BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0265.11
(1543 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 483 e-135
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 480 e-134
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 480 e-134
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 359 3e-98
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 353 2e-96
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 346 3e-94
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 311 7e-84
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 295 5e-79
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 280 3e-74
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 197 1e-49
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 197 2e-49
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 197 2e-49
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 196 5e-49
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 196 5e-49
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 194 2e-48
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 192 5e-48
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 190 2e-47
M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860... 150 3e-35
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 149 8e-35
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 143 4e-33
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 483 bits (1243), Expect = e-135
Identities = 299/908 (32%), Positives = 470/908 (50%), Gaps = 40/908 (4%)
Query: 544 QLQVVEATKKGHEIPQELRAVLADFHEVFTKKIQLPPVRSRVHQITLNPEHGPINVRPYR 603
Q+ V K E+P + E T+K+ P++ ++ L E+ + +R Y
Sbjct: 361 QMNKVSNIVKEPELPDIYKEFKDITAETNTEKLP-KPIKGLEFEVELTQENYRLPIRNYP 419
Query: 604 YPHHQKEEIERQVTELLEAGIIRPSMSSFSSPVILVKKKDKSWRMCVDYRALNKATIPDK 663
P + + + ++ + L++GIIR S + + PV+ V KK+ + RM VDY+ LNK P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 664 YPIPIVDELLDELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLM 723
YP+P++++LL ++ G+ IF+K+DLKS YH IRV + D K FR G +EYLVMP+G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539
Query: 724 NAPATFQAIMNDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQS 783
APA FQ +N I V+ + DDILI+SKS EH H+K VL L + + + NQ+
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599
Query: 784 KCKFGCAQIDYLGHIISGAGVSVDPEKVQCIVEWPEPKNVKGVRGFLGLTGYYRKFIKNY 843
KC+F +Q+ ++G+ IS G + E + +++W +PKN K +R FLG Y RKFI
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 844 GKMAKPLTELTKKD-NFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGI 902
++ PL L KKD + W QA +K + S PVL DF K +E DA+ +
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 903 GAVLMQQRQ-----PIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLG--KAFTV 955
GAVL Q+ P+ Y+S +S L SV +KE++A++ ++HWRHYL + F +
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 956 YTDHKSLKHFLQQKISSPDQQ---CWLAKLLGYQFEVKYKPGQENKAADALSRRGDESD- 1011
TDH++L + + S P+ + W L + FE+ Y+PG N ADALSR DE++
Sbjct: 780 LTDHRNLIGRITNE-SEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEP 838
Query: 1012 -----------FFSLVSFPLWDD-RKKLLEEIASDPYIKNLLQDVQQDPQSKPGFSVLQG 1059
F + +S + DD + +++ E +D + NLL + +D + + + G
Sbjct: 839 IPKDSEDNSINFVNQIS--ITDDFKNQVVTEYTNDTKLLNLLNN--EDKRVEENIQLKDG 894
Query: 1060 VLLYQGRLVLSPTSPSIP-WLLQEYHGSPTGGHSGFLRTYRRLAESLYWVGMQRTVRDFV 1118
+L+ +L P + ++++YH H G + W G+++ ++++V
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
Query: 1119 RACDTCQRQKYSAMSPGGLLQPFPVPNAVWEDLSLDFIIGLPKSKGYEAILVVVDRLSKY 1178
+ C TCQ K P G LQP P WE LS+DFI LP+S GY A+ VVVDR SK
Sbjct: 955 QNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKM 1014
Query: 1179 SHFILLKHPYTAKSIAEVFVREIVRLHGIPNTVKSDRDPIFVSHFWSELFKLQGTKLKMS 1238
+ + TA+ A +F + ++ G P + +D D IF S W + +K S
Sbjct: 1015 AILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFS 1074
Query: 1239 SSYHPETDGQTEVINRCLESYLRCFASDHPKTWSFWVPWAEFWYNSTFHCSIGQTPFEVV 1298
Y P+TDGQTE N+ +E LRC S HP TW + + YN+ H + TPFE+V
Sbjct: 1075 LPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
Query: 1299 YGRKAPPIIRFLTNETKVVAVALELSERDEALKQLRTHLQRAQEQMASYANKKRRDL-SF 1357
+ + P + L + E + + ++ HL +M Y + K +++ F
Sbjct: 1135 H--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEF 1192
Query: 1358 DIGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEDKIGTVAYKLKLP--VESRIHPV 1415
G+ V +K R + + KLA F GPF + K G Y+L LP ++
Sbjct: 1193 QPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSST 1248
Query: 1416 FHVSLLKR 1423
FHVS L++
Sbjct: 1249 FHVSHLEK 1256
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 480 bits (1236), Expect = e-134
Identities = 298/908 (32%), Positives = 470/908 (50%), Gaps = 40/908 (4%)
Query: 544 QLQVVEATKKGHEIPQELRAVLADFHEVFTKKIQLPPVRSRVHQITLNPEHGPINVRPYR 603
Q+ V K E+P + E T+K+ P++ ++ L E+ + +R Y
Sbjct: 361 QMNKVSNIVKEPELPDIYKEFKDITAETNTEKLP-KPIKGLEFEVELTQENYRLPIRNYP 419
Query: 604 YPHHQKEEIERQVTELLEAGIIRPSMSSFSSPVILVKKKDKSWRMCVDYRALNKATIPDK 663
P + + + ++ + L++GIIR S + + PV+ V KK+ + RM VDY+ LNK P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 664 YPIPIVDELLDELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLM 723
YP+P++++LL ++ G+ IF+K+DLKS YH IRV + D K FR G +EYLVMP+G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539
Query: 724 NAPATFQAIMNDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQS 783
APA FQ +N I V+ + D+ILI+SKS EH H+K VL L + + + NQ+
Sbjct: 540 IAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599
Query: 784 KCKFGCAQIDYLGHIISGAGVSVDPEKVQCIVEWPEPKNVKGVRGFLGLTGYYRKFIKNY 843
KC+F +Q+ ++G+ IS G + E + +++W +PKN K +R FLG Y RKFI
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 844 GKMAKPLTELTKKD-NFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGI 902
++ PL L KKD + W QA +K + S PVL DF K +E DA+ +
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 903 GAVLMQQRQ-----PIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLG--KAFTV 955
GAVL Q+ P+ Y+S +S L SV +KE++A++ ++HWRHYL + F +
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 956 YTDHKSLKHFLQQKISSPDQQ---CWLAKLLGYQFEVKYKPGQENKAADALSRRGDESD- 1011
TDH++L + + S P+ + W L + FE+ Y+PG N ADALSR DE++
Sbjct: 780 LTDHRNLIGRITNE-SEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEP 838
