BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0265.4
(822 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RA50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase 40 0.025
EZRA_BACSU (O34894) Septation ring formation regulator ezrA 40 0.033
KINH_SYNRA (O43093) Kinesin heavy chain (Synkin) 39 0.043
RRPO_BYDVR (P29045) Putative RNA-directed RNA polymerase (EC 2.7... 38 0.095
NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neur... 38 0.095
YCF1_OENHO (Q9MTH5) Hypothetical 287.9 kDa protein ycf1 37 0.16
SPOF_SCHPO (Q10411) Sporulation-specific protein 15 37 0.16
RRPO_BYDVP (P09505) Putative RNA-directed RNA polymerase (EC 2.7... 37 0.16
M12_STRPY (P19401) M protein, serotype 12 precursor (Fragment) 37 0.16
CLPB_CANBF (Q7VQF3) Chaperone clpB 37 0.16
MYH6_MOUSE (Q02566) Myosin heavy chain, cardiac muscle alpha iso... 37 0.21
LMB1_MOUSE (P02469) Laminin beta-1 chain precursor (Laminin B1 c... 37 0.21
SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chro... 37 0.28
RRPO_BYDV1 (P29044) Putative RNA-directed RNA polymerase (EC 2.7... 37 0.28
KTN1_HUMAN (Q86UP2) Kinectin (Kinesin receptor) (CG-1 antigen) 37 0.28
UVRB_CLOAB (Q97LQ2) UvrABC system protein B (UvrB protein) (Exci... 36 0.47
MYH6_RAT (P02563) Myosin heavy chain, cardiac muscle alpha isofo... 36 0.47
SMC3_SCHPO (O42649) Structural maintenance of chromosome 3 (Cohe... 35 0.62
KTN1_VULVU (O97961) Kinectin 35 0.62
SR54_MYCMY (Q01442) Signal recognition particle protein (Fifty-f... 35 0.81
>RA50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase
Length = 880
Score = 40.0 bits (92), Expect = 0.025
Identities = 54/275 (19%), Positives = 117/275 (41%), Gaps = 43/275 (15%)
Query: 373 DKLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECVTRGGPNFSNSCTMTN--QGFQGQ 430
+KL K + EK+ +I+ I+ K A ++++E + + P +GF+ +
Sbjct: 252 EKLKGRKKGLEEKIVQIERSIEEKK---AKISELEEIVKDIPKLQEKEKEYRKLKGFRDE 308
Query: 431 SSGLFQQVQEQVDVKDGGKKSLEELLESFINRMESNYKIQDAA----------------- 473
+++++++ + K++EE+++ + E +I++
Sbjct: 309 YESKLRRLEKELSKWESELKAIEEVIKEGEKKKERAEEIREKLSEIEKRLEELKPYVEEL 368
Query: 474 --IKNLKSQFGQLAKQMAKIPQGKFSPNALILSK-----HENADDVTTRSGRVLHESKKQ 526
K ++ Q +L ++ + G+ L K E ++TTR G Q
Sbjct: 369 EDAKQVQKQIERLKARLKGLSPGEVIEKLESLEKERTEIEEAIKEITTRIG--------Q 420
Query: 527 VEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIPFPKALANKNLDKQFSKFLE 586
+E EKN++++ +E + K + PV R L+ ++ L K ++++ + E
Sbjct: 421 MEQEKNERMKAIEE-LRKAKGKCPVCGRELT--EEHKKELMERYTLEIKKIEEELKRTTE 477
Query: 587 VFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKL 621
+KL +N+ LE L MRDI + ++L
Sbjct: 478 EERKLRVNL---RKLEIKLREFSVMRDIAEQIKEL 509
>EZRA_BACSU (O34894) Septation ring formation regulator ezrA
Length = 562
Score = 39.7 bits (91), Expect = 0.033
Identities = 89/408 (21%), Positives = 168/408 (40%), Gaps = 65/408 (15%)
Query: 268 LRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWRFGLD 327
+ K+ ++I + V S EE E E+ ++ K ++ L + L YD LE LD
Sbjct: 119 IEKILREISDLVTS-EEKSREEIEQVRERYSKSRKNLLAYSHLYGELYDSLEKD----LD 173
Query: 328 TASSG--EFDALPPQAGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQ-ISE 384
SG +F+ Y + AR + E DR R + KLLA KQ +
Sbjct: 174 EIWSGIKQFEEETEGGNY-----ITARKVLLEQDRNLERLQSYIDDVPKLLADCKQTVPG 228
Query: 385 KVAEIQNHIKVTKLVGASVAKVECVTRGGPNFSNS------CTMTNQGFQGQSS------ 432
++A++++ K G + ++ + + N SN MT S+
Sbjct: 229 QIAKLKDGYGEMKEKGYKLEHIQ-LDKELENLSNQLKRAEHVLMTELDIDEASAILQLID 287
Query: 433 ----GLFQQVQEQVDVKDGGKKSLEELLESF--INRMESNYKIQDAAIK-NLKSQFGQLA 485
++QQ++ +V+ + EL+ ++ + + + K + +K + + G+L
Sbjct: 288 ENIQSVYQQLEGEVEAGQSVLSKMPELIIAYDKLKEEKEHTKAETELVKESYRLTAGELG 347
Query: 486 KQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHES----KKQVEGEKNDKVEEKDE- 540
