BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0260.2
(694 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 353 6e-97
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 340 6e-93
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 204 6e-52
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 163 2e-39
YMU0_YEAST (Q04670) Transposon Ty1 protein B 122 4e-27
YME4_YEAST (Q04711) Transposon Ty1 protein B 119 3e-26
YMT5_YEAST (Q04214) Transposon Ty1 protein B 119 4e-26
YJZ9_YEAST (P47100) Transposon Ty1 protein B 119 4e-26
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 118 5e-26
YMD9_YEAST (Q03434) Transposon Ty1 protein B 116 2e-25
YJZ7_YEAST (P47098) Transposon Ty1 protein B 114 9e-25
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 107 8e-23
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 105 5e-22
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 100 2e-20
WR72_ARATH (Q9LXG8) Probable WRKY transcription factor 72 (WRKY ... 36 0.30
VGLI_HHV11 (P06487) Glycoprotein I 35 0.51
RRP3_THOGV (Q9YNA4) RNA-directed RNA polymerase subunit PB2 (EC ... 35 0.51
STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Stu... 35 0.87
TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repe... 34 1.5
ERC6_HUMAN (Q03468) DNA excision repair protein ERCC-6 (Cockayne... 33 1.9
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 353 bits (907), Expect = 6e-97
Identities = 240/707 (33%), Positives = 366/707 (50%), Gaps = 40/707 (5%)
Query: 4 FSFLKTFGSLCYASTLNRNRTKLDPRAQKCVFIGYRHGTKGFLLFDIKSREVLLSRHVLF 63
+S LK FG +A RTKLD ++ C+FIGY G+ L+D ++V+ SR V+F
Sbjct: 645 YSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF 704
Query: 64 HETEFPFKTMEHTLDPCASVSLPSFMGSEALDYTPLPQGQTPDP---QPQVPEVLPVPQT 120
E+E +T + + +P+F+ + P T D Q + P +
Sbjct: 705 RESEV--RTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGE 762
Query: 121 ATRHSTRSRRVPSHFHDYQLALPSSIAALNSSSKVSSTGIKHPLSSVLSYTNLSPKHYAF 180
P+ + L S S + ST VL + P+
Sbjct: 763 QLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPST------EYVLISDDREPE---- 812
Query: 181 TTNVSSTVEPTTYTQAAQCKEWRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWVYRVK 240
S E ++ + Q + AM +E+E+L +N T+ +V+LP K+P+ CKWV+++K
Sbjct: 813 -----SLKEVLSHPEKNQLMK---AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLK 864
Query: 241 HKQDGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTTLRLLLALAASQGWFLHQLDVD 300
D + RYKARLV KG+ Q +G+D+ + FSPV K T++R +L+LAAS + QLDV
Sbjct: 865 KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVK 924
Query: 301 NAFLHGTLDEEIYMRLPPGVS-SPRPNQVCLLQKSLYGLKQASRQWYNTLVAALKSLGYE 359
AFLHG L+EEIYM P G + + + VC L KSLYGLKQA RQWY + +KS Y
Sbjct: 925 TAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYL 984
Query: 360 QCPHDHTLLLKRTS-TSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDLKFF 418
+ D + KR S + LLLYVDD+L+ G I +K L F +KDLG +
Sbjct: 985 KTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQI 1044
Query: 419 LGLEVA--RSAKGICLTQRKYALELLTDAGLLGCKPVRTPMDSTLHLS--------QTGG 468
LG+++ R+++ + L+Q KY +L + KPV TP+ L LS + G
Sbjct: 1045 LGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKG 1104
Query: 469 TLLDDPTSYRRLVGRLLY-LTTTRPDLNYVVQQLSQYLASPTDLHQQAATRVLRYVKGAP 527
+ P Y VG L+Y + TRPD+ + V +S++L +P H +A +LRY++G