Query: 1012 -----------FFSLVSFPLWDD-RKKLLEEIASDPYIKNLLQDVQQDPQSKPGFSVLQG 1059
F + +S + DD + +++ E +D + NLL + +D + + + G
Sbjct: 839 IPKDSEDNSINFVNQIS--ITDDFKNQVVTEYTNDTKLLNLLNN--EDKRVEENIQLKDG 894
Query: 1060 VLLYQGRLVLSPTSPSIP-WLLQEYHGSPTGGHSGFLRTYRRLAESLYWVGMQRTVRDFV 1118
+L+ +L P + ++++YH H G + W G+++ ++++V
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
Query: 1119 RACDTCQRQKYSAMSPGGLLQPFPVPNAVWEDLSLDFIIGLPKSKGYEAILVVVDRLSKY 1178
+ C TCQ K P G LQP P WE LS+DFI LP+S GY A+ VVVDR SK
Sbjct: 955 QNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKM 1014
Query: 1179 SHFILLKHPYTAKSIAEVFVREIVRLHGIPNTVKSDRDPIFVSHFWSELFKLQGTKLKMS 1238
+ + TA+ A +F + ++ G P + +D D IF S W + +K S
Sbjct: 1015 AILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFS 1074
Query: 1239 SSYHPETDGQTEVINRCLESYLRCFASDHPKTWSFWVPWAEFWYNSTFHCSIGQTPFEVV 1298
Y P+TDGQTE N+ +E LRC S HP TW + + YN+ H + TPFE+V
Sbjct: 1075 LPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
Query: 1299 YGRKAPPIIRFLTNETKVVAVALELSERDEALKQLRTHLQRAQEQMASYANKKRRDL-SF 1357
+ + P + L + E + + ++ HL +M Y + K +++ F
Sbjct: 1135 H--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEF 1192
Query: 1358 DIGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEDKIGTVAYKLKLP--VESRIHPV 1415
G+ V +K R + + KLA F GPF + K G Y+L LP ++
Sbjct: 1193 QPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSST 1248
Query: 1416 FHVSLLKR 1423
FHVS L++
Sbjct: 1249 FHVSHLEK 1256
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 480 bits (1236), Expect = e-134
Identities = 298/908 (32%), Positives = 470/908 (50%), Gaps = 40/908 (4%)
Query: 544 QLQVVEATKKGHEIPQELRAVLADFHEVFTKKIQLPPVRSRVHQITLNPEHGPINVRPYR 603
Q+ V K E+P + E T+K+ P++ ++ L E+ + +R Y
Sbjct: 361 QMNKVSNIVKEPELPDIYKEFKDITAETNTEKLP-KPIKGLEFEVELTQENYRLPIRNYP 419
Query: 604 YPHHQKEEIERQVTELLEAGIIRPSMSSFSSPVILVKKKDKSWRMCVDYRALNKATIPDK 663
P + + + ++ + L++GIIR S + + PV+ V KK+ + RM VDY+ LNK P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 664 YPIPIVDELLDELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLM 723
YP+P++++LL ++ G+ IF+K+DLKS YH IRV + D K FR G +EYLVMP+G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539
Query: 724 NAPATFQAIMNDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQS 783
APA FQ +N I V+ + D+ILI+SKS EH H+K VL L + + + NQ+
Sbjct: 540 IAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599
Query: 784 KCKFGCAQIDYLGHIISGAGVSVDPEKVQCIVEWPEPKNVKGVRGFLGLTGYYRKFIKNY 843
KC+F +Q+ ++G+ IS G + E + +++W +PKN K +R FLG Y RKFI
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 844 GKMAKPLTELTKKD-NFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGI 902
++ PL L KKD + W QA +K + S PVL DF K +E DA+ +
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 903 GAVLMQQRQ-----PIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLG--KAFTV 955
GAVL Q+ P+ Y+S +S L SV +KE++A++ ++HWRHYL + F +
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 956 YTDHKSLKHFLQQKISSPDQQ---CWLAKLLGYQFEVKYKPGQENKAADALSRRGDESD- 1011
TDH++L + + S P+ + W L + FE+ Y+PG N ADALSR DE++
Sbjct: 780 LTDHRNLIGRITNE-SEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEP 838
Query: 1012 -----------FFSLVSFPLWDD-RKKLLEEIASDPYIKNLLQDVQQDPQSKPGFSVLQG 1059
F + +S + DD + +++ E +D + NLL + +D + + + G
Sbjct: 839 IPKDSEDNSINFVNQIS--ITDDFKNQVVTEYTNDTKLLNLLNN--EDKRVEENIQLKDG 894
Query: 1060 VLLYQGRLVLSPTSPSIP-WLLQEYHGSPTGGHSGFLRTYRRLAESLYWVGMQRTVRDFV 1118
+L+ +L P + ++++YH H G + W G+++ ++++V
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
Query: 1119 RACDTCQRQKYSAMSPGGLLQPFPVPNAVWEDLSLDFIIGLPKSKGYEAILVVVDRLSKY 1178
+ C TCQ K P G LQP P WE LS+DFI LP+S GY A+ VVVDR SK
Sbjct: 955 QNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKM 1014
Query: 1179 SHFILLKHPYTAKSIAEVFVREIVRLHGIPNTVKSDRDPIFVSHFWSELFKLQGTKLKMS 1238
+ + TA+ A +F + ++ G P + +D D IF S W + +K S
Sbjct: 1015 AILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFS 1074
Query: 1239 SSYHPETDGQTEVINRCLESYLRCFASDHPKTWSFWVPWAEFWYNSTFHCSIGQTPFEVV 1298
Y P+TDGQTE N+ +E LRC S HP TW + + YN+ H + TPFE+V
Sbjct: 1075 LPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
Query: 1299 YGRKAPPIIRFLTNETKVVAVALELSERDEALKQLRTHLQRAQEQMASYANKKRRDL-SF 1357
+ + P + L + E + + ++ HL +M Y + K +++ F
Sbjct: 1135 H--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEF 1192
Query: 1358 DIGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEDKIGTVAYKLKLP--VESRIHPV 1415
G+ V +K R + + KLA F GPF + K G Y+L LP ++
Sbjct: 1193 QPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSST 1248
Query: 1416 FHVSLLKR 1423
FHVS L++
Sbjct: 1249 FHVSHLEK 1256
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 359 bits (922), Expect = 3e-98
Identities = 193/453 (42%), Positives = 272/453 (59%), Gaps = 7/453 (1%)
Query: 560 ELRAVLADFHEVFTKKIQLPPVRSRVHQITLNPEHGPINVRPYRYPHHQKEEIERQVTEL 619
+L+ +L F + K+ + + + + + PI + Y + E+E QV E+
Sbjct: 170 KLKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEM 229
Query: 620 LEAGIIRPSMSSFSSPVILVKKKDKS-----WRMCVDYRALNKATIPDKYPIPIVDELLD 674
L G+IR S S ++SP +V KK + +R+ +DYR LN+ TIPD+YPIP +DE+L
Sbjct: 230 LNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILG 289
Query: 675 ELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQAIMN 734
+L F+ IDL G+HQI + EE I KT F T +GHYEYL MPFGL NAPATFQ MN
Sbjct: 290 KLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMN 349
Query: 735 DIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQIDY 794
+I RP L K LV+ DDI+I+S SL EH + ++LV T L + KC+F + ++
Sbjct: 350 NILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANF 409
Query: 795 LGHIISGAGVSVDPEKVQCIVEWPEPKNVKGVRGFLGLTGYYRKFIKNYGKMAKPLTELT 854
LGHI++ G+ +P KV+ IV +P P K +R FLGLTGYYRKFI NY +AKP+T
Sbjct: 410 LGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCL 469
Query: 855 KKDN--FTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVLMQQRQP 912
KK T E +AF KLK ++ P+L LPDF+K F + DA+ +GAVL Q P
Sbjct: 470 KKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHP 529
Query: 913 IAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLKHFLQQKISS 972
I++ S+ L++ L S EKEL+A+V + +RHYLLG+ F + +DH+ L+ K
Sbjct: 530 ISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPG 589
Query: 973 PDQQCWLAKLLGYQFEVKYKPGQENKAADALSR 1005