KQ A + + +LS ++ D + +L E +KQ+E K + E ++
Sbjct: 348 KQQAF--EKRLDEIGKLLSSVKDKLDAEHVAYSLLVEEVASIEKQIEEVKKEHAEYRENL 405
Query: 541 --------------GVIKKRVSEPVKARVLSTPSPELSKIPFPKALANKNLDKQFSKFLE 586
+KK +SE AR+L T S IP + + L+ E
Sbjct: 406 QALRKEELQARETLSNLKKTISE--TARLLKT-----SNIPGIPSHIQEMLENAHHHIQE 458
Query: 587 VFKKLHINIPFSEALEQMLIYAKFMRDILSK-KRKLSEVDETVMLTEE 633
+L+ +P + +E+ + K DI+++ R+ E+ E V+L E+
Sbjct: 459 TVNQLN-ELPLN--MEEAGAHLKQAEDIVNRASRESEELVEQVILIEK 503
>KINH_SYNRA (O43093) Kinesin heavy chain (Synkin)
Length = 935
Score = 39.3 bits (90), Expect = 0.043
Identities = 72/317 (22%), Positives = 120/317 (37%), Gaps = 65/317 (20%)
Query: 259 TTRFFPRALLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGL 318
T RF RA K K + + AE K LL+K +T +A +G
Sbjct: 319 TLRFGARAKSIKNKAKVNADLSPAE---------LKALLKKVKSEAVTYQTYIAAL-EGE 368
Query: 319 EYSWRFG----------LDTASSGEFDALPPQAGY-----DLIEKMAARAMNSENDRQTR 363
WR G +D S G+F LPP G+ D + A E D +
Sbjct: 369 VNVWRTGGTVPEGKWVTMDKVSKGDFAGLPPAPGFKSPVSDEGSRPATPVPTLEKDEREE 428
Query: 364 RRMFEFEAYDKLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECVTRGGPNFSNSCTMT 423
E E D QISEK E+ N K+ + + + + S T
Sbjct: 429 FIKRENELMD-------QISEKETELTNREKLLESLREEMGYYK-------EQEQSVTKE 474
Query: 424 NQGFQGQSSGLFQQVQE----------QVD-VKDGGKKSLEELLESFINRMESNYKIQDA 472
NQ + S L Q+Q+ VD +K+ + + EL E N E +DA
Sbjct: 475 NQQMTSELSELRLQLQKVSYESKENAITVDSLKEANQDLMAELEELKKNLSEMRQAHKDA 534
Query: 473 AIKNLKSQFGQLAKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHESKKQVEGEKN 532
+ + + A++MA++ G F P+ ++ K R + + +++GE+
Sbjct: 535 TDSDKEK---RKAEKMAQMMSG-FDPSGILNDKE-----------RQIRNALSKLDGEQQ 579
Query: 533 DKVEEKDEGVIKKRVSE 549
+ +D +++ ++E
Sbjct: 580 QTLTVEDLVSLRRELAE 596
>RRPO_BYDVR (P29045) Putative RNA-directed RNA polymerase (EC
2.7.7.48) [Contains: 39 kDa protein]
Length = 867
Score = 38.1 bits (87), Expect = 0.095
Identities = 79/386 (20%), Positives = 157/386 (40%), Gaps = 59/386 (15%)
Query: 366 MFEFEAYDKLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECV---------TRGGPNF 416
M + E ++ LA ++ +E+ E++ + KL+ A +K +RGG
Sbjct: 57 MADIEDFEAELA--EEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDFFTKSRGGVYA 114
Query: 417 SNSCTMTNQGFQGQSSGLFQQVQEQVDVK-DGGKKSLEELLESFINRMESNYKIQDAAIK 475
SC T Q + +S L + ++EQ + KK ++E FIN ++ + + +K
Sbjct: 115 PLSCEPTRQELEAKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFIN-CWNDLRSRLRLVK 173
Query: 476 NLKSQFGQLAKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHESKKQVEGEKNDKV 535
++K + A+ AKI F+P + + + +V ++ E K+ GE+ +
Sbjct: 174 DVKDEAKDNARAAAKIGAEMFAP--VDVQDLYSFTEVKKVETGLMKEVVKERNGEEEKHL 231
Query: 536 EEKDEGVIKKR------------VSEPVKARVLSTPSPELSKIPFPKALANK----NLDK 579
E E V + ++E VK + + + ELS + + N LD
Sbjct: 232 EPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVENVGDKFKLDI 291
Query: 580 QFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQ 639
+L+ + + IP ++ ++ ++ + +++ L +D L C+A
Sbjct: 292 ASKTYLKQVASMSVPIPTNKDIKLKMVLQS--PEARARREPLDVLDSVGFLEGLCTA--- 346
Query: 640 RKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQM 699
F P I GL ++ A+ D GA + + N+ ++ T L L
Sbjct: 347 ----------SGFESPFPILGLPEI-AVTD-GARLRKV------SSNIRYLSQTHLGL-- 386
Query: 700 ADRSLKTPYGIIEDVMVKVDKYVFPI 725
K P + + +V V++ VF +
Sbjct: 387 ---VYKAPNASLHNALVAVERRVFTV 409
>NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M)
Length = 848
Score = 38.1 bits (87), Expect = 0.095
Identities = 34/144 (23%), Positives = 61/144 (41%), Gaps = 20/144 (13%)
Query: 522 ESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIPFPK----------- 570
E + + EGE ++ E K+E I+ +V E + PE +K P PK
Sbjct: 562 EGETEAEGE-GEEAEAKEEKKIEGKVEEVAVKEEIKVEKPEKAKSPMPKSPVEEVKPKPE 620
Query: 571 ALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKR-----KLSEVD 625