Sbjct: 1105 NMAKVP--YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTT 1162
Query: 528 GQGLFFSATASLKLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTKKQTTVSRSSSE 587
G L F + + L+ Y+D+D AG D R+S GY ISW++K Q V+ S++E
Sbjct: 1163 GDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTE 1221
Query: 588 AEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIHIAQNPTFHERTKHIELDC 647
AEY A E+ WL Q L L V ++CD+QSAI +++N +H RTKHI++
Sbjct: 1222 AEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRY 1280
Query: 648 HVVRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLFPTFVLKLGLYN 694
H +R + + +L +ST + AD+ TK +P + F +G+++
Sbjct: 1281 HWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGMHS 1327
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 340 bits (873), Expect = 6e-93
Identities = 196/497 (39%), Positives = 279/497 (55%), Gaps = 8/497 (1%)
Query: 202 WRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWVYRVKHKQDGSIDRYKARLVAKGYTQ 261
W +A++ EL A NNTW I P K + +WV+ VK+ + G+ RYKARLVA+G+TQ
Sbjct: 906 WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965
Query: 262 VEGLDYLDTFSPVAKTTTLRLLLALAASQGWFLHQLDVDNAFLHGTLDEEIYMRLPPGVS 321
+DY +TF+PVA+ ++ R +L+L +HQ+DV AFL+GTL EEIYMRLP G+S
Sbjct: 966 KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025
Query: 322 SPRPNQVCLLQKSLYGLKQASRQWYNTLVAALKSLGYEQCPHDHTLLL--KRTSTSITAL 379
N VC L K++YGLKQA+R W+ ALK + D + + K +
Sbjct: 1026 CNSDN-VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYV 1084
Query: 380 LLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDLKFFLGLEVARSAKGICLTQRKYAL 439
LLYVDDV++ + K +L +FR+ DL ++K F+G+ + I L+Q Y
Sbjct: 1085 LLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVK 1144
Query: 440 ELLTDAGLLGCKPVRTPMDSTLHLSQTGGTLLDDPTSYRRLVGRLLY-LTTTRPDLNYVV 498
++L+ + C V TP+ S ++ D T R L+G L+Y + TRPDL V
Sbjct: 1145 KILSKFNMENCNAVSTPLPSKINYELLNSD-EDCNTPCRSLIGCLMYIMLCTRPDLTTAV 1203
Query: 499 QQLSQYLASPTDLHQQAATRVLRYVKGAPGQGLFFSATASL--KLQAYSDSDWAGCPDTR 556
LS+Y + Q RVLRY+KG L F + K+ Y DSDWAG R
Sbjct: 1204 NILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDR 1263
Query: 557 RSINGYSI-FLGSSLISWRTKKQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVP 615
+S GY +LI W TK+Q +V+ SS+EAEY AL V E WL +L +++++
Sbjct: 1264 KSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLE 1323
Query: 616 FPVPLFCDNQSAIHIAQNPTFHERTKHIELDCHVVRTKLQAGLIHLLPVSTRDQLADIFT 675
P+ ++ DNQ I IA NP+ H+R KHI++ H R ++Q +I L + T +QLADIFT
Sbjct: 1324 NPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFT 1383
Query: 676 KPLPPSLFPTFVLKLGL 692
KPLP + F KLGL
Sbjct: 1384 KPLPAARFVELRDKLGL 1400
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 204 bits (519), Expect = 6e-52
Identities = 106/226 (46%), Positives = 142/226 (61%), Gaps = 1/226 (0%)
Query: 379 LLLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDLKFFLGLEVARSAKGICLTQRKYA 438
LLLYVDD+LLTG+S + + L S F +KDLG + +FLG+++ G+ L+Q KYA
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 439 LELLTDAGLLGCKPVRTPMDSTLHLSQTGGTLLDDPTSYRRLVGRLLYLTTTRPDLNYVV 498
++L +AG+L CKP+ TP+ L+ S DP+ +R +VG L YLT TRPD++Y V
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 499 QQLSQYLASPTDLHQQAATRVLRYVKGAPGQGLFFSATASLKLQAYSDSDWAGCPDTRRS 558
+ Q + PT RVLRYVKG GL+ + L +QA+ DSDWAGC TRRS