+ W +L YQF++ Y G+EN ADALSR
Sbjct: 590 AKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 353 bits (906), Expect = 2e-96
Identities = 190/468 (40%), Positives = 278/468 (58%), Gaps = 10/468 (2%)
Query: 555 HEIPQELRAVLADFHEV-FTKKIQLPPVRSRVHQITLNPEHGPINVRPYRYPHHQKEEIE 613
+E Q L A+L +H++ + + +L H T+N +H Y YP ++E+E
Sbjct: 167 NEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKH--TINTKHNLPLYSKYSYPQAYEQEVE 224
Query: 614 RQVTELLEAGIIRPSMSSFSSPVILVKKKD-----KSWRMCVDYRALNKATIPDKYPIPI 668
Q+ ++L GIIR S S ++SP+ +V KK + +R+ +DYR LN+ T+ D++PIP
Sbjct: 225 SQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPN 284
Query: 669 VDELLDELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPAT 728
+DE+L +L F+ IDL G+HQI + E + KT F T +GHYEYL MPFGL NAPAT
Sbjct: 285 MDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPAT 344
Query: 729 FQAIMNDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFG 788
FQ MNDI RP L K LV+ DDI+++S SL EH L LV L + KC+F
Sbjct: 345 FQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFL 404
Query: 789 CAQIDYLGHIISGAGVSVDPEKVQCIVEWPEPKNVKGVRGFLGLTGYYRKFIKNYGKMAK 848
+ +LGH+++ G+ +PEK++ I ++P P K ++ FLGLTGYYRKFI N+ +AK
Sbjct: 405 KQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAK 464
Query: 849 PLTELTKKDN--FTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVL 906
P+T+ KK+ T E AF KLK +++ P+L +PDF K F + DA+ +GAVL
Sbjct: 465 PMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVL 524
Query: 907 MQQRQPIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLKHFL 966
Q P++Y S+ L+ + S EKEL+A+V + +RHYLLG+ F + +DH+ L
Sbjct: 525 SQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLY 584
Query: 967 QQKISSPDQQCWLAKLLGYQFEVKYKPGQENKAADALSRRGDESDFFS 1014
+ K + W KL + F++KY G+EN ADALSR E + S
Sbjct: 585 RMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLS 632
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 346 bits (887), Expect = 3e-94
Identities = 192/467 (41%), Positives = 276/467 (58%), Gaps = 22/467 (4%)
Query: 561 LRAVLADFHEVFTKKIQLPPVRSRVHQITLNPEHGPINVRPYRYPHHQKEEIERQVTELL 620
L ++L +F +F + V + V PI + Y YP + + E+ERQ+ ELL
Sbjct: 88 LNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELL 147
Query: 621 EAGIIRPSMSSFSSPVILVKKK-----DKSWRMCVDYRALNKATIPDKYPIPIVDELLDE 675
+ GIIRPS S ++SP+ +V KK +K +RM VD++ LN TIPD YPIP ++ L
Sbjct: 148 QDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLAS 207
Query: 676 LNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQAIMND 735
L A F+ +DL SG+HQI + E DIPKT F T NG YE+L +PFGL NAPA FQ +++D
Sbjct: 208 LGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDD 267
Query: 736 IFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQIDYL 795
I R ++ K V+ DDI+++S+ H +L+LVL L + N K F Q+++L
Sbjct: 268 ILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFL 327
Query: 796 GHIISGAGVSVDPEKVQCIVEWPEPKNVKGVRGFLGLTGYYRKFIKNYGKMAKPLTELTK 855
G+I++ G+ DP+KV+ I E P P +VK ++ FLG+T YYRKFI++Y K+AKPLT LT+
Sbjct: 328 GYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTR 387
Query: 856 ------------KDNFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIG 903
K T E A Q+F+ LK+++ SS +LA P F K F + DA+ IG
Sbjct: 388 GLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIG 447
Query: 904 AVLMQQRQ----PIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLGK-AFTVYTD 958
AVL Q Q PIAY S++L+ + EKE++A++ + + R YL G VYTD
Sbjct: 448 AVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTD 507
Query: 959 HKSLKHFLQQKISSPDQQCWLAKLLGYQFEVKYKPGQENKAADALSR 1005
H+ L L + + + W A++ Y E+ YKPG+ N ADALSR
Sbjct: 508 HQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSR 554
Score = 53.1 bits (126), Expect = 6e-06
Identities = 83/339 (24%), Positives = 131/339 (38%), Gaps = 48/339 (14%)
Query: 1091 HSGFLRTYRRLAESLYWVGMQRTVRDFVRACDTCQRQKYSAMSPGGLLQPFPVPNAVWED 1150
H G +L E Y+ M T+R +C C+ KY LQP P+PN E
Sbjct: 705 HRGPTEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYKYERHPNKPNLQPTPIPNYPCEI 764
Query: 1151 LSLDFIIGLPKSKGYEAILVVVDRLSKYSHFILLKHPYTAKSIAEVFVRE--IVRLH--G 1206
L +D I L K L +D+ SK++ L +S A V +RE + LH
Sbjct: 765 LHID-IFALEK----RLYLSCIDKFSKFAKLFHL------QSKASVHLRETLVEALHYFT 813
Query: 1207 IPNTVKSDRDPIFVSHFWSELFKLQGTKLKMSSSYHPETDGQTEVINRCLESYLRCFASD 1266
P + SD + + + L + + E +GQ E + RC +
Sbjct: 814 APKVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYRCLKDE 873
Query: 1267 HPKTWSF-WVPWAEFWYNSTFHCSIGQTPFEVVYGRKAPPIIRFLTNETKVVAVALELSE 1325
P V A YN++ H + P +V + R + + LT+
Sbjct: 874 LPTFKPVELVHIAVDRYNTSVHSVTNRKPADVFFDRSSRVNYQGLTD------------F 921
Query: 1326 RDEALKQLRTHLQRAQEQMASYANKKRRD--LSFDIGEWVFLKLRPHRQHSVVKRINQKL 1383
R + L+ ++ ++ Q + + A K RD S+ G+ VF+ K+I K
Sbjct: 922 RRQTLEDIKGLIEYKQIR-GNMARNKNRDEPKSYGPGDEVFV---------ANKQIKTKE 971
Query: 1384 AARFYGPFQIEDKIGTVAYKLKLPVESRIHPVFHVSLLK 1422
ARF ED K+ V++R +FH S L+
Sbjct: 972 KARFRCEKVQEDN--------KITVKTRSGKIFHKSDLR 1002
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 311 bits (798), Expect = 7e-84
Identities = 239/825 (28%), Positives = 388/825 (46%), Gaps = 82/825 (9%)
Query: 596 PINVRPYRYPHHQKEEIERQVTELLEAGIIRPSMSSFSSPVILVKKKDKSWRMCVDYRAL 655
PI +P P K EI + + ++L +IR S S +SSPV+LVKKKD S RMC+DYR +
Sbjct: 942 PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 1001
Query: 656 NKATIPDKYPIPIVDELLDELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEY 715
NK + +P+P ++ L L G +++ D+ +G+ QI + E+ T F + +E+
Sbjct: 1002 NKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEW 1061
Query: 716 LVMPFGLMNAPATFQAIMNDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLS 775
V+PFGL+ +PA FQ M +I L V+ DD+LI SK + +H +K LT +
Sbjct: 1062 NVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRK 1121
Query: 776 NSFVANQSKCKFGCAQIDYLGHIISGAGVSVDPEKVQCIVEWPEPKNVKGVRGFLGLTGY 835
+ SKC +++YLGH ++ GV K + ++ P NVK ++ FLGL GY
Sbjct: 1122 SGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGY 1181
Query: 836 YRKFIKNYGKMAKPLTEL-TKKDNFTWGEEAKQAFHKLKTVMTSSPVLALPDF------D 888
YRKFI N+ ++A LT L + K + W +E + AF +LK ++ +PVLA PD D
Sbjct: 1182 YRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGD 1241
Query: 889 KSFEVECDAAGRGIGAVLMQ-----QRQPIAYFSKALSNGNLTKSVYEKELMALVLCIQH 943
+ F + DA+ +GIGAVL Q Q+ PIA+ SKALS + + E +A++ ++
