BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0262.11
(581 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III) (p... 45 5e-04
PR4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog... 44 0.002
RSP5_CAEEL (Q10021) RNA-binding protein rsp-5 (CeSC35-2) 40 0.022
PR4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog... 38 0.064
SON_MOUSE (Q9QX47) SON protein 38 0.083
DEK_HUMAN (P35659) DEK protein 37 0.19
YL17_CAEEL (Q11102) Hypothetical protein C02F12.7 in chromosome X 36 0.32
YLF3_CAEEL (Q03573) Hypothetical protein C40H1.3 in chromosome III 35 0.41
SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory eleme... 35 0.41
RNP4_HUMAN (Q86U06) RNA-binding region containing protein 4 (Spl... 35 0.54
BAP1_MOUSE (Q6RHR9) BAI1-associated protein 1 (BAP-1) (Membrane ... 35 0.54
IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2 35 0.70
BAP1_HUMAN (Q96QZ7) BAI1-associated protein 1 (BAP-1) (Membrane ... 34 1.2
TFE3_HUMAN (P19532) Transcription factor E3 33 2.0
SFR5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre... 33 2.0
RLX3_STAAU (P14491) RLX protein 33 2.0
BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui 33 2.0
RNB_HHV11 (P04487) RNA-binding protein (Vmw21) 33 2.7
PPIG_HUMAN (Q13427) Peptidyl-prolyl cis-trans isomerase G (EC 5.... 33 2.7
CIW4_HUMAN (Q9NYG8) Potassium channel subfamily K member 4 (TWIK... 33 2.7
>RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III)
(p241)
Length = 1374
Score = 45.1 bits (105), Expect = 5e-04
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 31/96 (32%)
Query: 334 PLPRSPTSRRSP------------------------TPPRQRARTPPRHRTDDRYCRAPQ 369
PLP++P+ RRSP R+R R+P R R D RY
Sbjct: 211 PLPKAPSERRSPERLKHYDDHRHRDHSHGRGERHRSLDRRERGRSPDRRRQDSRYRSDYD 270
Query: 370 NGRSPDRRRSFDRGRIPDRHGRDEVIRH-HRMNQIS 404
GR+P R RS++R R +R RH HR N+ S
Sbjct: 271 RGRTPSRHRSYERSRERERE------RHRHRDNRRS 300
>PR4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog
(EC 2.7.1.37) (PRP4 pre-mRNA processing factor 4
homolog) (PRP4 kinase)
Length = 1007
Score = 43.5 bits (101), Expect = 0.002
Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 18/243 (7%)
Query: 185 GKKAKTVEEFQARSEKYINMEDAAALRASNQADQQKAPEWAKDPG-DTTRIRESRRKNQD 243
GKK+++ + + +S+ + + R S +++ K + K P D + +E+R ++
Sbjct: 289 GKKSRSPVDLRGKSK---DRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRR 345
Query: 244 EKKPKRKRYENYAPLN----SLSQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFHDSP 299
+ ++R + P + S S +L +R S + P L+ G + S+ P
Sbjct: 346 PGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKS-PSRTLSPGRRAKSRSLERKRREP 404
Query: 300 DNNTDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPR-SPTSRRSPTPPRQRARTP-PR 357
+ + + L R R S P+ R SPT RRS +P R+R+R+P R
Sbjct: 405 ERRRLSSPRTRPRDDILSRRER-------SKDASPINRWSPTRRRSRSPIRRRSRSPLRR 457
Query: 358 HRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQISVGSIAGGFAAGGH 417