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 559 INGYSIFLGSSLISWRTKKQTTVSRSSSEAEYRALAAIVCEVQWLS 604
G+ FLG ++ISW K+Q TVSRSS+E EYRALA E+ W S
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 163 bits (412), Expect = 2e-39
Identities = 103/308 (33%), Positives = 165/308 (53%), Gaps = 4/308 (1%)
Query: 297 LDVDNAFLHGTLDEEIYMRLPPG-VSSPRPNQVCLLQKSLYGLKQASRQWYNTLVAALKS 355
+DVD AFL+ T+DE IY++ PPG V+ P+ V L +YGLKQA W + LK
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 356 LGYEQCPHDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDL 415
+G+ + +H L + TS + +YVDD+L+ S + VK L + +KDLG +
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 416 KFFLGLEVARSAKG-ICLTQRKYALELLTDAGLLGCKPVRTPMDSTLHLSQTGGTLLDDP 474
FLGL + +S G I L+ + Y + +++ + K +TP+ ++ L +T L D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 475 TSYRRLVGRLLYLTTT-RPDLNYVVQQLSQYLASPTDLHQQAATRVLRYVKGAPGQGLFF 533
T Y+ +VG+LL+ T RPD++Y V LS++L P +H ++A RVLRY+ L +
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 534 SATASLKLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTKK-QTTVSRSSSEAEYRA 592
+ + + L Y D+ D S GY L + ++W +KK + + S+EAEY
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 593 LAAIVCEV 600
+ V E+
Sbjct: 301 ASETVMEI 308
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 122 bits (305), Expect = 4e-27
Identities = 138/528 (26%), Positives = 244/528 (46%), Gaps = 50/528 (9%)
Query: 189 EPTTYTQAAQCKE-WRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWV----YRVKHKQ 243
E TY + + KE + A KE+ L + TW D +K I K V + K+
Sbjct: 809 EAITYNKDIKEKEKYIQAYHKEVNQLLKMKTW-DTDRYYDRKEIDPKRVINSMFIFNRKR 867
Query: 244 DGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTT-----LRLLLALAASQGWFLHQLD 298
DG+ +KAR VA+G Q + DT+ P ++ T L L+LA +++ QLD
Sbjct: 868 DGT---HKARFVARGDIQ-----HPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLD 919
Query: 299 VDNAFLHGTLDEEIYMRLPPGVSSPRPNQVCLLQKSLYGLKQASRQWYNTLVAAL-KSLG 357
+ +A+L+ + EE+Y+R PP + +++ L+KSLYGLKQ+ WY T+ + L K G
Sbjct: 920 ISSAYLYADIKEELYIRPPPHLG--MNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCG 977
Query: 358 YEQCPHDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQF--RIKDLG-- 413
E+ + + K + +I L+VDD++L + + + L Q+ +I +LG
Sbjct: 978 MEEV-RGWSCVFKNSQVTI---CLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGES 1033
Query: 414 --DLKF-FLGLEVA-RSAKGICLTQRKYALELLTDAGL-LGCK--PVRTPMDSTLHLSQT 466
++++ LGLE+ + K + L E + + L K + P L++ Q
Sbjct: 1034 DNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQ 1093
Query: 467 GGTLLDDPTSYR-----RLVGRLLYL-TTTRPDLNYVVQQLSQYLASPTDLHQQAATRVL 520
L +D + +L+G Y+ R DL Y + L+Q++ P+ ++
Sbjct: 1094 ELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELI 1153
Query: 521 RYVKGAPGQGLFFSATASL----KLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTK 576
+++ + L + + + KL SD+ + P + I G L +I ++
Sbjct: 1154 QFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQPYYKSQI-GNIYLLNGKVIGGKST 1212
Query: 577 KQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIH-IAQNPT 635
K + S++EAE A++ V + LS+L Q L+ + P L D++S I I N
Sbjct: 1213 KASLTCTSTTEAEIHAISESVPLLNNLSHLVQELN-KKPITKGLLTDSKSTISIIISNNE 1271
Query: 636 FHERTKHIELDCHVVRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLF 683
R + +R ++ +H+ + T+ +AD+ TKPLP F
Sbjct: 1272 EKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 119 bits (298), Expect = 3e-26