Sbjct: 1242 RPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRR 1301
Query: 944 WRHYLLGKAFTVYTDHKSLKHFLQQKISSPDQQCWLAKLLGYQFEVKYKPGQENKAADAL 1003
++ + G A TV+TDHK L L+ + W ++L + ++ Y G+ N ADAL
Sbjct: 1302 FKTIIYGTAITVFTDHKPLISLLKGSPLADRLWRWSIEILEFDVKIVYLAGKANAVADAL 1361
Query: 1004 SRRG------DESDFFSLVS--------FPLWDDRKKLLEEI-ASDPYIKNLLQDVQ--- 1045
SR G +E L S P D LE + D K ++ ++
Sbjct: 1362 SRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLKGEDEGWKEVIAALEGGK 1421
Query: 1046 ----------QDPQSKPGFSVLQGVLL-----YQGRLVLSPTSPSIPWLLQEYHGSPTGG 1090
+ S + ++ GVL Q R V+ P P LL+E H G
Sbjct: 1422 TKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVV-PEKIRTP-LLKELHEGMLAG 1479
Query: 1091 HSGFLRTYRRLAESLYWVGMQRTVRDFVRACDTC-----QRQKYSAMSPGGLLQPFPVPN 1145
H G + +R + YW M+ V + VR C C + S+++P + P +
Sbjct: 1480 HFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIVA 1539
Query: 1146 AVWEDLSLDFIIGLPKSKGYEAILVVVDRLSKYSHFILLKHPYTAKSIAEVFVREIVRLH 1205
D+ L +G IL ++D +KY + + A+++ + FV
Sbjct: 1540 CDLMDVGLSV-------QGNRYILTIIDLFTKYGTAVPIPDK-KAETVLKAFVERWAIGE 1591
Query: 1206 G-IPNTVKSDRDPIFVSHFWSELFKLQGTKLKMSSSYHPETDGQTEVINRCLESYLRCFA 1264
G IP + +D+ FV+ +++ + + + Y+ +G E N+ + ++
Sbjct: 1592 GRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMK-KK 1650
Query: 1265 SDHPKTWSFWVPWAEFWYNSTFHCSIGQTPFEVVYGRKAPPIIRFLTNETKVVAVALELS 1324
+ P W V +A + YN+ H + G+TP +++GR + + AV + +
Sbjct: 1651 TAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGED----AVGINYA 1706
Query: 1325 ERDE-----------ALKQLRTHLQRAQEQMAS-----YANKKRR 1353
+ DE K + H R QE S YA+KK R
Sbjct: 1707 DMDEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQKYASKKHR 1751
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 295 bits (756), Expect = 5e-79
Identities = 195/628 (31%), Positives = 324/628 (51%), Gaps = 55/628 (8%)
Query: 400 QVANVELLILIDSGASHNFISP-KITSALGLVITPITTRSIKLGDGHKVVTRGICRGIKA 458
++A L +LID+ A+ N+I P K + V +P + SI ++ + + + K
Sbjct: 18 RLAGRTLKMLIDTDAAKNYIRPVKELKNVMPVASPFSVSSIH--GSTEIKHKCLMKVFK- 74
Query: 459 KLGSIEITIDALVLELGGLDLVLGVSWLSTLGKVIMDWKLLTMQFVYGEQVVQLQGMRGK 518
I+ L+ L D ++G+ L+ G ++ E ++ QG+ K
Sbjct: 75 -----HISPFFLLDSLNAFDAIIGLDLLTQAG----------VKLNLAEDSLEYQGIAEK 119
Query: 519 DSYQSNLHSFLSDTHGREQMEWWGPQLQVVEATKKGHEIPQELRAVLADFHEVFTKKIQL 578
Y S +D + + V ++ KK E + + + F+ +
Sbjct: 120 LHYFSCPSVNFTDVN----------DIVVPDSVKK------EFKDTIIRRKKAFSTTNEA 163
Query: 579 PPVRSRVHQITLNPEHGPINVRPYRYPHHQKEEIERQVTELLEAGIIRPSMSSFSSPVIL 638
P + V ++ P+ R Y + + +V +LL+ GIIRPS S ++SP +
Sbjct: 164 LPFNTAVTATIRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWV 223
Query: 639 VKKK------DKSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGAVIFSKIDLKSGYH 692
V KK + + R+ +D+R LN+ TIPD+YP+P + +L L A F+ +DLKSGYH
Sbjct: 224 VDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYH 283
Query: 693 QIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQAIMNDIFRPYLRKFVLVFFDDI 752
QI + E D KT+F + G YE+ +PFGL NA + FQ ++D+ R + K V+ DD+
Sbjct: 284 QIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDV 343
Query: 753 LIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQIDYLGHIISGAGVSVDPEKVQ 812
+I+S++ +H H+ VL L+ + +Q K +F ++YLG I+S G DPEKV+
Sbjct: 344 IIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVK 403
Query: 813 CIVEWPEPKNVKGVRGFLGLTGYYRKFIKNYGKMAKPLTELTKKDN------------FT 860
I E+PEP V VR FLGL YYR FIK++ +A+P+T++ K +N
Sbjct: 404 AIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVE 463
Query: 861 WGEEAKQAFHKLKTVMTSSPV-LALPDFDKSFEVECDAAGRGIGAVLMQQRQPIAYFSKA 919
+ E + AF +L+ ++ S V L PDF K F++ DA+ GIGAVL Q+ +PI S+
Sbjct: 464 FNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRT 523
Query: 920 LSNGNLTKSVYEKELMALVLCIQHWRHYLLG-KAFTVYTDHKSLKHFLQQKISSPDQQCW 978
L + E+EL+A+V + +++L G + ++TDH+ L + + ++ + W
Sbjct: 524 LKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRW 583
Query: 979 LAKLLGYQFEVKYKPGQENKAADALSRR 1006
+ + + +V YKPG+EN ADALSR+
Sbjct: 584 KSYIDQHNAKVFYKPGKENFVADALSRQ 611
Score = 62.4 bits (150), Expect = 9e-09
Identities = 60/280 (21%), Positives = 106/280 (37%), Gaps = 37/280 (13%)
Query: 1091 HSGFLRTYRRLAESLYWVGMQRTVRDFVRACDTCQRQKYSAMSPGGLLQPFPVPNAVWED 1150
H +++ Y+ M ++ V C C + KY L P+P+ E
Sbjct: 750 HRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGETPIPSYTGEM 809
Query: 1151 LSLDFIIGLPKSKGYEAILVVVDRLSKYSHFILLKHPYTAKSIAEVFVREIVRLHGIPN- 1209
+ +D S + L +D+ SKY+ + P +++I ++ + ++ PN
Sbjct: 810 VHIDIF-----STDRKLFLTCIDKFSKYA----IVQPVVSRTIVDITAPLLQIINLFPNI 860
Query: 1210 -TVKSDRDPIFVSHFWSELFKLQ-GTKLKMSSSYHPETDGQTEVINRCLESYLRCFASDH 1267
TV D +P F S + + K G + + H ++GQ E + L RC D
Sbjct: 861 KTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLDK 920
Query: 1268 PKTWSF-WVPWAEFWYNSTFHCSIGQTPFEVVYGRKAPPIIRFLTNETKVVAVALELSER 1326
+ + A YN T H + P EVV+
Sbjct: 921 KTNDTVELILRATIEYNKTVHSVTRERPIEVVH------------------------PGA 956
Query: 1327 DEALKQLRTHLQRAQEQMASYANKKRRDLSFDIGEWVFLK 1366
E +++ L +AQ+ N R++ F++GE VF+K
Sbjct: 957 HERCLEIKARLVKAQQDSIGRNNPSRQNRVFEVGERVFVK 996
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 280 bits (715), Expect = 3e-74
Identities = 158/457 (34%), Positives = 245/457 (53%), Gaps = 11/457 (2%)
Query: 560 ELRAVLADFHEVFTKKIQLPPVRSRVHQITLNPEHGPINVRPYRYPHHQKEEIERQVTEL 619
+L + +++ ++F + + V + Q + P+ + YR PH Q EEI+ QV +L
Sbjct: 278 QLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVEEIQAQVQKL 337
Query: 620 LEAGIIRPSMSSFSSPVILVKKKD------KSWRMCVDYRALNKATIPDKYPIPIVDELL 673
++ I+ PS+S ++SP++LV KK K WR+ +DYR +NK + DK+P+P +D++L
Sbjct: 338 IKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDIL 397
Query: 674 DELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQAIM 733
D+L A FS +DL SG+HQI + E T+F T NG Y + +PFGL AP +FQ +M
Sbjct: 398 DQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMM 457
Query: 734 NDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQID 793
F ++ DD+++ S +L V + + KC F ++
Sbjct: 458 TIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVT 517
Query: 794 YLGHIISGAGVSVDPEKVQCIVEWPEPKNVKGVRGFLGLTGYYRKFIKNYGKMAKPLTEL 853
+LGH + G+ D +K I +P P + R F+ YYR+FIKN+ ++ +T L
Sbjct: 518 FLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRL 577