R+ R R+P+ R RS R R R GR R GS++ G
Sbjct: 458 SRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSEGMKVEQE 517
Query: 418 TSN 420
+S+
Sbjct: 518 SSS 520
>RSP5_CAEEL (Q10021) RNA-binding protein rsp-5 (CeSC35-2)
Length = 208
Score = 39.7 bits (91), Expect = 0.022
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 292 FCEFHDSPDNNTDECLNLKDKVK*LIRAGRLSKYVALSYG-----DLPLPRSPTSRRSPT 346
F +F DS D D C +L K + + V ++ G D RSP RR
Sbjct: 39 FVDFEDSRDAE-DACHDLDGKT---MEGSSMRLVVEMARGKPRGNDRHGSRSP--RRRSR 92
Query: 347 PPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGR 391
PR+R+RTPPR R+ R + + RS RS R R P R R
Sbjct: 93 SPRRRSRTPPRRRSRSRDRKRSRRSRS----RSSSRSRSPVRESR 133
Score = 32.7 bits (73), Expect = 2.7
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 335 LPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEV 394
L R + RSP P + R+RT R P+NG DR+RS RGR R G +
Sbjct: 147 LKREASRSRSPLPAKDRSRT--------RSGSPPKNG--GDRKRSVSRGRSHSRDGSNRS 196
Query: 395 I 395
+
Sbjct: 197 V 197
>PR4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog
(EC 2.7.1.37) (PRP4 pre-mRNA processing factor 4
homolog) (Pre-mRNA protein kinase)
Length = 1007
Score = 38.1 bits (87), Expect = 0.064
Identities = 66/273 (24%), Positives = 107/273 (39%), Gaps = 46/273 (16%)
Query: 187 KAKTVEEFQARSEKYINMEDAAAL-----RASNQADQQKAPEWAKDPGDTTRIRESRRKN 241
KA++ E + +SE+ ++D R+ +++ + K+P +D R R RK+
Sbjct: 255 KARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRRSRSKERKS 314
Query: 242 QDEKKPKRKR------------YENYAPLN---------SLSQILRERA----STDLRDR 276
+ + K K+ EN +P SLS LR+++ S L DR
Sbjct: 315 KRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRSRSPLLNDR 374
Query: 277 -------PPPMLTKGDKLDSKRFCEFHDSPDNNTDECLNLKDKVK*LIRAGRLSKYVALS 329
P L+ G + S+ P+ + + L R R S
Sbjct: 375 RSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDILGRCER-------S 427
Query: 330 YGDLPLPR-SPTSRRSPTPPRQRARTP-PRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPD 387
P+ R SPT RRS +P R+R+R+P R R+ R R+P+ R +S R R
Sbjct: 428 KDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRSRRSKSRLRRRSRS 487
Query: 388 RHGRDEVIRHHRMNQISVGSIAGGFAAGGHTSN 420
R G R GS++ G +S+
Sbjct: 488 RGGHRRRSRSKVKEDKFKGSLSEGMKVEQESSS 520
Score = 33.5 bits (75), Expect = 1.6
Identities = 44/218 (20%), Positives = 87/218 (39%), Gaps = 7/218 (3%)
Query: 187 KAKTVEEFQARSEKYINMEDAAALRASNQADQQKAPEWAKDPGDTTRIRESRRKNQDEKK 246
K+++ E + RS+K + LR + K +K P ++ ++ RK++
Sbjct: 186 KSRSKERTRHRSDKRKSKGAGEMLREKANRSKSKERRKSKSPSKRSKSQDQARKSKSPPL 245
Query: 247 PKRKRYENYAPLNSLSQILRERASTDLRDR-PPPMLTKGDKLDSKRFCEFHDSPDNNTDE 305
+R + + + + ++ ++DR P++ + + SK+ D D + D
Sbjct: 246 RRRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDR 305
Query: 306 CLNLKDKVK*LIRAGRLSKYVALSYGDLPL---PRSPTSRRSPTPPRQRARTPPRHRTDD 362
K++ + K + D RSP SRR P++R+ + P+ R
Sbjct: 306 RSRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSP-SRRPGRSPKRRSLS-PKLRDKS 363
Query: 363 RYCRAP-QNGRSPDRRRSFDRGRIPDRHGRDEVIRHHR 399