A A K K+ K E K++ P E +E+ + +D+ KK+ K V+
Sbjct: 621 AKAGKGEQKEEEKVEEEKKEVTKESPKEEKVEKK---EEKPKDVADKKKAESPVKEKAVE 677
Query: 626 ETVMLTEECSAILQRKIPRKRRDP 649
E + +++ L++ ++ P
Sbjct: 678 EVITISKSVKVSLEKDTKEEKPQP 701
>YCF1_OENHO (Q9MTH5) Hypothetical 287.9 kDa protein ycf1
Length = 2434
Score = 37.4 bits (85), Expect = 0.16
Identities = 35/143 (24%), Positives = 65/143 (44%), Gaps = 11/143 (7%)
Query: 442 VDVKDGGKKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNAL 501
++ K+ K S +EL ++ +I DA + +LK + Q ++ +I Q
Sbjct: 1998 LEKKNSPKDSNQEL------HAQAKARIWDALVASLKQKREQKERKNKRIAQLIEKKRQK 2051
Query: 502 ILSKHENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIK-KRVSEPVKARVLSTPS 560
+ KH+ + R + +KK++E EK K+E ++E + K KR E K ++ +
Sbjct: 2052 EIEKHKRKIEKQMRKKEKIENAKKKIENEKK-KIETEEEKLEKEKRKKERKKEKLKKKVA 2110
Query: 561 PELSKIPFPKALANKNLDKQFSK 583
+ K+ K KN+ K K
Sbjct: 2111 KNIEKL---KNKVAKNVAKNIEK 2130
>SPOF_SCHPO (Q10411) Sporulation-specific protein 15
Length = 1957
Score = 37.4 bits (85), Expect = 0.16
Identities = 62/271 (22%), Positives = 110/271 (39%), Gaps = 43/271 (15%)
Query: 375 LLASNKQI-------SEKVAEIQNHIKVTKLVGASV-AKVECVTRGGPNFSNSCTMTNQG 426
LLASN+++ E +A +Q I+ + + +K+ V+ N + TN+
Sbjct: 1009 LLASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKS 1068
Query: 427 FQGQSSGLF---QQVQEQVDVKDGGKKSLEELLESFINRMESNYKIQD---AAIKNLKSQ 480
+ +++ L + VQ+ +D KD LEEL + E N +I+D A K K Q
Sbjct: 1069 LEDKTNQLKYIEKNVQKLLDEKDQRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQ 1128
Query: 481 -------FGQLAKQMAKIPQGKFSPNALILSKH----------ENADDVTTRSG---RVL 520
L ++ + Q N LI+S E D+ R + L
Sbjct: 1129 HDLCANFVDDLKEKSDALEQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMKKSL 1188
Query: 521 HESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIPFPKALANKNLDKQ 580
+S + ++D V DE K+ + LST E+ + + K ++
Sbjct: 1189 SDSDNVISVIRSDLVRVNDELDTLKKDKDS-----LSTQYSEVCQDRDDLLDSLKGCEES 1243
Query: 581 FSKFL----EVFKKLHINIPFSEALEQMLIY 607
F+K+ E+ K I++P SE L+ ++
Sbjct: 1244 FNKYAVSLRELCTKSEIDVPVSEILDDNFVF 1274
>RRPO_BYDVP (P09505) Putative RNA-directed RNA polymerase (EC
2.7.7.48) [Contains: 39 kDa protein]
Length = 867
Score = 37.4 bits (85), Expect = 0.16
Identities = 78/386 (20%), Positives = 158/386 (40%), Gaps = 59/386 (15%)
Query: 366 MFEFEAYDKLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECV---------TRGGPNF 416
M + E ++ LA ++ +E+ E++ + KL+ A +K +RGG
Sbjct: 57 MADIEDFEAELA--EEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWTDFFTKSRGGVYA 114
Query: 417 SNSCTMTNQGFQGQSSGLFQQVQEQVDVK-DGGKKSLEELLESFINRMESNYKIQDAAIK 475
SC T Q + +S L + ++EQ + KK ++E FIN ++ + + +K
Sbjct: 115 PLSCEPTRQELEVKSEKLERLLEEQHQFEVRAAKKYIKEKGRGFIN-CWNDLRSRLRLVK 173
Query: 476 NLKSQFGQLAKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHESKKQVEGEKNDKV 535
++K + A+ AKI F+P + + + +V ++ E K+ GE+ +
Sbjct: 174 DVKDEAKDNARAAAKIGAEMFAP--VDVQDLYSFTEVKKVETGLMKEVVKEKNGEEEKHL 231
Query: 536 EEKDEGVIKKR------------VSEPVKARVLSTPSPELSKIPFPKALANK----NLDK 579
E E V + ++E VK + + + ELS + + N LD
Sbjct: 232 EPIMEEVRSIKDTAEARDAASTWITETVKLKNATLNADELSLATIARYVENVGDKFKLDI 291
Query: 580 QFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQ 639
+L+ + + IP ++ ++ ++ + +++ ++ +D L C+A
Sbjct: 292 ASKTYLKQVASMSVPIPTNKDIKLKMVLQS--PEARARRERMDVLDSVGFLEGLCTA--- 346
Query: 640 RKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQM 699
F P I GL ++ A+ D GA + + N+ ++ T L L
Sbjct: 347 ----------SGFESPFPILGLPEI-AVTD-GARLRKV------SSNIRYLSQTHLGL-- 386
Query: 700 ADRSLKTPYGIIEDVMVKVDKYVFPI 725
K P + + +V V++ VF +
Sbjct: 387 ---VYKAPNASLHNALVAVERRVFTV 409
>M12_STRPY (P19401) M protein, serotype 12 precursor (Fragment)
Length = 564
Score = 37.4 bits (85), Expect = 0.16