Query: 854 TKKD-NFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVLMQQRQ- 911
KK+ F W +E ++AF LK+ + + +L PDF K F + DA+ + GAVL Q
Sbjct: 578 CKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNG 637
Query: 912 ---PIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLKHFLQQ 968
P+AY S+A + G KS E+EL A+ I H+R Y+ GK FTV TDH+ L +
Sbjct: 638 HQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSM 697
Query: 969 KISSPDQQCWLAKLLGYQFEVKYKPGQENKAADALSR 1005
S +L Y F V+Y G++N ADALSR
Sbjct: 698 VNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSR 734
Score = 101 bits (251), Expect = 2e-20
Identities = 80/326 (24%), Positives = 152/326 (46%), Gaps = 24/326 (7%)
Query: 1079 LLQEYHGSPT-GGHSGFLRTYRRLAESLYWVGMQRTVRDFVRACDTCQRQKYS--AMSPG 1135
+L H P GGH+G +T ++ YW M + ++++VR C CQ+ K + +P
Sbjct: 896 ILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPM 955
Query: 1136 GLLQPFPVPNAVWEDLSLDFIIGLPKSK-GYEAILVVVDRLSKYSHFILLKHPYTAKSIA 1194
+ + P ++ + +D I LPKS+ G E + ++ L+KY I + + +AK++A
Sbjct: 956 TITE---TPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANK-SAKTVA 1011
Query: 1195 EVFVREIVRLHGIPNTVKSDRDPIFVSHFWSELFKLQGTKLKMSSSYHPETDGQTEVINR 1254
+ + +G T +D + + ++L K K S+++H +T G E +R
Sbjct: 1012 KAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHR 1071
Query: 1255 CLESYLRCFASDHPKTWSFWVPWAEFWYNSTFHCSIGQTPFEVVYGRKA--PPIIRFLTN 1312
L Y+R + S W W+ + + +N+T P+E+V+GR + P L +
Sbjct: 1072 TLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHS 1131
Query: 1313 ETKVVAV---ALELSERDE-ALKQLRTHLQRAQEQMASYANKKRRDLSFDIGEWVFLKLR 1368
+ + A E R E A + R L+ +E+ + K +D+ ++G+ V L+
Sbjct: 1132 IEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLR-- 1189
Query: 1369 PHRQHSVVKRINQKLAARFYGPFQIE 1394
+ KL ++ GP++IE
Sbjct: 1190 --------NEVGHKLDFKYTGPYKIE 1207
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 197 bits (502), Expect = 1e-49
Identities = 167/631 (26%), Positives = 289/631 (45%), Gaps = 32/631 (5%)
Query: 404 VELLILIDSGASHNFISPKITSALGLVITPITTRSIKLGDGHKVVTRGICRGIKAKLGSI 463
+EL +D+GAS I+ K I +K+ DG + +CR I +
Sbjct: 40 IELHCFVDTGASL-CIASKFVIPEEHWINAERPIMVKIADGSSITINKVCRDIDLIIAGE 98
Query: 464 EITIDALVLELGGLDLVLGVSWLSTLGKVIM--DWKLLTMQFVYGEQVVQL-QGMR-GKD 519
I + + G+D ++G ++ I D + T Y + +L + +R G +
Sbjct: 99 IFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKDRTYPVHIAKLTRAVRVGTE 158
Query: 520 SYQSNLHSFLSDTHGREQMEWWGPQLQVVEATKKGHE----IPQELRAVLADFHEVFTKK 575
+ ++ S T E + ++ ++ ++ E I Q+ + + E +
Sbjct: 159 GFLESMKK-RSKTQQPEPVNISTNKIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSE 217
Query: 576 IQLPPVRSRVHQ---ITLNPEHGPINVRPYRYPHHQKEEIERQVTELLEAGIIRPSMSSF 632
L P +++ I L+ I V+P +Y +EE ++Q+ ELL+ +I+PS S
Sbjct: 218 NPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPH 277
Query: 633 SSPVILV----KKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGAVIFSKIDLK 688
+P LV +K+ RM V+Y+A+NKAT+ D Y P DELL + G IFS D K
Sbjct: 278 MAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCK 337
Query: 689 SGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQAIMNDIFRPYLRKFVLVF 748
SG+ Q+ + +E P T F GHYE+ V+PFGL AP+ FQ M++ FR + RKF V+
Sbjct: 338 SGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVY 396
Query: 749 FDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQIDYLGHIISGAGVSVDP 808
DDIL++S + +H H+ ++L + + ++ K + +I++LG I
Sbjct: 397 VDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQG 456
Query: 809 EKVQCIVEWPEP-KNVKGVRGFLGLTGYYRKFIKNYGKMAKPL-TELTKKDNFTWGEEAK 866
++ I ++P+ ++ K ++ FLG+ Y +I ++ KPL +L + + W +E
Sbjct: 457 HILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDT 516
Query: 867 QAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVL--------MQQRQPIAYFSK 918
K+K + P L P ++ +E DA+ G +L Y S
Sbjct: 517 LYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASG 576
Query: 919 ALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLKHFLQQKISSPDQQ-- 976
+ +KE +A++ I+ + YL F + TD+ K F+ +
Sbjct: 577 SFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGR 636
Query: 977 --CWLAKLLGYQFEVKYKPGQENKAADALSR 1005
W A L Y F+V++ G +N AD LSR
Sbjct: 637 NIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 667
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 197 bits (501), Expect = 2e-49
Identities = 165/646 (25%), Positives = 288/646 (44%), Gaps = 55/646 (8%)
Query: 404 VELLILIDSGASHNFISPKITSALGLVITPITTRSIKLGDGHKVVTRGICRGIKAKLGSI 463
+EL +D+GAS I+ K + +K+ DG + +C+ I + +
Sbjct: 39 IELHCFVDTGASL-CIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIVGV 97
Query: 464 EITIDALVLELGGLDLVLGVSWLSTLGKVIM--DWKLLTMQFVYGEQVVQLQGMRGKDSY 521
I + + G+D ++G ++ I D + T Y + +L +
Sbjct: 98 IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTR-----AV 152
Query: 522 QSNLHSFLSDTHGREQMEWWGPQLQVVEATKKGHEIPQELRAVLADFHEVFTKKIQLPPV 581
+ FL R + + Q + V + E P E A+L++ + +K+ +
Sbjct: 153 RVGTEGFLESMKKRSKTQ----QPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQ 208
Query: 582 RSRVHQ------------------------ITLNPEHGPINVRPYRYPHHQKEEIERQVT 617
R + + I L+ I V+P +Y +EE ++Q+
Sbjct: 209 RMQKTEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIK 268
Query: 618 ELLEAGIIRPSMSSFSSPVILVKKKDKSWR----MCVDYRALNKATIPDKYPIPIVDELL 673
ELL+ +I+PS S +P LV + ++ R M V+Y+A+NKAT+ D Y +P DELL
Sbjct: 269 ELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELL 328
Query: 674 DELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQAIM 733
+ G IFS D KSG+ Q+ + +E P T F GHYE+ V+PFGL AP+ FQ M
Sbjct: 329 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 388
Query: 734 NDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQID 793
++ FR + RKF V+ DDI+++S + +H H+ ++L + + ++ K + +I+
Sbjct: 389 DEAFRVF-RKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKIN 447
Query: 794 YLGHIISGAGVSVDPEKVQCIVEWPEP-KNVKGVRGFLGLTGYYRKFIKNYGKMAKPL-T 851
+LG I ++ I ++P+ ++ K ++ FLG+ Y +I N +M +PL
Sbjct: 448 FLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQA 507
Query: 852 ELTKKDNFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVL----- 906
+L + + W +E K+K + P L P ++ +E DA+ G +L
Sbjct: 508 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKI 567
Query: 907 ---MQQRQPIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLK 963
Y S + +KE +A++ I+ + YL F + TD+ K
