: 725 IGSQYI----------LDVAGDDSRYSEMYNRVMEAMRAHFRPEFLNRVDEFIIFHSLRK 774
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
++++I + ++ + RL + I LS+TE+ D + E GYDP YGARPL+RAI + LE
Sbjct: 775 DQLRQIVQLQVQRLQQRLSDRHITLSLTEKAIDFLAEVGYDPVYGARPLKRAIQKQLETP 834
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKV 266
+A+ +L G+ +GD++++D D ++
Sbjct: 835 IAKAILRGDFFDGDTILVDVGEDERL 860
>CLB1_SYNP7 (P53533) Chaperone clpB 1
Length = 874
Score = 308 bits (790), Expect = 7e-84
Identities = 153/263 (58%), Positives = 202/263 (76%), Gaps = 10/263 (3%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF GPTGVGK+ELAK LA+Y F +E+AMIR+DMSE+ME+H VS+LIG+PPGYVGY EG
Sbjct: 606 SFIFLGPTGVGKTELAKALAAYLFDTEDAMIRIDMSEYMEKHAVSRLIGAPPGYVGYDEG 665
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPY+V+LFDEIEKAHPDVFN+MLQIL+DGR+TDS+GRTVDFKNT+LI+TSN
Sbjct: 666 GQLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTILILTSN 725
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS I LD DS Y ++S VTE L+ FRPEFLNR+DE I+F L K
Sbjct: 726 IGSQYI----------LDVAGDDSRYEEMRSRVTEALRANFRPEFLNRVDETIIFHSLRK 775
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
++++I I L + +RL +++ LS++ D +VE G+DP YGARPL+R I R LE +
Sbjct: 776 DQLQQIVRIQLHRLEERLSDRKLSLSMSPEAIDFLVEIGFDPVYGARPLKRVIQRELETA 835
Query: 241 MAEKMLAGEIKEGDSVIIDADSD 263
+A+ +L G+ +GD++ + +++
Sbjct: 836 IAKAILRGQFSDGDTIQVAVENE 858
>CLPB_CLOPE (Q8XKG8) Chaperone clpB
Length = 866
Score = 306 bits (784), Expect = 4e-83
Identities = 155/268 (57%), Positives = 204/268 (75%), Gaps = 11/268 (4%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF GPTGVGK+ELAKTLA F SE+ ++R+DMSE+ME+H VS+LIG PPGYVGY EG
Sbjct: 607 SFIFLGPTGVGKTELAKTLARNLFDSEDNIVRIDMSEYMEKHAVSRLIGPPPGYVGYEEG 666
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRR PY+V+LFDEIEKAH DVFN+ LQIL+DGRLTD+KG+TVDFKNT++IMTSN
Sbjct: 667 GQLTEAVRRNPYSVILFDEIEKAHDDVFNLFLQILDDGRLTDNKGKTVDFKNTIIIMTSN 726
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS G+ L+ + + I+ V E+K F+PEFLNR+D++I+FR L+
Sbjct: 727 IGS----------GYLLENKSGEGIEDDIRENVMNEMKLRFKPEFLNRVDDIIMFRPLSS 776
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
+K+I DI L++V +RL+ + I L VT+R ++ + EEGYDP YGARPL+R I +LE
Sbjct: 777 EGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETE 836
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIV 268
+A+K++AGEI +G +ID DGK+IV
Sbjct: 837 IAKKIIAGEIYDGSVALIDG-VDGKIIV 863
>CLPB_GEOSL (Q74FF1) Chaperone clpB
Length = 865
Score = 303 bits (775), Expect = 4e-82
Identities = 143/269 (53%), Positives = 206/269 (76%), Gaps = 12/269 (4%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SF+F GPTGVGK+E AK LA + F ++A++R+DMSE+ E+HTV++LIG+PPGYVGY EG
Sbjct: 606 SFLFLGPTGVGKTETAKALAEFLFNDDQAIVRIDMSEYQEKHTVARLIGAPPGYVGYEEG 665
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPY++VLFDEIEKAHP+VFN++LQ+L+DGRLTD +GRTVDF+NT++IMTSN
Sbjct: 666 GQLTEAVRRRPYSIVLFDEIEKAHPEVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 725
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS I++ G S Y R+K++VTE LK+ F+PEFLNR+DE++++ L
Sbjct: 726 LGSQWIQQYG------------SSDYARMKAMVTETLKEGFKPEFLNRIDEIVIYHALPL 773
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
++K+I DI ++ + RL + I L ++++ R+ + EGYDP+YGARPL+R I R ++D
Sbjct: 774 EQIKKIVDIQVECLKQRLADRRIVLELSDKAREYLSREGYDPAYGARPLKRTIQRKIQDP 833
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVL 269
+A +L G+ +EGD+V +D G+ +V+
Sbjct: 834 LALALLEGKFQEGDTVRVDLSVSGEELVI 862
>CLPB_BACAN (Q81TT4) Chaperone clpB
Length = 866
Score = 300 bits (768), Expect = 3e-81