Identities = 138/528 (26%), Positives = 244/528 (46%), Gaps = 50/528 (9%)
Query: 189 EPTTYTQAAQCKE-WRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWV----YRVKHKQ 243
E TY + + KE + +A KE+ L + NTW D +K I K V + K+
Sbjct: 809 EAITYNKDIKEKEKYIEAYHKEVNQLLKMNTW-DTDKYYDRKEIDPKRVINSMFIFNRKR 867
Query: 244 DGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTT-----LRLLLALAASQGWFLHQLD 298
DG+ +KAR VA+G Q + DT+ ++ T L L+LA +++ QLD
Sbjct: 868 DGT---HKARFVARGDIQ-----HPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLD 919
Query: 299 VDNAFLHGTLDEEIYMRLPPGVSSPRPNQVCLLQKSLYGLKQASRQWYNTLVAAL-KSLG 357
+ +A+L+ + EE+Y+R PP + +++ L+KSLYGLKQ+ WY T+ + L K G
Sbjct: 920 ISSAYLYADIKEELYIRPPPHLG--MNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCG 977
Query: 358 YEQCPHDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQF--RIKDLG-- 413
E+ + + K + +I L+VDD++L + + + L Q+ +I +LG
Sbjct: 978 MEEV-RGWSCVFKNSQVTI---CLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGES 1033
Query: 414 --DLKF-FLGLEVA-RSAKGICLTQRKYALELLTDAGL-LGCK--PVRTPMDSTLHLSQT 466
++++ LGLE+ + K + L E + + L K + P L++ Q
Sbjct: 1034 DNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQD 1093
Query: 467 GGTLLDDP-----TSYRRLVGRLLYL-TTTRPDLNYVVQQLSQYLASPTDLHQQAATRVL 520
+ +D ++L+G Y+ R DL Y + L+Q++ P+ ++
Sbjct: 1094 ELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELI 1153
Query: 521 RYVKGAPGQGLFFSATASL----KLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTK 576
+++ + L + KL A SD+ + P + I G L +I ++
Sbjct: 1154 QFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPYYKSQI-GNIYLLNGKVIGGKST 1212
Query: 577 KQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIH-IAQNPT 635
K + S++EAE A++ V + LS+L Q L+ + P L D++S I I N
Sbjct: 1213 KASLTCTSTTEAEIHAISESVPLLNNLSHLVQELN-KKPITKGLLTDSKSTISIIISNNE 1271
Query: 636 FHERTKHIELDCHVVRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLF 683
R + +R ++ +H+ + T+ +AD+ TKPLP F
Sbjct: 1272 EKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 119 bits (297), Expect = 4e-26
Identities = 137/528 (25%), Positives = 240/528 (44%), Gaps = 50/528 (9%)
Query: 189 EPTTYTQAAQCKE-WRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWV----YRVKHKQ 243
E TY + + KE + +A KE+ L + TW D +K I K V + K+
Sbjct: 809 EAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW-DTDKYYDRKEIDPKRVINSMFIFNRKR 867
Query: 244 DGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTT-----LRLLLALAASQGWFLHQLD 298
DG+ +KAR VA+G Q + DT+ ++ T L L+LA +++ QLD
Sbjct: 868 DGT---HKARFVARGDIQ-----HPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLD 919
Query: 299 VDNAFLHGTLDEEIYMRLPPGVSSPRPNQVCLLQKSLYGLKQASRQWYNTLVAAL-KSLG 357
+ +A+L+ + EE+Y+R PP + +++ L+KSLYGLKQ+ WY T+ + L K G
Sbjct: 920 ISSAYLYADIKEELYIRPPPHLG--MNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCG 977
Query: 358 YEQCPHDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQF--RIKDLG-- 413
E+ + S + L+VDD++L + + + L Q+ +I +LG
Sbjct: 978 MEEVRGWSCVF----ENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGES 1033
Query: 414 --DLKF-FLGLEVA-RSAKGICLTQRKYALELLTDAGL-LGCK--PVRTPMDSTLHLSQT 466
++++ LGLE+ + K + L E + + L K + P L++ Q
Sbjct: 1034 DEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQ 1093