R R+P N R + +S R P R + + R
Sbjct: 364 RRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKR 401
>SON_MOUSE (Q9QX47) SON protein
Length = 2404
Score = 37.7 bits (86), Expect = 0.083
Identities = 56/225 (24%), Positives = 88/225 (38%), Gaps = 19/225 (8%)
Query: 186 KKAKTVEEFQARSEKYINMEDAAALRASNQADQ-QKAPEWAKDPGDTTRIRE-SRRKNQD 243
K+ K ++RS++ + E + R S + +K +K TR R SRR+ +
Sbjct: 1799 KEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRS 1858
Query: 244 EKKPKRKRYENYAPLNSLSQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFHDSPDNNT 303
+ + R + + R+ + R R + D+++ +
Sbjct: 1859 SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRK-----RSSSRDNRKAARARSRTPSRR 1913
Query: 304 DECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSPT-SRRSPTPPRQRARTPPRH-RTD 361
+ + + I GR S+ P RS T SRRS TP R R+RTP R RT
Sbjct: 1914 SRS-HTPSRRRRSISVGRRR-----SFSISPSRRSRTPSRRSRTPSR-RSRTPSRRSRTP 1966
Query: 362 DRYCRAP---QNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQI 403
R R P + RS RRRSF + R R + R + I
Sbjct: 1967 SRRSRTPSRRRRSRSAVRRRSFSISPVRLRRSRTPLRRRFSRSPI 2011
>DEK_HUMAN (P35659) DEK protein
Length = 375
Score = 36.6 bits (83), Expect = 0.19
Identities = 52/218 (23%), Positives = 84/218 (37%), Gaps = 37/218 (16%)
Query: 130 RGNVGFK*ASPKESLKTFLNRFNK---EAGDIHYLLPQVRLV--LVR*ALHPGPF----- 179
+G+V +K +E LK F N K E D+ LV ++ +HP P
Sbjct: 137 KGSVQYK--KKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPKPSGKPLP 194
Query: 180 ---LTSLDGKKAKTVEEFQARSEKYINMEDAAALRASNQADQQKAPEWAKDPGDTTRIRE 236
T G K + AR K + + +S+ D++K E + D D E
Sbjct: 195 KSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNKEESSDDEDKESEEE 254
Query: 237 SRRKNQDEKKPKRKRYENYAPLNSLSQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFH 296
+K +KPK+K + + + +ST TK ++ SK+ E
Sbjct: 255 PPKKTAKREKPKQKATSKSKKSVKSANVKKADSST----------TKKNQNSSKKESESE 304
Query: 297 DSPDNN----------TDECLNLKDKVK*LIRAGRLSK 324
DS D+ TDE LK+ +K L+ + L +
Sbjct: 305 DSSDDEPLIKKLKKPPTDE--ELKETIKKLLASANLEE 340
>YL17_CAEEL (Q11102) Hypothetical protein C02F12.7 in chromosome X
Length = 1130
Score = 35.8 bits (81), Expect = 0.32
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 184 DGKKAKTVEEFQARSEKYINMEDAAALRASNQADQQKAPEWAKDPGDTTRIRE----SRR 239
+ + +T +E + ++EK + AA A+ + ++K+P AK P TR+R+ +
Sbjct: 1019 EASEKRTRKEAEKKAEKEKEKAEKAAKEAAKELAREKSPARAKSPSILTRLRDRSPAKSK 1078
Query: 240 KNQDEKKPKRKRYENYAPLNSLSQILRERASTDLRDRPPPMLTKGDKLDSKR 291
+ E P +P ++ ++ R S L R TK D KR
Sbjct: 1079 SDNLESTPSSSSRNLLSPFDAEKRMERSSPSQQLFSR-----TKKDSSSEKR 1125
>YLF3_CAEEL (Q03573) Hypothetical protein C40H1.3 in chromosome III
Length = 504
Score = 35.4 bits (80), Expect = 0.41
Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 11/218 (5%)
Query: 177 GPFLTSLDGKKAKTVEEFQARSEKYINMEDAAALRASNQADQQKAPEWAKDPGDTTR-IR 235
G +S +G + K +++ + + +K I Q +++ + DP + R +R
Sbjct: 24 GSRASSRNGGRFKPIDKEKEKEKKEIGDYGLPKNEYKMQGYDERSSDVGADPLASVRTLR 83
