BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0262.8
         (312 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

VGNB_CPMV (P03600) Genome polyprotein B [Contains: Protease cofa...    31  3.5
WEB1_YEAST (P38968) WEB1 protein (Protein transport protein SEC31)     30  5.9
E4L3_MOUSE (Q9WV92) Band 4.1-like protein 3 (4.1B) (Differential...    30  7.7
E4L3_HUMAN (Q9Y2J2) Band 4.1-like protein 3 (4.1B) (Differential...    30  7.7

>VGNB_CPMV (P03600) Genome polyprotein B [Contains: Protease
           cofactor; Membrane-binding protein; Viral genome-linked
           protein (VPg); Protease (EC 3.4.22.-); RNA-directed RNA
           polymerase (EC 2.7.7.48)]
          Length = 1866

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 82  LILVGKVTLPLMSWLLVISTCVSPLSGLGGRVLHMMLRFLWR 123
           L+ VGK    + +    ISTC   L  L GR+L M+  F+W+
Sbjct: 348 LVSVGKTCTAVNA----ISTCCGNLKALAGRILGMLRDFIWK 385


>WEB1_YEAST (P38968) WEB1 protein (Protein transport protein SEC31)
          Length = 1273

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 19/43 (44%), Positives = 21/43 (48%)

Query: 259 NDRSDEEFDANYENEDGGGENEAGPSTVTWEEPDFQSSLQMEQ 301
           ND SD + DAN E ED G E      T    E DF  S  +EQ
Sbjct: 470 NDESDAQDDANNEKEDDGEEFFQQIETNFQPEGDFSLSGNIEQ 512


>E4L3_MOUSE (Q9WV92) Band 4.1-like protein 3 (4.1B) (Differentially
           expressed in adenocarcinoma of the lung protein 1)
           (DAL-1) (DAL1P) (mDAL-1)
          Length = 929

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (67%)

Query: 115 HMMLRFLWRLCVDHHCIFPILL 136
           H   + LW++CV+HH  F +LL
Sbjct: 378 HRAAKRLWKVCVEHHTFFRLLL 399


>E4L3_HUMAN (Q9Y2J2) Band 4.1-like protein 3 (4.1B) (Differentially
           expressed in adenocarcinoma of the lung protein 1)
           (DAL-1)
          Length = 1087

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (67%)

Query: 115 HMMLRFLWRLCVDHHCIFPILL 136
           H   + LW++CV+HH  F +LL
Sbjct: 370 HRAAKRLWKVCVEHHTFFRLLL 391


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.342    0.152    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,599,779
Number of Sequences: 164201
Number of extensions: 1400274
Number of successful extensions: 4075
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4072
Number of HSP's gapped (non-prelim): 4
length of query: 312
length of database: 59,974,054
effective HSP length: 110
effective length of query: 202
effective length of database: 41,911,944
effective search space: 8466212688
effective search space used: 8466212688
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 66 (30.0 bits)