Identities = 60/291 (20%), Positives = 121/291 (40%), Gaps = 44/291 (15%)
Query: 360 RQTRRRMFEFEAYDKLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECVTRGGPNFSNS 419
++ ++ FE A LA +K+ + K+AE+++ + K E G + N
Sbjct: 220 KENAKKDFELAALGHQLA-DKEYNAKIAELESKLADAK------KDFELAALGHQHAHNE 272
Query: 420 CTMTNQGFQGQSSGLFQQVQEQVDVKDGGKKSLEELLESFINRMESNYKIQDAAIKNLKS 479
Q + G +Q++EQ + D +K LE+ + K +A + NLK+
Sbjct: 273 Y----QAKLAEKDGQIKQLEEQKQILDASRKGTARDLEA----VRQAKKATEAELNNLKA 324
Query: 480 QFGQLAKQ--------------MAKIPQGKFSPNALILSKHENADDVTTRSGRVLH---- 521
+ ++ +Q + + + K L + E + ++ S + L
Sbjct: 325 ELAKVTEQKQILDASRKGTARDLEAVRKSKKQQVEAALKQLEEQNKISEASRKGLRRDLD 384
Query: 522 ---ESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIPFPKALANKNLD 578
E+KKQVE + + E D+ +K++S+ + + +L K K L+
Sbjct: 385 TSREAKKQVEKDLANLTAELDKVKEEKQISDASRQGL----RRDLDASREAKKQVEKALE 440
Query: 579 KQFSKFLEVFKKLHINIPFSEAL---EQMLIYAKFMRDILSKKRKLSEVDE 626
+ SK L +KL+ ++ S+ L E+ + AK + + K +L++ E
Sbjct: 441 EANSK-LAALEKLNKDLEESKKLTEKEKAELQAKLEAEAKALKEQLAKQAE 490
>CLPB_CANBF (Q7VQF3) Chaperone clpB
Length = 872
Score = 37.4 bits (85), Expect = 0.16
Identities = 42/169 (24%), Positives = 70/169 (40%), Gaps = 24/169 (14%)
Query: 449 KKS--LEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNALILSKH 506
KKS ++ELLE + +SNY I D + KN Q+ +Q F+ + L++
Sbjct: 130 KKSGIVKELLEKLVQYEQSNYSIHDDSFKNRT----QILEQ--------FTVDITSLAEQ 177
Query: 507 ENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPE---- 562
N D V R + + KN+ V + GV K + E + R+++ PE
Sbjct: 178 NNLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGNPGVGKTAIVEGLAQRIINKEVPEGLKN 237
Query: 563 --LSKIPFPKALANK----NLDKQFSKFLEVFKKLHINIPFSEALEQML 605
+ + LA +++F K L K + I F + L M+
Sbjct: 238 SRILSLDIAALLAGTKYRGEFEERFKKVLYAVSKDNNTILFIDELHVMV 286
>MYH6_MOUSE (Q02566) Myosin heavy chain, cardiac muscle alpha isoform
(MyHC-alpha)
Length = 1938
Score = 37.0 bits (84), Expect = 0.21
Identities = 80/357 (22%), Positives = 143/357 (39%), Gaps = 64/357 (17%)
Query: 449 KKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNALILSKHEN 508
KK +++L E + ++E + +KNL + L + +AK+ + K AL + +
Sbjct: 953 KKDIDDL-ELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEK---KALQEAHQQA 1008
Query: 509 ADDVTTRSGRV--LHESKKQVEGEKND--------KVEEKDEGVIKKRVSEPVKARVLST 558
DD+ +V L +SK ++E + +D K D K+++ +K S
Sbjct: 1009 LDDLQAEEDKVNTLTKSKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESI 1068
Query: 559 PSPELSKIPFPKALANKNLD--KQFSKF-------LEVFKKLHINIPFSEALEQMLIYAK 609
E K+ + L K D +Q SK L++ KKL N E LE+ L +
Sbjct: 1069 MDLENDKLQLEEKLKKKEFDISQQNSKIEDEQALALQLQKKLKENQARIEELEEELEAER 1128
Query: 610 FMRDILSK-----KRKLSEVDE-------TVMLTEECSAILQRKIPRKRRDPGSFTIPVE 657
R + K R+L E+ E + E + + + + RRD T+ E
Sbjct: 1129 TARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRRDLEEATLQHE 1188
Query: 658 IEGLS----KVDALCDLGASI-NLMPL--------SMFRRLNLGEVTPTMLSLQMADRSL 704
+ D++ +LG I NL + S F +L L +VT M + A +L
Sbjct: 1189 ATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEF-KLELDDVTSNMEQIIKAKANL 1247
Query: 705 KTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDKGQL 761
+ +ED + ++Y ++ + + T RAK+ + G+L
Sbjct: 1248 EKVSRTLED---QANEYRVKLEEAQRSLND------------FTTQRAKLQTENGEL 1289
Score = 32.7 bits (73), Expect = 4.0
Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 372 YDKLLASNKQ-ISEKVAEIQNHIKVTKLVGASVAKVECVTRGGPNFSNSCTMTNQGFQGQ 430
+DK+LA KQ E +E+++ K + + + K++ + N+ Q +
Sbjct: 1451 FDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEE 1510
Query: 431 SSGLFQQVQEQVDVKDGGKKSLEEL-------------LESFINRMESNYKIQDAAIKNL 477
S L +Q+ E G K++ EL L+S + E++ + ++ I
Sbjct: 1511 ISDLTEQLGE-------GGKNVHELEKIRKQLEVEKLELQSALEEAEASLEHEEGKILRA 1563