Query: 236 ESRRKNQDEKKPKRKRYENYAPLNSLSQILR-ERASTDLRDRPPPMLTKGDKLDSKRFCE 294
+ R E + K + +++ ++ + + E+ DL + + +GD +++ +
Sbjct: 84 NNLRVMSLEHRDKDEPVKSHLCQSACDDLSKAEKQLVDLSHKRSDAVVRGDSRQAEQIAK 143
Query: 295 FHDSPDN----NTDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSPTSRRSPTPPRQ 350
D + N L ++D + G SK+ P+P +P PR+
Sbjct: 144 DMDRVKSDAIRNAYSDLMMEDGT--MKAFGVNSKWTP---DKNPMPSDDWKPMTPMKPRK 198
Query: 351 RARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDR 388
RA TP +T+ R N R S R P+R
Sbjct: 199 RAETPKGRKTESRQSNRGNNDNGDQRMTSKATTRSPER 236
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory
element-binding protein) (NRE-binding protein) (DBP-5)
(Bax antagonist selected in saccharomyces 1) (BASS1)
Length = 2426
Score = 35.4 bits (80), Expect = 0.41
Identities = 27/53 (50%), Positives = 31/53 (57%), Gaps = 4/53 (7%)
Query: 329 SYGDLPLPRSPT-SRRSPTPPRQRARTPPRH-RTDDRYCRAP-QNGRSPDRRR 378
S+ P RS T SRRS TP R R+RTP R RT R R P + R+P RRR
Sbjct: 1948 SFSISPSRRSRTPSRRSRTPSR-RSRTPSRRSRTPSRRSRTPSRRSRTPSRRR 1999
Score = 35.4 bits (80), Expect = 0.41
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 341 SRRSPTPPRQRARTPPRH-RTDDRYCRAP-QNGRSPDRRRSFDRGRIPDRHGRDEVIRHH 398
SRRS TP R R+RTP R RT R R P + R+P R R R P R R +
Sbjct: 1954 SRRSRTPSR-RSRTPSRRSRTPSRRSRTPSRRSRTPSR-----RSRTPSRRRRSRSVVRR 2007
Query: 399 RMNQIS 404
R IS
Sbjct: 2008 RSFSIS 2013
>RNP4_HUMAN (Q86U06) RNA-binding region containing protein 4
(Splicing factor SF2) (PP239)
Length = 439
Score = 35.0 bits (79), Expect = 0.54
Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 10/74 (13%)
Query: 331 GDLPLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRR-----RSFDRGRI 385
G + + +RS + + R R R R DRY R RSP R+ RS+DR
Sbjct: 51 GSSTIGETSKKKRSRSHNKSRDRKRSRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDR--- 107
Query: 386 PDRHGRDEVIRHHR 399
RHG + R HR
Sbjct: 108 --RHGSESRSRDHR 119
>BAP1_MOUSE (Q6RHR9) BAI1-associated protein 1 (BAP-1) (Membrane
associated guanylate kinase inverted-1) (MAGI-1)
Length = 1471
Score = 35.0 bits (79), Expect = 0.54
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 337 RSPTSRRSPTPPRQRA---------RTPPRHRTDDRYCRAP----QNGRSPDRRRSFDRG 383
RSPT R+ +P R+R R+P R R RA + RSP+RRR
Sbjct: 1366 RSPTRRKDSSPSRRRRSLERLLDQRRSPERRRGGSPERRAKSTDRRRARSPERRRE---- 1421
Query: 384 RIPDRHGRDEVIRHHRMNQISVGSIAG 410
R D+ RD+ + H + + AG
Sbjct: 1422 RSLDKRNRDDKVGHREREEAGLKLEAG 1448
>IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2
Length = 892
Score = 34.7 bits (78), Expect = 0.70
Identities = 22/71 (30%), Positives = 39/71 (53%), Gaps = 3/71 (4%)
Query: 185 GKKAKTVEEFQARSEKYINMEDAAALRASNQADQQKAPEWAKDPGDTT--RIRESRRKNQ 242
G K+K+V+ + Y+N +A +A QA Q++A E A+ + T +I E + K +
Sbjct: 76 GGKSKSVQIEVRKKRTYVNTPEAEQAKAEEQA-QREAEEQAQREAEATAQKIAEEKAKRE 134
Query: 243 DEKKPKRKRYE 253
E++ KR+ E
Sbjct: 135 AEEQAKREAAE 145
>BAP1_HUMAN (Q96QZ7) BAI1-associated protein 1 (BAP-1) (Membrane
