BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0262.4
         (180 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

FLO1_CAEEL (Q17766) Folate-like transporter 1                          31  1.8
DPO1_LACLA (Q9CDS1) DNA polymerase I (EC 2.7.7.7) (POL I)              31  1.8
YNH6_CAEEL (P32744) Hypothetical protein R107.6 in chromosome III      30  3.9
PEX6_YEAST (P33760) Peroxisomal biogenesis factor 6 (Peroxin-6) ...    30  3.9
DYHC_ANTCR (P39057) Dynein beta chain, ciliary                         30  3.9
DY1B_CHLRE (Q9MBF8) Dynein 1-beta heavy chain, flagellar inner a...    29  6.7
CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi...    28  8.8

>FLO1_CAEEL (Q17766) Folate-like transporter 1
          Length = 360

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/45 (37%), Positives = 28/45 (61%), Gaps = 5/45 (11%)

Query: 69  MAWFTTLPL----GSIVKFRDFSSKFLIQFSASKIKQVTIDDLYN 109
           M+W TT  +    G++ +FR  ++ FL  F AS  K +T+D+LY+
Sbjct: 1   MSWRTTTAILCLYGAVKEFRP-ATPFLTPFLASPEKNITLDELYS 44


>DPO1_LACLA (Q9CDS1) DNA polymerase I (EC 2.7.7.7) (POL I)
          Length = 877

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 77  LGSIVKFRDFSSKFLIQFSASKIKQVTIDDLYNVRQLERETLKQYVKRYSAASVKIEE 134
           L   +  RDF SK L+Q     I  V +++L  ++ L ++T+++ ++   A  +K++E
Sbjct: 812 LDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKVLVKQTMEEAIE--LAVPLKVDE 867


>YNH6_CAEEL (P32744) Hypothetical protein R107.6 in chromosome III
          Length = 1063

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 43  SMKMVISAASDAVKCRMFPSMFKGTAMAWFTTLPLGSIVKFRD---FSSKFLIQFSASKI 99
           S K  +  ASDA       +  +GTA  + + L  GSI   R+    SSKFL Q SAS I
Sbjct: 294 SSKQKMLRASDAASSSTSINSERGTA-PFRSKLSAGSIGGIRNAPNISSKFLAQRSASAI 352

Query: 100 --KQVT-----IDDLYNVRQLERETLKQ 120
             KQVT     +    N+R +   TL +
Sbjct: 353 DTKQVTRMATSVSRTPNIRPMTTRTLSK 380


>PEX6_YEAST (P33760) Peroxisomal biogenesis factor 6 (Peroxin-6)
           (Peroxisome biosynthesis protein PAS8)
          Length = 1030

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 19/111 (17%)

Query: 15  VAIPDNMKSLALEAYSGGTDPKDHLLYFSMKMVISAASDAVKCRMFPSMFKGTAMAWFTT 74
           V+  DN+   +L +YS G  P D      +K ++  A      R +    K     W   
Sbjct: 647 VSYMDNISFSSLSSYSAGLTPLD------IKSIVETARMTATARFYQESKK---CGW--- 694

Query: 75  LPLGSIVKFRDFS-------SKFLIQFSASKIKQVTIDDLYNVRQLERETL 118
           LP   ++   D S       ++F +   A +I  VT DD+  +  ++ E L
Sbjct: 695 LPQSILITQEDLSKATSKARNEFSVSIGAPQIPNVTWDDIGGIDFVKGEIL 745


>DYHC_ANTCR (P39057) Dynein beta chain, ciliary
          Length = 4466

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 55   VKCRMFPSMFKGTAMAWFTTLPLGSIVKFRDFSSKFL--IQFSASKIKQVTIDDLYNVRQ 112
            V+ R FP++   T++ WF   P  ++V     S +FL  ++     IK    + +  V  
Sbjct: 2944 VRSRKFPAVVNCTSIDWFHEWPQEALV---SVSKRFLDEVELLKGDIKNSIAEFMAYVHV 3000

Query: 113  LERETLKQYV---KRYSAASVK--IEELEP*ACARAFKDGLLPGKLNNKLSRKLARSMTE 167
               E+ KQY+   +RY+  + K  +E+++      A K   L  K+      +L   +T+
Sbjct: 3001 SVNESSKQYLTNERRYNYTTPKSFLEQIKLYESLLAMKSKELTAKM-----ERLENGLTK 3055

Query: 168  VRAQA 172
            +++ A
Sbjct: 3056 LQSTA 3060


>DY1B_CHLRE (Q9MBF8) Dynein 1-beta heavy chain, flagellar inner arm I1
            complex (1-beta DHC) (Dynein 1, subspecies f)
          Length = 4513

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 56   KCRMFPSMFKGTAMAWFTTLPLGSI 80
            +CRMFP +   T + WFT  P  ++
Sbjct: 2988 RCRMFPGLVNCTTIDWFTEWPADAL 3012


>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2
            homolog (dMi-2)
          Length = 1982

 Score = 28.5 bits (62), Expect = 8.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 49   SAASDAVKCRMFPSMFKGTAMAWFTTLPLGSIVKFR 84
            +A++ A     FP+ F+GT +  FT+ P G+   FR
Sbjct: 1932 NASNAAQLMAQFPAGFQGTTLPAFTSGPAGNFANFR 1967


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,076,761
Number of Sequences: 164201
Number of extensions: 621862
Number of successful extensions: 2035
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2031
Number of HSP's gapped (non-prelim): 8
length of query: 180
length of database: 59,974,054
effective HSP length: 103
effective length of query: 77
effective length of database: 43,061,351
effective search space: 3315724027
effective search space used: 3315724027
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)