Sbjct: 568 NEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFK 627
Query: 964 HFLQQKISSPDQQ----CWLAKLLGYQFEVKYKPGQENKAADALSR 1005
F+ + W A L Y F+V++ G +N AD LSR
Sbjct: 628 SFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 673
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 197 bits (501), Expect = 2e-49
Identities = 167/646 (25%), Positives = 287/646 (43%), Gaps = 55/646 (8%)
Query: 404 VELLILIDSGASHNFISPKITSALGLVITPITTRSIKLGDGHKVVTRGICRGIKAKLGSI 463
+EL +D+GAS I+ K + +K+ DG + +C+ I +
Sbjct: 38 IELHCFVDTGASL-CIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGE 96
Query: 464 EITIDALVLELGGLDLVLGVSWLSTLGKVIM--DWKLLTMQFVYGEQVVQLQGMRGKDSY 521
I + + G+D ++G ++ I D + T Y + +L +
Sbjct: 97 IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHITKLTR-----AV 151
Query: 522 QSNLHSFLSDTHGREQMEWWGPQLQVVEATKKGHEIPQELRAVLADFHEVFTKKIQLPPV 581
+ + FL R + + Q + V + E P E A+L++ + +K+ +
Sbjct: 152 RVGIEGFLESMKKRSKTQ----QPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQ 207
Query: 582 RSRVHQ------------------------ITLNPEHGPINVRPYRYPHHQKEEIERQVT 617
R + + I L+ I V+P +Y +EE ++Q+
Sbjct: 208 RMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIK 267
Query: 618 ELLEAGIIRPSMSSFSSPVILV----KKKDKSWRMCVDYRALNKATIPDKYPIPIVDELL 673
ELL+ +I+PS S +P LV +K+ RM V+Y+A+NKATI D Y +P DELL
Sbjct: 268 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELL 327
Query: 674 DELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQAIM 733
+ G IFS D KSG+ Q+ + +E P T F GHYE+ V+PFGL AP+ FQ M
Sbjct: 328 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 387
Query: 734 NDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQID 793
++ FR + RKF V+ DDIL++S + +H H+ ++L + + ++ K + +I+
Sbjct: 388 DEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKIN 446
Query: 794 YLGHIISGAGVSVDPEKVQCIVEWPEP-KNVKGVRGFLGLTGYYRKFIKNYGKMAKPL-T 851
+LG I ++ I ++P+ ++ K ++ FLG+ Y +I ++ KPL
Sbjct: 447 FLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQA 506
Query: 852 ELTKKDNFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVL----- 906
+L + + W +E K+K + P L P ++ +E DA+ G +L
Sbjct: 507 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKI 566
Query: 907 ---MQQRQPIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLK 963
Y S + +KE +A++ I+ + YL F + TD+ K
Sbjct: 567 NEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFK 626
Query: 964 HFLQQKISSPDQQ----CWLAKLLGYQFEVKYKPGQENKAADALSR 1005
F+ + W A L Y F+V++ G +N AD LSR
Sbjct: 627 SFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 196 bits (497), Expect = 5e-49
Identities = 153/585 (26%), Positives = 267/585 (45%), Gaps = 21/585 (3%)
Query: 439 IKLGDGHKVVTRGICRGIKAKLGSIEITIDALVLELGGLDLVLGVSWLSTLGKVIMDWKL 498
+K+ + + +C+ +K K I + + G+D ++G ++ I W+
Sbjct: 81 VKIANQELIKITKVCKNLKVKFAGKSFEIPTVYQQETGIDFLIGNNFCRLYNPFIQ-WED 139
Query: 499 LTMQFVYGEQVVQLQGMRGKDSYQSNLHSFLSDTHGREQMEWWGPQLQVVEATKKGHEIP 558
+ E V+ + + + + EQ+ ++ ++ I
Sbjct: 140 RIAFHLKNEMVLIKKVTKAFSVSNPSFLENMKKDSKTEQIPGTNISKNIINPEERYFLIT 199
Query: 559 QELRAVLADFHEVFTKKIQLPPVRSRVHQ---ITLNPEHGPINVRPYRYPHHQKEEIERQ 615
++ + + +V ++ + P++S+ I L I V+P Y +E +Q
Sbjct: 200 EKYQKIEQLLDKVCSEN-PIDPIKSKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQ 258
Query: 616 VTELLEAGIIRPSMSSFSSPVILVKKKDK----SWRMCVDYRALNKATIPDKYPIPIVDE 671
+ ELL+ G+I PS S SP LV+ + + RM V+Y+A+N+ATI D + +P + E
Sbjct: 259 IKELLDLGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQE 318
Query: 672 LLDELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQA 731
LL L G IFS D KSG+ Q+ + EE T F GH+++ V+PFGL AP+ FQ
Sbjct: 319 LLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQR 378
Query: 732 IMNDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQ 791
M KF +V+ DDI+++S S L+H +H+ VL ++ + ++ K +
Sbjct: 379 HMQTALNG-ADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEK 437
Query: 792 IDYLGHIISGAGVSVDPEKVQCIVEWPEP-KNVKGVRGFLGLTGYYRKFIKNYGKMAKPL 850
I++LG I ++ I ++P+ ++ K ++ FLG+ Y +I ++ KPL
Sbjct: 438 INFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPL 497
Query: 851 TELTKKD-NFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVLMQQ 909
KKD + W + K+K + S P L LP + +E DA+ G VL +
Sbjct: 498 QVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKAR 557
Query: 910 RQP-----IAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLKH 964
Y S + +KEL+A+ I + YL FTV TD+K+ +
Sbjct: 558 ALDGVELICRYSSGSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTY 617
Query: 965 FLQQKISSPDQQ----CWLAKLLGYQFEVKYKPGQENKAADALSR 1005
FL+ + +Q W YQF+V++ G +N AD L+R
Sbjct: 618 FLRINLKGDSKQGRLVRWQNWFSKYQFDVEHLEGVKNVLADCLTR 662
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 196 bits (497), Expect = 5e-49
Identities = 166/646 (25%), Positives = 286/646 (43%), Gaps = 55/646 (8%)
Query: 404 VELLILIDSGASHNFISPKITSALGLVITPITTRSIKLGDGHKVVTRGICRGIKAKLGSI 463
+EL +D+GAS I+ K + +K+ DG + +C+ I +
Sbjct: 38 IELHCFVDTGASL-CIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGE 96
Query: 464 EITIDALVLELGGLDLVLGVSWLSTLGKVIM--DWKLLTMQFVYGEQVVQLQGMRGKDSY 521
I + + G+D ++G ++ I D + T Y + +L +
Sbjct: 97 IFRIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTR-----AV 151
Query: 522 QSNLHSFLSDTHGREQMEWWGPQLQVVEATKKGHEIPQELRAVLADFHEVFTKKIQLPPV 581
+ FL R + + Q + V + E P E A+L++ + +K+ +
Sbjct: 152 RVGTEGFLESMKKRSKTQ----QPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQ 207
Query: 582 RSRVHQ------------------------ITLNPEHGPINVRPYRYPHHQKEEIERQVT 617
R + + I L+ I V+P +Y +EE ++Q+
Sbjct: 208 RMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIK 267
Query: 618 ELLEAGIIRPSMSSFSSPVILV----KKKDKSWRMCVDYRALNKATIPDKYPIPIVDELL 673
ELL+ +I+PS S +P LV +K+ RM V+Y+A+NKAT+ D Y +P DELL
Sbjct: 268 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELL 327
Query: 674 DELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQAIM 733
+ G IFS D KSG+ Q+ + +E P T F GHYE+ V+PFGL AP+ FQ M
Sbjct: 328 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 387
Query: 734 NDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQID 793
++ FR + RKF V+ DDIL++S + +H H+ ++L + + ++ K + +I+
Sbjct: 388 DEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKIN 446
Query: 794 YLGHIISGAGVSVDPEKVQCIVEWPEP-KNVKGVRGFLGLTGYYRKFIKNYGKMAKPL-T 851