associated guanylate kinase inverted-1) (MAGI-1)
(Atrophin-1 interacting protein 3) (AIP3) (WW
domain-containing protein 3) (WWP3) (Trinucleotide
repeat-containing gene 19 protein)
Length = 1491
Score = 33.9 bits (76), Expect = 1.2
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 337 RSPTSRRSPTPPRQRA---------RTPPRHRTDDRYCRAP----QNGRSPDRRRSFDRG 383
RSPT RR +P R+R R+P R R RA + RSP+RRR
Sbjct: 1386 RSPTRRRDGSPSRRRRSLERLLEQRRSPERRRGGSPERRAKSTDRRRARSPERRRE---- 1441
Query: 384 RIPDRHGRDEVIRHHRMNQISVGSIAG 410
R D+ R++ H + ++ AG
Sbjct: 1442 RSLDKRNREDRASHREREEANLKQDAG 1468
Score = 31.2 bits (69), Expect = 7.8
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 338 SPTSRRSPTPPRQRARTPPRHR------TDDRYCRAPQNGRSPDRR-RSFD--RGRIPDR 388
SP RR +P R+R +P R R + R + G SP+RR +S D R R P+R
Sbjct: 1379 SPERRRERSPTRRRDGSPSRRRRSLERLLEQRRSPERRRGGSPERRAKSTDRRRARSPER 1438
Query: 389 HGRDEVIRHHRMNQIS 404
+ + +R ++ S
Sbjct: 1439 RRERSLDKRNREDRAS 1454
>TFE3_HUMAN (P19532) Transcription factor E3
Length = 743
Score = 33.1 bits (74), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (56%)
Query: 96 KLVPEPPSRLPPHLGRGDGKLPLPVLVGEEHTEIR 130
+L P PP RLP +LGRGD P P +++R
Sbjct: 598 RLFPHPPMRLPRYLGRGDVIRPHPCNQARRRSQMR 632
>SFR5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5
(Pre-mRNA splicing factor SRP40) (Delayed-early protein
HRS)
Length = 270
Score = 33.1 bits (74), Expect = 2.0
Identities = 43/155 (27%), Positives = 58/155 (36%), Gaps = 20/155 (12%)
Query: 238 RRKNQDEKKPKRKRYENYAPLNS---LSQILRERASTDLRDRPPPMLTKGDKLDSKRFCE 294
RRK K R EN + S L +R+ D P L +G E
Sbjct: 98 RRKCSTCKNRNRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEG-------VVE 150
Query: 295 FHDSPD-NNTDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSPTSRRSPTPPRQRAR 353
F D N E L+ K K+ G SK + S RS + RS T R+R
Sbjct: 151 FASYGDLKNAIEKLSWKRKL-----TGEKSKLIEGSKRH----RSRSRSRSRTRSSLRSR 201
Query: 354 TPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDR 388
+ R R Y R+ RS + RS R +P++
Sbjct: 202 SRSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEK 236
>RLX3_STAAU (P14491) RLX protein
Length = 330
Score = 33.1 bits (74), Expect = 2.0
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 195 QARSEKYINMEDAAALRASNQADQQKAPEWAKDPGDTTRIRESRRKNQDEKKPKRKRYEN 254
+ R E+ E A R + D+++ EWA+ T IR++R +++ E++ + ++
Sbjct: 238 EQREEQARQRELEQARREKIKRDKEREKEWARFNRSTQAIRQNRERSEREERERERKARE 297
Query: 255 YAPLNSLSQILRERASTDLRDRPPPMLTKGDKLD 288
N ++ ERA + ++ T+G L+
Sbjct: 298 LEEQNRRAR--EERARQERENKHTHEKTRGFDLE 329
>BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui
Length = 677
Score = 33.1 bits (74), Expect = 2.0
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 184 DGKKAKTVEEFQARSEKYINMEDAAALRASNQADQQKA-----PEWAKDPGDTTRIRESR 238
D K+ E Q +SE+ + EDA A N A+ Q PE K G +E +
Sbjct: 553 DEKQEVVKVEAQEKSEE-VKPEDANASGTVNPAETQPPAADTRPEDNKSTGGDAEKKEDK 611
Query: 239 RKNQDE-----KKPKRKRYENYAPLNSLSQILRERASTDLRDRPPPMLTKGDKLDSK 290