Query: 478 KSQFGQ--------LAKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHESKKQVEG 529
+ +F Q LA++ ++ Q K + ++ S + D TRS KK++EG
Sbjct: 1564 QLEFNQIKAEIERKLAEKDEEMEQAKRNHLRMVDSLQTSLD-AETRSRNEALRVKKKMEG 1622
Query: 530 EKND 533
+ N+
Sbjct: 1623 DLNE 1626
>LMB1_MOUSE (P02469) Laminin beta-1 chain precursor (Laminin B1 chain)
Length = 1786
Score = 37.0 bits (84), Expect = 0.21
Identities = 53/256 (20%), Positives = 101/256 (38%), Gaps = 26/256 (10%)
Query: 341 AGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQISEKVAEIQNHIKVTKLVG 400
A D IE +A + S N ++ L + I E+V + + +
Sbjct: 1516 ADLDSIEAVANEVLKSGNASTPQQ----------LQNLTEDIRERVETLSQVEVILQQSA 1565
Query: 401 ASVAKVECVTRGGPNFSNSCTMTNQGFQGQSSGLFQQVQEQVDVKDGGKKSLEEL--LES 458
A +A+ E + S S T L + + QV + K++ E++ ++
Sbjct: 1566 ADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIKQADEDIQGTQN 1625
Query: 459 FINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNA--------LILSKHENAD 510
+ +ES + + N + +L + + ++ + K + N+ ++ S +NAD
Sbjct: 1626 LLTSIESETAASEETLTNASQRISKLERNVEELKR-KAAQNSGEAEYIEKVVYSVKQNAD 1684
Query: 511 DVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIPFPK 570
DV L E K+VE K EE + +R +E ++ + + SK+ +
Sbjct: 1685 DVKKTLDGELDEKYKKVESLIAQKTEESADA---RRKAELLQNEAKTLLAQANSKLQLLE 1741
Query: 571 ALANKNLDKQFSKFLE 586
L K D Q K+LE
Sbjct: 1742 DLERKYEDNQ--KYLE 1755
>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4
(Chromosome segregation protein cut3)
Length = 1324
Score = 36.6 bits (83), Expect = 0.28
Identities = 65/361 (18%), Positives = 142/361 (39%), Gaps = 45/361 (12%)
Query: 265 RALLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWRF 324
+A L K +++F++ +EN E + + +L R + LV + LE +
Sbjct: 333 KAKLEDSKNSVLSFLK--DEN--ELFMKQNQLYRTILYETRNKKTLVQNLLNSLEGKLQA 388
Query: 325 GLDTASSGEFDALPPQAGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQISE 384
L+ E D + + AA+ N + R+ +E + +I E
Sbjct: 389 HLEKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTV--------KIEE 440
Query: 385 KVAEIQNHIKVTKLVGASVAKVECVTRGGPNFSNSCTMTNQGFQGQSSGLFQQVQEQVDV 444
++ + N K K S+ + N +S + +Q + + L ++Q++
Sbjct: 441 QLKFLLNKEKKLK---KSIEALSFEKSEAENSLSSHDIDSQKLNSEIADLSLRLQQEELS 497
Query: 445 KDGGKKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNALILS 504
D +KSL+ E N +E K A++ + + KQ+ ++ + L+
Sbjct: 498 LDDIRKSLQGKTEGISNAIEEKQKAMAPALEKINQLTSE--KQILQVEL-----DMLLNK 550
Query: 505 KHENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELS 564
+++ +DV + S+ ++ +ND E ++ +LS+ LS
Sbjct: 551 ENDLINDVES--------SQSSLDKLRNDAEENRN---------------ILSSKLKVLS 587
Query: 565 KIPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEV 624
+ K +KN++++ ++ L N E ++ L ++ ++L ++L E
Sbjct: 588 DLKGEKKDVSKNIERKKETVHNTYRNLMSNRTKLEEMKASLSSSRSRGNVLESLQRLHES 647
Query: 625 D 625
D
Sbjct: 648 D 648
>RRPO_BYDV1 (P29044) Putative RNA-directed RNA polymerase (EC
2.7.7.48) [Contains: 39 kDa protein]
Length = 867
Score = 36.6 bits (83), Expect = 0.28
Identities = 76/386 (19%), Positives = 158/386 (40%), Gaps = 59/386 (15%)
Query: 366 MFEFEAYDKLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECV---------TRGGPNF 416
M + E ++ LA ++ +E+ E++ + KL+ A +K +RGG
Sbjct: 57 MADIEDFEAELA--EEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDFFTKSRGGVYA 114
Query: 417 SNSCTMTNQGFQGQSSGLFQQVQEQVDVK-DGGKKSLEELLESFINRMESNYKIQDAAIK 475
SC T Q + +S L + ++EQ + KK ++E FIN ++ + + +K
Sbjct: 115 PLSCEPTRQDLEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFIN-CWNDLRSRLRLVK 173
Query: 476 NLKSQFGQLAKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHESKKQVEGEKNDKV 535
++K + A+ AKI F+P + + + +V ++ E K+ GE+ +
Sbjct: 174 DVKDEAKDNARAAAKIGAEMFAP--VDVQDLYSFTEVKKVETGLMKEVVKERNGEEEKHL 231
Query: 536 EEKDEGVIKKR------------VSEPVKARVLSTPSPELSKIPFPKALANK----NLDK 579