+LG I ++ I ++P+ ++ K ++ FLG+ Y +I ++ KPL
Sbjct: 447 FLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQA 506
Query: 852 ELTKKDNFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVL----- 906
+L + + W +E K+K + P L P ++ +E DA+ G +L
Sbjct: 507 KLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKI 566
Query: 907 ---MQQRQPIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLK 963
Y S + +KE +A++ I+ + YL F + TD+ K
Sbjct: 567 NEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFK 626
Query: 964 HFLQQKISSPDQQ----CWLAKLLGYQFEVKYKPGQENKAADALSR 1005
F+ + W A L Y F+V++ G +N AD LSR
Sbjct: 627 SFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 194 bits (493), Expect = 2e-48
Identities = 165/642 (25%), Positives = 285/642 (43%), Gaps = 47/642 (7%)
Query: 404 VELLILIDSGASHNFISPKITSALGLVITPITTRSIKLGDGHKVVTRGICRGIKAKLGSI 463
+EL +D+GAS I+ K + +K+ DG + +C+ I +
Sbjct: 38 IELHCFVDTGASL-CIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIARE 96
Query: 464 EITIDALVLELGGLDLVLGVSWLSTLGKVIM--DWKLLTMQFVYGEQVVQLQGMRGKDSY 521
I + + G+D ++G ++ I D + T Y + +L +
Sbjct: 97 IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTR-----AV 151
Query: 522 QSNLHSFLSDTHGREQMEWWGP----------QLQVVEATKKGHEIPQELRAV------- 564
+ FL R + + P L+ + +G + +E +
Sbjct: 152 RVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLKEIAILSEGRRLSEEKLFITQQRMQK 211
Query: 565 LADFHEVFTKKIQLPPVRSRVHQ---ITLNPEHGPINVRPYRYPHHQKEEIERQVTELLE 621
+ + E + L P +++ I L+ I V+P +Y +EE ++Q+ ELL+
Sbjct: 212 IEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLD 271
Query: 622 AGIIRPSMSSFSSPVILV----KKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELN 677
+I+PS S +P LV +K+ RM V+Y+A+NKATI D Y +P DELL +
Sbjct: 272 LKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIR 331
Query: 678 GAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLMNAPATFQAIMNDIF 737
G IFS D KSG+ Q+ + +E P T F GHYE+ V+PFGL AP+ FQ M++ F
Sbjct: 332 GKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF 391
Query: 738 RPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQIDYLGH 797
R + RKF V+ DDIL++S + +H H+ ++L + + ++ K + +I++LG
Sbjct: 392 RVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGL 450
Query: 798 IISGAGVSVDPEKVQCIVEWPEP-KNVKGVRGFLGLTGYYRKFIKNYGKMAKPL-TELTK 855
I ++ I ++P+ ++ K ++ FLG+ Y +I ++ KPL +L +
Sbjct: 451 EIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKE 510
Query: 856 KDNFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVL--------M 907
+ W +E K+K + P L P ++ +E DA+ G +L
Sbjct: 511 NVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGT 570
Query: 908 QQRQPIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLKHFLQ 967
Y S + +KE +A++ I+ + YL F + TD+ K F+
Sbjct: 571 NTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVN 630
Query: 968 QKISSPDQQ----CWLAKLLGYQFEVKYKPGQENKAADALSR 1005
+ W A L Y F+V++ G +N AD LSR
Sbjct: 631 LNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 192 bits (489), Expect = 5e-48
Identities = 139/473 (29%), Positives = 238/473 (49%), Gaps = 42/473 (8%)
Query: 609 KEEIERQVTELLEAGIIRPSMSSFSSPVILV-----------KKKDKSWRMCVDYRALNK 657
+E + RQ+ LL+ +IRPS S S +V K+K RM +Y+ LN+
Sbjct: 1415 EEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNE 1474
Query: 658 ATIPDKYPIPIVDELLDELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLV 717
T D+Y +P ++ ++ ++ + I+SK DLKSG+ Q+ + EE +P T F N YE+LV
Sbjct: 1475 NTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLV 1534
Query: 718 MPFGLMNAPATFQAIMNDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNS 777
MPFGL NAPA FQ M+++F+ KF+ V+ DDIL++S++ +H HL +L + N
Sbjct: 1535 MPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENG 1593
Query: 778 FVANQSKCKFGCAQIDYLGHIISGAGVSVDPEKVQCIVEWPEPK--NVKGVRGFLGLTGY 835
+ + +K K G +ID+LG + + + P + I ++ + K +G+R +LG+ Y
Sbjct: 1594 LILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSY 1653
Query: 836 YRKFIKNYGKMAKPLTE-LTKKDNFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVE 894
R +I++ GK+ +PL + + + E + ++K + + P L LP D +E
Sbjct: 1654 ARNYIQDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSFIIIE 1713
Query: 895 CDAAGRGIGAVL---MQQRQPIA---YFSKALSNGNLTKSVYEKELMALVLCIQHWR-HY 947
D G GAV M + P + + A + N KS + E+ A + + ++ +Y
Sbjct: 1714 TDGCMTGWGAVCKWKMSKHDPRSTERICAYASGSFNPIKSTIDAEIQAAIHGLDKFKIYY 1773
Query: 948 LLGKAFTVYTDHKS-LKHFLQQKISSPDQQCWLA-----KLLGYQFEVKYKPGQENKAAD 1001
L K + +D ++ +K + + + P + WL LG ++ G+ N AD
Sbjct: 1774 LDKKELIIRSDCEAIIKFYNKTNENKPSRVRWLTFSDFLTGLGITVTFEHIDGKHNGLAD 1833
Query: 1002 ALSR-------RGDESDFFSLVSFPLWDDRKKLLEEIASDPYIKNLLQDVQQD 1047
ALSR + DES + S +D K + +D + +NL+ V D
Sbjct: 1834 ALSRMINFIVEKNDESPYRFTSSV---EDALK----VCNDDHGRNLISAVIND 1879
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 190 bits (483), Expect = 2e-47
Identities = 172/651 (26%), Positives = 287/651 (43%), Gaps = 60/651 (9%)
Query: 395 MKLAGQVANVELLILIDSGASHNFISPKITSALGLVITPITTRSIKLGDGHKVVTRGICR 454
+K G N++L +D+G+S S K T +IK+ +G + +C
Sbjct: 18 LKFPGYQTNLDLHCYVDTGSSLCMAS-KYVIPEEYWQTAEKPLNIKIANGKIIQLTKVCS 76
Query: 455 GIKAKLGSIEITIDALVLELGGLDLVLGVSWLST--------------LGKVIMDWKLLT 500
+ +LG I L + G+DL+LG ++ L K + +T
Sbjct: 77 KLPIRLGGERFLIPTLFQQESGIDLLLGNNFCQLYSPFIQYTDRIYFHLNKQSVIIGKIT 136
Query: 501 MQFVYGEQVVQLQGMRGKDSYQ--------SNLHSFLSD--THGREQMEWWGPQLQVVEA 550
+ YG + L+ M+ K SN H FL + H E +
Sbjct: 137 KAYQYGVKGF-LESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDEML------------ 183
Query: 551 TKKGHEIPQELRAVLADFHEVFTKKIQLPPVRSR---VHQITLNPEHGPINVRPYRYPHH 607
+EI + + + E + + + P +S+ I L + V+P Y
Sbjct: 184 ----YEIQISKFSAIEEMLERVSSENPIDPEKSKQWMTATIELIDPKTVVKVKPMSYSPS 239
Query: 608 QKEEIERQVTELLEAGIIRPSMSSFSSPVILVKKKDK----SWRMCVDYRALNKATIPDK 663
+EE +RQ+ ELLE +I+PS S+ SP LV+ + + RM V+Y+A+NKAT D
Sbjct: 240 DREEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDA 299
Query: 664 YPIPIVDELLDELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLVMPFGLM 723
+ +P DELL + G I+S D KSG Q+ + +E T F GHY++ V+PFGL
Sbjct: 300 HNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLK 359
Query: 724 NAPATFQAIMNDIFRPYLRKFVLVFFDDILIYSKS-LLEHRDHLKLVLTVLLSNSFVANQ 782
AP+ F + K+ V+ DDIL++S + EH H+ +L + ++
Sbjct: 360 QAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSK 419