+ + KK + + + AP +S + E A++ L P P+ KGDK DS+
Sbjct: 612 KSTPKKVTKTVKKRDKSKDKKDAPKDSNKEDKIE-ANSVLNPEPMPVDEKGDKTDSQ 667
>RNB_HHV11 (P04487) RNA-binding protein (Vmw21)
Length = 161
Score = 32.7 bits (73), Expect = 2.7
Identities = 23/61 (37%), Positives = 26/61 (41%), Gaps = 10/61 (16%)
Query: 336 PRSPTSRRSPTPPRQ--RARTP--------PRHRTDDRYCRAPQNGRSPDRRRSFDRGRI 385
PR P R P PPR+ R P PR D R R+P+ RSP RS R
Sbjct: 88 PRVPREPRVPRPPREPREPRVPRAPRDPRVPRDPRDPRQPRSPREPRSPREPRSPREPRT 147
Query: 386 P 386
P
Sbjct: 148 P 148
Score = 32.3 bits (72), Expect = 3.5
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 337 RSPTSRRSPTPPRQ-RARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIP 386
R PT R+P PR+ R PPR + R RAP++ R P R + R P
Sbjct: 80 RPPTIPRTPRVPREPRVPRPPREPREPRVPRAPRDPRVPRDPRDPRQPRSP 130
>PPIG_HUMAN (Q13427) Peptidyl-prolyl cis-trans isomerase G (EC
5.2.1.8) (Peptidyl-prolyl isomerase G) (PPIase G)
(Rotamase G) (Cyclophilin G) (Clk associating
RS-cyclophilin) (CARS-cyclophilin) (CARS-Cyp) (SRcyp)
(CASP10)
Length = 754
Score = 32.7 bits (73), Expect = 2.7
Identities = 47/210 (22%), Positives = 82/210 (38%), Gaps = 24/210 (11%)
Query: 187 KAKTVEEFQARSEKYINMEDAAALRASNQADQQKAPEWAKDP----GDTTRIRESRRKNQ 242
K + + + +KY N A S ++K+ +D + R+R SR K +
Sbjct: 434 KERDIRRNSEKDDKYKNKVKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMR-SRSKGR 492
Query: 243 DEKKPKRKRYENYAPLNSLSQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFHDSPDNN 302
D + K K ++ + +ER+ + +++ + +K ++ D + E +
Sbjct: 493 DHENVKEKEKQSDSKGKD-----QERSRS--KEKSKQLESKSNEHDHSKSKEKDRRAQSR 545
Query: 303 TDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSPTSR-RSPTPPRQRARTPPRHRTD 361
+ EC K K R S+ R + R RS T R R+R+ HR
Sbjct: 546 SRECDITKGKHSYNSRTRERSR-----------SRDRSRRVRSRTHDRDRSRSKEYHRYR 594
Query: 362 DRYCRAPQNGRSPDRRRSFDRGRIPDRHGR 391
++ R RS +RR R R DR R
Sbjct: 595 EQEYRRRGRSRSRERRTPPGRSRSKDRRRR 624
>CIW4_HUMAN (Q9NYG8) Potassium channel subfamily K member 4
(TWIK-related arachidonic acid-stimulated potassium
channel protein) (TRAAK) (Two pore K+ channel KT4.1)
Length = 393
Score = 32.7 bits (73), Expect = 2.7
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 334 PLPRSPTSRRSPTPPRQ--RARTPPRHR 359
PLPR+P RR P PPR+ R R P R R
Sbjct: 360 PLPRAPRGRRRPNPPRKPVRPRGPGRPR 387
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.142 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,754,297
Number of Sequences: 164201
Number of extensions: 3311264
Number of successful extensions: 11633
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 11470
Number of HSP's gapped (non-prelim): 126
length of query: 581
length of database: 59,974,054
effective HSP length: 116
effective length of query: 465
effective length of database: 40,926,738
effective search space: 19030933170
effective search space used: 19030933170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0262.11