E E V + ++E +K + + + ELS + + N LD
Sbjct: 232 EPIMEEVRSIKDTAEARDAASTWITETIKLKNSTLNADELSLATIARYVENVGDKFKLDI 291
Query: 580 QFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQ 639
+L+ + + IP ++ ++ ++ + +++ ++ +D L C+A
Sbjct: 292 ASKTYLKQVASMSVPIPTNKDIKLKMVLQS--PEARARRERMDVLDSVGFLEGLCTA--- 346
Query: 640 RKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQM 699
F P I GL ++ A+ D GA + + N+ ++ T L L
Sbjct: 347 ----------SGFESPFPILGLPEI-AVTD-GARLRKV------SCNIRYLSQTHLGL-- 386
Query: 700 ADRSLKTPYGIIEDVMVKVDKYVFPI 725
K P + + +V V++ V+ +
Sbjct: 387 ---VYKAPNASLHNALVAVERRVYTV 409
>KTN1_HUMAN (Q86UP2) Kinectin (Kinesin receptor) (CG-1 antigen)
Length = 1357
Score = 36.6 bits (83), Expect = 0.28
Identities = 101/523 (19%), Positives = 192/523 (36%), Gaps = 102/523 (19%)
Query: 121 EEMQAHIEARIQEGITLRLCEQEVENANRSLRELTSAPMSYDYPGSIVFPEGVGNFKLRP 180
E+M+A I QE LR V N L SA ++ KLR
Sbjct: 413 EQMEAEIAHLKQENGILR---DAVSNTTNQLESKQSAELN----------------KLRQ 453
Query: 181 AFINLVSQSQYGGGSSEDPHAHMERFIRNCNTYRVSNVSSEAIRLSLFPFSLKDAAEEWL 240
+ LV++ G + + N A +L + L++A W
Sbjct: 454 DYARLVNELTEKTGKLQQEEVQKK------------NAEQAATQLKV---QLQEAERRWE 498
Query: 241 NSQPQGSITTWE------DLAEKFTTRFFPRALLRKLKKDIMNFVQSAEENLYEAWERFK 294
Q T E DL KF + L D + Q E+ L + E +
Sbjct: 499 EVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQ 558
Query: 295 KLLRKCPQHNLTQAELVATFYDGLEYSWRFGLDTASSGEFDALPPQAGYDLIEKMAARAM 354
K + K + L D LE + A + Q + A +
Sbjct: 559 KRVNK-------EESLQMQVQDILEQN------EALKAQIQQFHSQIAAQTSASVLAEEL 605
Query: 355 N---SENDRQTRRRMFEFEAYDKLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECVTR 411
+ +E D+Q + + D L + +++ K E+++ + L+ A V K++ +
Sbjct: 606 HKVIAEKDKQIK------QTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALAN 659
Query: 412 GGPNFSNSCTMTNQGFQGQSSGLFQQVQEQVDVKDGGKKSLEELLESFINRMESNYKIQD 471
Q ++ +++Q+ V VKD + LEE L+ I+ +KI +
Sbjct: 660 E---------------QAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILN 704
Query: 472 AAIKNLKSQFGQLAKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHESKKQVEGEK 531
K LKS+ +L +++ P DV + + + E + EK
Sbjct: 705 DQNKALKSEVQKLQTLVSEQPN----------------KDVVEQMEKCIQE-----KDEK 743
Query: 532 NDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIPFPKALANKNLDKQFSKFLEVFKK- 590
VEE E + + ++ + + T + L+K A +N F+ +E KK
Sbjct: 744 LKTVEELLETGLIQVATKEEELNAIRTENSSLTK-EVQDLKAKQNDQVSFASLVEELKKV 802
Query: 591 LHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEE 633
+H +++E+ L+ A+ ++ + +K++ + ++ + + +E
Sbjct: 803 IHEKDGKIKSVEE-LLEAELLK-VANKEKTVQDLKQEIKALKE 843
>UVRB_CLOAB (Q97LQ2) UvrABC system protein B (UvrB protein)
(Excinuclease ABC subunit B)
Length = 666
Score = 35.8 bits (81), Expect = 0.47
Identities = 30/121 (24%), Positives = 55/121 (44%), Gaps = 10/121 (8%)
Query: 510 DDVTTRSGRVLHESKKQ--VEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIP 567
D +T G+ + E+K++ ++ E N+K K IKK V + + ++ E +
Sbjct: 553 DKITDAMGKAISETKRRRKIQIEYNEKNGIKPT-TIKKAVRDVIGISEVAEGKTEYKSMD 611
Query: 568 FPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDET 627
NKN+DK +F + K+ + F +A A F + K+KL+E +E
Sbjct: 612 EAVKADNKNIDKLIKEFEKEMKEAAKELQFEKA-------AYFRDKVNELKKKLNENEEV 664
Query: 628 V 628
+
Sbjct: 665 I 665
>MYH6_RAT (P02563) Myosin heavy chain, cardiac muscle alpha isoform
(MyHC-alpha)
Length = 1938
Score = 35.8 bits (81), Expect = 0.47
Identities = 77/357 (21%), Positives = 141/357 (38%), Gaps = 64/357 (17%)
Query: 449 KKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNALILSKHEN 508
KK +++L E + ++E + +KNL + L + +AK+ + K AL + +
Sbjct: 952 KKDIDDL-ELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEK---KALQEAHQQA 1007
Query: 509 ADDVTTRSGRV--LHESKKQVEGEKND--------KVEEKDEGVIKKRVSEPVKARVLST 558