Query: 467 GGTLLDDPTSYR-----RLVGRLLYL-TTTRPDLNYVVQQLSQYLASPTDLHQQAATRVL 520
L +D + +L+G Y+ R DL Y + L+Q++ P+ ++
Sbjct: 1094 ELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELI 1153
Query: 521 RYVKGAPGQGLFFSATASL----KLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTK 576
+++ + L + + + KL SD+ + P + I G L +I ++
Sbjct: 1154 QFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQPYYKSQI-GNIYLLNGKVIGGKST 1212
Query: 577 KQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIH-IAQNPT 635
K + S++EAE A++ V + LSYL Q L + P L D++S I I N
Sbjct: 1213 KASLTCTSTTEAEIHAISESVPLLNNLSYLIQELD-KKPITKGLLTDSKSTISIIISNNE 1271
Query: 636 FHERTKHIELDCHVVRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLF 683
R + +R ++ +H+ + T+ +AD+ TKPLP F
Sbjct: 1272 EKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 119 bits (297), Expect = 4e-26
Identities = 138/531 (25%), Positives = 243/531 (44%), Gaps = 56/531 (10%)
Query: 189 EPTTYTQAAQCKE-WRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWV----YRVKHKQ 243
E TY + + KE + +A KE+ L + TW D +K I K V + K+
Sbjct: 1236 EAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW-DTDEYYDRKEIDPKRVINSMFIFNKKR 1294
Query: 244 DGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTT-----LRLLLALAASQGWFLHQLD 298
DG+ +KAR VA+G Q + DT+ ++ T L L+LA +++ QLD
Sbjct: 1295 DGT---HKARFVARGDIQ-----HPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLD 1346
Query: 299 VDNAFLHGTLDEEIYMRLPPGVSSPRPNQVCLLQKSLYGLKQASRQWYNTLVAALKSLGY 358
+ +A+L+ + EE+Y+R PP + +++ L+KSLYGLKQ+ WY T +KS
Sbjct: 1347 ISSAYLYADIKEELYIRPPPHLG--MNDKLIRLKKSLYGLKQSGANWYET----IKSYLI 1400
Query: 359 EQCPHDH----TLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQF--RIKDL 412
+QC + + + K + +I L+VDD++L + + + L Q+ +I +L
Sbjct: 1401 QQCGMEEVRGWSCVFKNSQVTI---CLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINL 1457
Query: 413 G----DLKF-FLGLEVA-RSAKGICLTQRKYALELLTDAGL-LGCK--PVRTPMDSTLHL 463
G ++++ LGLE+ + K + L E + + L K + P L++
Sbjct: 1458 GESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYI 1517
Query: 464 SQTGGTLLDDPTSYR-----RLVGRLLYL-TTTRPDLNYVVQQLSQYLASPTDLHQQAAT 517
Q L +D + +L+G Y+ R DL Y + L+Q++ P+
Sbjct: 1518 DQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTY 1577
Query: 518 RVLRYVKGAPGQGLFFSATASL----KLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISW 573
+++++ + L + + + KL SD+ + P + I G L +I
Sbjct: 1578 ELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQPYYKSQI-GNIYLLNGKVIGG 1636
Query: 574 RTKKQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIH-IAQ 632
++ K + S++EAE A++ V + LSYL Q L + P L D++S I I
Sbjct: 1637 KSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELD-KKPITKGLLTDSKSTISIIIS 1695
Query: 633 NPTFHERTKHIELDCHVVRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLF 683
N R + +R ++ +H+ + T+ +AD+ TKPLP F
Sbjct: 1696 NNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1746
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 118 bits (296), Expect = 5e-26
Identities = 131/524 (25%), Positives = 242/524 (46%), Gaps = 42/524 (8%)
Query: 189 EPTTYTQAAQCKE-WRDAMDKELEALSRNNTWLIV------DLPPTKKPIGCKWVYRVKH 241
E TY + + K+ + +A KE+ L + NTW D+ P KK I +++
Sbjct: 1251 EAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDP-KKVINSMFIFN--K 1307