Identities = 148/267 (55%), Positives = 202/267 (75%), Gaps = 9/267 (3%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF GPTGVGK+ELAKTLA F SEE MIR+DMSE+ME+H VS+LIG+PPGYVGY EG
Sbjct: 606 SFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEG 665
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRR+PY+V+L DEIEKAHP+VFN++LQ+L+DGR+TDS+GRTVDFKNT++IMTSN
Sbjct: 666 GQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSN 725
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS+ + G +E S + LV +L+ +FRPEFLNR+DE+I+F+ LT
Sbjct: 726 IGSAHLLDG---------LEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTT 776
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
E+K I D ++KE+ RL + I + +TE ++ VVE G+DP YGARPL+R + R +E
Sbjct: 777 NEIKGIVDKIVKELQGRLADRHITVKLTEAAKEFVVEAGFDPMYGARPLKRYVQRQVETK 836
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVI 267
+A +++AG I + V++D +++ V+
Sbjct: 837 LARELIAGTITDNSHVVVDVENNELVV 863
>CLPB_DEIRA (Q9RVI3) Chaperone clpB
Length = 852
Score = 299 bits (766), Expect = 5e-81
Identities = 147/264 (55%), Positives = 198/264 (74%), Gaps = 10/264 (3%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SF+F GP+GVGK+ELAK LA + F S +AM+R+DMSE+ME+HTV++LIG+PPGYVG+ EG
Sbjct: 590 SFMFLGPSGVGKTELAKALAEFLFDSSDAMVRIDMSEYMEKHTVARLIGAPPGYVGFEEG 649
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPY V+LFDEIEKAHPDVFN++LQ+L+DGRLTD +GRTVDF+NTL+IMTSN
Sbjct: 650 GQLTEAVRRRPYAVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSN 709
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS +I L+ ++ IKS V +EL+ FRPEFLNR+D++IVF LT
Sbjct: 710 IGSPLI----------LEMQQRGEDAETIKSAVMDELRGEFRPEFLNRVDDIIVFDALTA 759
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
+++ I DI L + RL + I L +TE +D++ E GYDP+YGARPLRR I + +E
Sbjct: 760 KDLQSIVDIQLGGLRRRLAERRITLHLTEDAKDKLAELGYDPAYGARPLRRTISQYIETP 819
Query: 241 MAEKMLAGEIKEGDSVIIDADSDG 264
+A ++L G+I++G + +D G
Sbjct: 820 LAREILGGQIQDGSVLNVDYGDGG 843
>CLPB_BACCR (Q81GM5) Chaperone clpB
Length = 866
Score = 299 bits (766), Expect = 5e-81
Identities = 148/267 (55%), Positives = 202/267 (75%), Gaps = 9/267 (3%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF GPTGVGK+ELAKTLA F SEE MIR+DMSE+ME+H VS+LIG+PPGYVGY EG
Sbjct: 606 SFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEG 665
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRR+PY+VVL DEIEKAHP+VFN++LQ+L+DGR+TDS+GRTVDFKNT++IMTSN
Sbjct: 666 GQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSN 725
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS+ + G +E S + LV +L+ +FRPEFLNR+DE+I+F+ LT
Sbjct: 726 IGSAHLLDG---------LEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTT 776
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
E+K I D ++KE+ RL + I + +T+ ++ VVE G+DP YGARPL+R + R +E
Sbjct: 777 NEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETK 836
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVI 267
+A +++AG I + V++D +++ V+
Sbjct: 837 LARELIAGTITDNSHVVVDVENNELVV 863
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.137 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,899,694
Number of Sequences: 164201
Number of extensions: 1366638
Number of successful extensions: 6982
Number of sequences better than 10.0: 366
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 6557
Number of HSP's gapped (non-prelim): 457
length of query: 284
length of database: 59,974,054
effective HSP length: 109
effective length of query: 175
effective length of database: 42,076,145
effective search space: 7363325375
effective search space used: 7363325375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0266.20