DD+ +V L +SK ++E + +D K D K+++ +K S
Sbjct: 1008 LDDLQAEEDKVNTLTKSKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESI 1067
Query: 559 PSPELSKIPFPKALANKNLD--KQFSKF-------LEVFKKLHINIPFSEALEQML---- 605
E K+ + L K D +Q SK L++ KKL N E LE+ L
Sbjct: 1068 MDLENDKLQLEEKLKKKEFDISQQNSKIEDEQALALQLQKKLKENQARIEELEEELEAER 1127
Query: 606 --------IYAKFMRDILSKKRKLSEVDETVMLTEECSAILQRKIPRKRRDPGSFTIPVE 657
+ + R++ +L E + E + + + + RRD T+ E
Sbjct: 1128 TARAKVEKLRSDLTRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRRDLEEATLQHE 1187
Query: 658 IEGLS----KVDALCDLGASI-NLMPL--------SMFRRLNLGEVTPTMLSLQMADRSL 704
+ D++ +LG I NL + S F +L L +VT M + A +L
Sbjct: 1188 ATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEF-KLELDDVTSHMEQIIKAKANL 1246
Query: 705 KTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDKGQL 761
+ +ED + ++Y ++ + + T RAK+ + G+L
Sbjct: 1247 EKVSRTLED---QANEYRVKLEEAQRSLND------------FTTQRAKLQTENGEL 1288
Score = 33.5 bits (75), Expect = 2.3
Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 372 YDKLLASNKQ-ISEKVAEIQNHIKVTKLVGASVAKVECVTRGGPNFSNSCTMTNQGFQGQ 430
+DK+LA KQ E +E+++ K + + + K++ + N+ Q +
Sbjct: 1450 FDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEE 1509
Query: 431 SSGLFQQVQEQVDVKDGGKKSLEEL-------------LESFINRMESNYKIQDAAIKNL 477
S L +Q+ E G K++ EL L+S + E++ + ++ I
Sbjct: 1510 ISDLTEQLGE-------GGKNVHELEKIRKQLEVEKLELQSALEEAEASLEHEEGKILRA 1562
Query: 478 KSQFGQ--------LAKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHESKKQVEG 529
+ +F Q LA++ ++ Q K + + ++ + + D TRS KK++EG
Sbjct: 1563 QLEFNQIKAEIERKLAEKDEEMEQAKRN-HLRVVDSLQTSLDAETRSRNEALRVKKKMEG 1621
Query: 530 EKND 533
+ N+
Sbjct: 1622 DLNE 1625
>SMC3_SCHPO (O42649) Structural maintenance of chromosome 3 (Cohesin
complex Psm3 subunit)
Length = 1194
Score = 35.4 bits (80), Expect = 0.62
Identities = 91/418 (21%), Positives = 159/418 (37%), Gaps = 73/418 (17%)
Query: 205 RFIRNCNTYRVSNVSSEAIRLSLFPFSLKDAAEEWLNSQPQGSITTWEDLAE-KFTTRFF 263
R RN + NV + I+ S SL+ E + S Q +DL + + + + F
Sbjct: 660 RDYRNSRLDAIKNVKTYQIKFSDLQESLEKCRSE-IESFDQKITACLDDLQKAQLSLKQF 718
Query: 264 PRALLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWR 323
R + LK +++ + L++ H ELV LE
Sbjct: 719 ERDHI-PLKDELVTITGETTD------------LQESMHHKSRMLELVVLELHTLEQQAN 765
Query: 324 FGLDTASSGEFDALPPQAGYDLIEKMAARAMNSENDR----------QTRRRMFEFEAYD 373
L + S E D L P+ + ++ ++ + N ++ + R+ E+E
Sbjct: 766 -DLKSELSSEMDELDPK-DVEALKSLSGQIENLSHEFDAIIKERAHIEARKTALEYELNT 823
Query: 374 KLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECVTRGGPNFSNSCTMTNQGFQGQSSG 433
L + ++ N I ++L V R + N Q + SSG
Sbjct: 824 NLYLRRNPLKAEIGS-DNRIDESEL--------NSVKRSLLKYENKL----QIIKSSSSG 870
Query: 434 LFQQVQE---QVDVKDGGKKSLEELLESFINRMESNYKI--QDAAIKNL----KSQFGQL 484
L +Q+Q ++ K +SLEEL R+E + KI ++AA ++L K + +
Sbjct: 871 LEEQMQRINSEISDKRNELESLEELQHEVATRIEQDAKINERNAAKRSLLLARKKECNEK 930
Query: 485 AKQMAKIPQGKF------SPNALILSKHENADDVTTRSGRVLHESKKQVEGEKNDKVEEK 538
K + +P+ F S NA++ H+ ++E+ K G N K E+
Sbjct: 931 IKSLGVLPEEAFIKYVSTSSNAIVKKLHK------------INEALKDY-GSVNKKAYEQ 977
Query: 539 DEGVIKKRVSEPVKARVLSTPSPELSKIPF----PKALANKNLDKQFSK-FLEVFKKL 591
K+R S + L +S++ K A + KQ +K F E+F KL
Sbjct: 978 FNNFTKQRDSLLARREELRRSQESISELTTVLDQRKDEAIERTFKQVAKSFSEIFVKL 1035
>KTN1_VULVU (O97961) Kinectin
Length = 1330
Score = 35.4 bits (80), Expect = 0.62
Identities = 38/134 (28%), Positives = 70/134 (51%), Gaps = 15/134 (11%)
Query: 425 QGFQGQSSGLFQQVQEQVDVKDGGKKSLEELLESFINRMESNYK-IQD--AAIKNLKSQF 481
Q Q + L +++++ + KDG KS+EELLE+ + ++ + K IQD I+ LK +
Sbjct: 786 QNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAEVLKVANKEKTIQDLKQEIEALKEEI 845
Query: 482 GQL----AKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHESKKQV--EGEKNDKV 535
G + A+Q++ Q + N L+ K E + + T VL E +K + G+ +