Query: 783 SKCKFGCAQIDYLGHIISGAGVSVDPEKVQCIVEWPEP-KNVKGVRGFLGLTGYYRKFIK 841
K + +I++LG I ++ I ++P+ ++ K ++ FLG+ Y +I
Sbjct: 420 KKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTYASDYIP 479
Query: 842 NYGKMAKPLTELTKKDN-FTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGR 900
+ KPL K+D+ +TW + Q K+K + S P L P+ + +E DA+
Sbjct: 480 KLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEE 539
Query: 901 GIGAVLMQQRQPIAYFSKALSNG-NLTKSVY---EKELMALVLCIQHWRHYLLGKAFTVY 956
G +L Y + S + Y EKEL+A++ I+ + YL F +
Sbjct: 540 FWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIR 599
Query: 957 TDHKSLKHFLQQKISSPDQQ----CWLAKLLGYQFEVKYKPGQENKAADAL 1003
TD+K+ HF+ + +Q W L Y F+V++ G +N AD L
Sbjct: 600 TDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFL 650
>M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860
(ORF158)
Length = 158
Score = 150 bits (378), Expect = 3e-35
Identities = 74/130 (56%), Positives = 91/130 (69%), Gaps = 2/130 (1%)
Query: 764 DHLKLVLTVLLSNSFVANQSKCKFGCAQIDYLGH--IISGAGVSVDPEKVQCIVEWPEPK 821
+HL +VL + + F AN+ KC FG QI YLGH IISG GVS DP K++ +V WPEPK
Sbjct: 2 NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPK 61
Query: 822 NVKGVRGFLGLTGYYRKFIKNYGKMAKPLTELTKKDNFTWGEEAKQAFHKLKTVMTSSPV 881
N +RGFLGLTGYYR+F+KNYGK+ +PLTEL KK++ W E A AF LK +T+ PV
Sbjct: 62 NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPV 121
Query: 882 LALPDFDKSF 891
LALPD F
Sbjct: 122 LALPDLKLPF 131
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 149 bits (375), Expect = 8e-35
Identities = 122/429 (28%), Positives = 205/429 (47%), Gaps = 28/429 (6%)
Query: 604 YPHHQKEEIERQVTELLEAGIIR---PSMSSFSSPVILVKKKDK---SWRMCVDYRALNK 657
Y KE E+Q+ ELL+ +I+ P+ ++ I+ ++ R+ +Y+ LN
Sbjct: 1191 YTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLND 1250
Query: 658 ATIPDKYPIPIVDELLDELNGAVIFSKIDLKSGYHQIRVHEEDIPKTTFRTHNGHYEYLV 717
D + IP +++ + A IFSK DLK+G+H +++ ++ TTF G Y + V
Sbjct: 1251 NMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNV 1310
Query: 718 MPFGLMNAPATFQAIMNDIFRPYLRKFVLVFFDDILIYSKSLLEHRDHLKLVLTVLLSNS 777
PFG+ NAP FQ M + F KF L++ DDILI S + EH +HLK+ +
Sbjct: 1311 CPFGIANAPCAFQRFMQESFGDL--KFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVG 1368
Query: 778 FVANQSKCKFGCAQIDYLGHIISGAGVSVDPEKVQCIVEWPEPK--NVKGVRGFLGLTGY 835
V ++ K K +++YLG I +S+ P V I ++ + K +KG++ +LGL Y
Sbjct: 1369 CVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNY 1428
Query: 836 YRKFIKNYGKMAKPLTELT-KKDNFTWGEEAKQAFHKLKTVMTSSPVLALPDFDKSFEVE 894
R +IK+ K+ PL + T K + +E K++ ++ L P +E
Sbjct: 1429 ARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYIIIE 1488
Query: 895 CDAAGRGIGAVLM--------QQRQPIAYFSKALSNGNLTKSVYEKELMALVLCIQHWRH 946
DA+ G GAVL+ + + IA ++ T + + E+ A+ + ++
Sbjct: 1489 TDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKTWTSLDYEIEAINEALNKFQI 1548
Query: 947 YLLGKAFTVYTDHKSL-KHFLQQKISSPDQQCWLAKLLGYQFEVKYKP------GQENKA 999
Y L K FT+ TD +++ K + + W+ KL + YKP G +N
Sbjct: 1549 Y-LDKDFTIRTDCEAIVKGIKTEDYKKRSKTRWI-KLRDNLLKDGYKPTFEHIKGNKNFL 1606
Query: 1000 ADALSRRGD 1008
+ LSR GD
Sbjct: 1607 PNFLSREGD 1615
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 143 bits (360), Expect = 4e-33
Identities = 120/428 (28%), Positives = 202/428 (47%), Gaps = 28/428 (6%)
Query: 577 QLPPVRSRVHQITLNPEHGPINVRPYRYPHHQKEEIERQVTELLEAGIIRPSMSSFSSPV 636
Q+PPV + L P+ VR Y +E I + + L+ G++ P S +++P+
Sbjct: 161 QVPPV-----VVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLVPCRSPWNTPL 215
Query: 637 ILVKKKDKS-WRMCVDYRALNKATIPDKYP-IPIVDELLDELNGAVI-FSKIDLKSGYHQ 693
+ VKK + +R D R +NK + D +P +P LL L + +S +DLK +
Sbjct: 216 LPVKKPGTNDYRPVQDLREINKR-VQDIHPTVPNPYNLLSSLPPSYTWYSVLDLKDAFFC 274
Query: 694 IRVHEEDIPKTTF------RTHNGHYEYLVMPFGLMNAPATF-QAIMNDI--FRPYLRKF 744
+R+H P F + + G + +P G N+P F +A+ D+ FR +
Sbjct: 275 LRLHPNSQPLFAFEWKDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQV 334
Query: 745 VLV-FFDDILIYSKSLLEHRDHLKLVLTVLLSNSFVANQSKCKFGCAQIDYLGHIISGAG 803
VL+ + DD+L+ + + + + + +L L + + K + ++ YLG+++
Sbjct: 335 VLLQYVDDLLVAAPTYEDCKKGTQKLLQELSKLGYRVSAKKAQLCQREVTYLGYLLKEGK 394
Query: 804 VSVDPEKVQCIVEWPEPKNVKGVRGFLGLTGYYRKFIKNYGKMAKPLTELTKKD-NFTWG 862
+ P + +++ P P + VR FLG G+ R +I + +A PL LTK+ F W
Sbjct: 395 RWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESIPFIWT 454
Query: 863 EEAKQAFHKLKTVMTSSPVLALPDFDKSFEVECDAAGRGIGAVLMQQ----RQPIAYFSK 918
EE +QAF +K + S+P LALPD K F + D VL Q R+P+AY SK
Sbjct: 455 EEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSK 514
Query: 919 ALSNGNLTKSVYEKELMALVLCIQHWRHYLLGKAFTVYTDHKSLKHFLQQKISSPDQQCW 978
L K + A+ L ++ LG+ TV H SL+ ++Q PD+
Sbjct: 515 KLDPVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASH-SLESIVRQ---PPDRWMT 570
Query: 979 LAKLLGYQ 986
A++ YQ
Sbjct: 571 NARMTHYQ 578
Score = 68.6 bits (166), Expect = 1e-10
Identities = 68/237 (28%), Positives = 98/237 (40%), Gaps = 18/237 (7%)
Query: 1104 SLYWVGMQRTVRDFVRACDTC-QRQKYSAMSPGGLLQPFPVPNAVWEDLSLDFIIGLPKS 1162
SL +Q VR+ C C + G Q P WE +DF P
Sbjct: 835 SLLIPNLQSAVREVTSQCQACAMTNAVTTYRETGKRQRGDRPGVYWE---VDFTEIKPGR 891
Query: 1163 KGYEAILVVVDRLSKYSHFILLKHPYTAKSIAEVFVREIVRLHGIPNTVKSDRDPIFVSH 1222
G + +LV +D S + K TA + + + EI+ GIP + SD P FV+
Sbjct: 892 YGNKYLLVFIDTFSGWVEAFPTKTE-TALIVCKKILEEILPRFGIPKVLGSDNGPAFVAQ 950
Query: 1223 FWSELFKLQGTKLKMSSSYHPETDGQTEVINRCLESYLRCFASD-HPKTWSFWVPWAEFW 1281
L G K+ +Y P++ GQ E +NR ++ L A + K W +P A
Sbjct: 951 VSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLR 1010
Query: 1282 YNSTFHCSIGQTPFEVVYGRKAPPIIRFLTNETKVVAVALELSERDEALKQLRTHLQ 1338
+T G TP+E++YG PPI+ + ET L D L L THL+
Sbjct: 1011 ARNT-PGRFGLTPYEILYG-GPPPILE--SGET--------LGPDDRFLPVLFTHLK 1055
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,456,462
Number of Sequences: 164201
Number of extensions: 8083792
Number of successful extensions: 19294
Number of sequences better than 10.0: 138
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 18845
Number of HSP's gapped (non-prelim): 258
length of query: 1543
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1420
effective length of database: 39,777,331
effective search space: 56483810020
effective search space used: 56483810020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0265.11