Sbjct: 846 GNIQLEKAQQLSITSQIQELQN-LLKGKEEQMNTMKT----VLEEKEKDLASRGKWLQDL 900
Query: 536 EEKDEGVIKKRVSE 549
+E++E +K + E
Sbjct: 901 QEENES-LKTHIQE 913
Score = 32.0 bits (71), Expect = 6.8
Identities = 53/283 (18%), Positives = 125/283 (43%), Gaps = 54/283 (19%)
Query: 356 SENDRQTRRRMFEFEAYDKLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECVTRGGPN 415
+E D+Q + + D L + ++ K E+++ + L+ A V K++ +
Sbjct: 610 AEKDKQIK------QTEDSLANEHDHLTSKEEELKDIQNMNFLLKAEVQKLQALANE--- 660
Query: 416 FSNSCTMTNQGFQGQSSGLFQQVQEQVDVKDGGKKSLEELLESFINRMESNYKIQDAAIK 475
Q ++ +++Q+ + VKD + LEE L+ I+ +KI + K
Sbjct: 661 ------------QAAAAHELEKMQKSIHVKDDQIRLLEEQLQCEISNKMEEFKILNDQNK 708
Query: 476 NLKSQFGQLAKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVLHESKKQVEGEKNDKV 535
L+ + +L +++S+ N D V+ + +K ++ EK++K+
Sbjct: 709 ALQLEVQKL---------------QILVSEQPNKD--------VVEQMEKCIQ-EKDEKL 744
Query: 536 EEKDE----GVIKKRVSEPVKARVLSTPSPELSKIPFPKALANKNLDKQFSKFLEVFKK- 590
+ +E G+I+ E + + T + L+K A +N F+ +E KK
Sbjct: 745 KTVEELLETGLIQVATKEE-ELNAIRTENSSLTK-EVQDLKAKQNDQVSFASLVEELKKV 802
Query: 591 LHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEE 633
+H +++E+ L+ A+ ++ + +K++ + ++ + + +E
Sbjct: 803 IHEKDGKIKSVEE-LLEAEVLK-VANKEKTIQDLKQEIEALKE 843
>SR54_MYCMY (Q01442) Signal recognition particle protein (Fifty-four
homolog)
Length = 447
Score = 35.0 bits (79), Expect = 0.81
Identities = 100/493 (20%), Positives = 184/493 (37%), Gaps = 97/493 (19%)
Query: 116 GHMTEEEMQAHIEARIQEGITLRLCEQEVENANRSLRELTSAPMSYDYPGSIVFPEGVGN 175
G + MQ IE ++ EN +L+E+ + + D N
Sbjct: 4 GDFLSKRMQKSIEKNMKNSTL------NEENIKETLKEIRLSLLEADV-----------N 46
Query: 176 FKLRPAFINLVSQSQYGGGSSEDPHAHMERFIRNCNTYRVSNVSSEAIRLSLFPFSLKDA 235
+ IN V Q GG SE AH ++ I+ + V+ + E L + + K +
Sbjct: 47 IEAAKEIINNVKQKALGGYISEGASAH-QQMIKIVHEELVNILGKENAPLDI---NKKPS 102
Query: 236 AEEWLNSQPQGSITTWEDLAEKFTTRFFPRALLRKL----KKDIMNFVQSAEENLYEAWE 291
+ Q G TT LA + + LL L I VQ ++ + +E
Sbjct: 103 VVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFE 162
Query: 292 RFKKLLRKCPQHNLTQAELVATFYDGLEYSWRFGLDTASSGEFD-ALPPQAGYDLIEKMA 350
+ K+ + V T LEY A FD + AG ++++
Sbjct: 163 KGKQ-------------DPVKTAEQALEY--------AKENNFDVVILDTAGRLQVDQVL 201
Query: 351 ARAMNSENDRQTRRRMFEFEAYDKLLASNKQISEKVAEIQNHIK-VTKLVGASVAKVECV 409
+ +++ + + + LL + +++ + N KL G V K++
Sbjct: 202 MKELDNLKKKTSPNEI--------LLVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGD 253
Query: 410 TRGGPNFSNS-CTMTNQGFQGQSSG-----------LFQQVQEQVDVKDGGKKSLEELLE 457
RGG S S T F G+ G + ++ D++ ++++E + E
Sbjct: 254 ARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGDIETLFERAVENIDE 313
Query: 458 SFINRMESNYKIQDAAIKNLKSQFGQLAKQ------MAKIPQGKFSPNALILSKHENA-- 509
I + + + +++L++Q Q+AK M +P K S + + ++ + A
Sbjct: 314 RSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLPINKVSESQIQEAQRKLAVF 373
Query: 510 ----DDVT-------------TRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVK 552
D +T +R R++ S + E E N+ + ++G KK+V E K
Sbjct: 374 SILMDSMTLKERRDPRVLKAISRKNRIIKGSGRS-EKEFNELINSFEKG--KKQVLEITK 430
Query: 553 ARVLSTPSPELSK 565
+ S P LSK
Sbjct: 431 -MIKSGRMPNLSK 442
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.139 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,964,096
Number of Sequences: 164201
Number of extensions: 3619751
Number of successful extensions: 14913
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 14847
Number of HSP's gapped (non-prelim): 146
length of query: 822
length of database: 59,974,054
effective HSP length: 119
effective length of query: 703
effective length of database: 40,434,135
effective search space: 28425196905
effective search space used: 28425196905
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0265.4