Query: 242 KQDGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTTLRLLLALAASQGWFLHQLDVDN 301
K+DG+ +KAR VA+G Q D S L L++A +++ QLD+ +
Sbjct: 1308 KRDGT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISS 1364
Query: 302 AFLHGTLDEEIYMRLPPGVSSPRPNQVCLLQKSLYGLKQASRQWYNTLVAALKSLGYEQC 361
A+L+ + EE+Y+R PP + +++ L+KSLYGLKQ+ WY T+ + L + Q
Sbjct: 1365 AYLYADIKEELYIRPPPHLG--LNDKLLRLRKSLYGLKQSGANWYETIKSYLINCCDMQE 1422
Query: 362 PHDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQF--RIKDLG----DL 415
+ + K + +I L+VDD++L + + + L Q+ +I +LG ++
Sbjct: 1423 VRGWSCVFKNSQVTI---CLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEI 1479
Query: 416 KF-FLGLEVA-RSAKGICLTQRKYALELLTDAGL---LGCKPVRTPMDSTLHLSQTGGTL 470
++ LGLE+ + +K + L K E L + K +R P ++ Q +
Sbjct: 1480 QYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEI 1539
Query: 471 LDDP-----TSYRRLVGRLLYL-TTTRPDLNYVVQQLSQYLASPTDLHQQAATRVLRYVK 524
+D ++L+G Y+ R DL Y + L+Q++ P+ +++++
Sbjct: 1540 DEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMW 1599
Query: 525 GAPGQGLFFSATASL----KLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTKKQTT 580
+ L + KL A SD+ + P + I G L +I ++ K +
Sbjct: 1600 DTRDKQLIWHKNKPTKPDNKLVAISDASYGNQPYYKSQI-GNIFLLNGKVIGGKSTKASL 1658
Query: 581 VSRSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIHIAQNPTFHE-R 639
S++EAE A++ + + LS+L Q L+ + P L D++S I I ++ + R
Sbjct: 1659 TCTSTTEAEIHAVSEAIPLLNNLSHLVQELN-KKPIIKGLLTDSRSTISIIKSTNEEKFR 1717
Query: 640 TKHIELDCHVVRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLF 683
+ +R ++ +++ + T+ +AD+ TKPLP F
Sbjct: 1718 NRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1761
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 116 bits (291), Expect = 2e-25
Identities = 136/528 (25%), Positives = 245/528 (45%), Gaps = 50/528 (9%)
Query: 189 EPTTYTQAAQCKE-WRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWV----YRVKHKQ 243
E TY + + KE + +A KE+ L + TW D +K I K V + K+
Sbjct: 809 EAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW-DTDEYYDRKEIDPKRVINSMFIFNKKR 867
Query: 244 DGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTT-----LRLLLALAASQGWFLHQLD 298
DG+ +KAR VA+G Q + DT+ ++ T L L+LA +++ QLD
Sbjct: 868 DGT---HKARFVARGDIQ-----HPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLD 919
Query: 299 VDNAFLHGTLDEEIYMRLPPGVSSPRPNQVCLLQKSLYGLKQASRQWYNTLVAAL-KSLG 357
+ +A+L+ + EE+Y+R PP + +++ L+KSLYGLKQ+ WY T+ + L K G
Sbjct: 920 ISSAYLYADIKEELYIRPPPHLG--MNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCG 977
Query: 358 YEQCPHDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQF--RIKDLG-- 413
E+ + + K + +I L+VDD++L + + + L Q+ +I +LG
Sbjct: 978 MEEV-RGWSCVFKNSQVTI---CLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGES 1033
Query: 414 --DLKF-FLGLEVA-RSAKGICLTQRKYALELLTDAGL-LGCK--PVRTPMDSTLHLSQT 466
++++ LGLE+ + K + L E + + L K + P L++ Q
Sbjct: 1034 DNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQD 1093
Query: 467 GGTLLDDP-----TSYRRLVGRLLYL-TTTRPDLNYVVQQLSQYLASPTDLHQQAATRVL 520
+ +D ++L+G Y+ R DL Y + L+Q++ P+ ++
Sbjct: 1094 ELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELI 1153
Query: 521 RYVKGAPGQGLFFSATASL----KLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTK 576
+++ + L + KL A SD+ + P + I G L +I ++
Sbjct: 1154 QFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPYYKSQI-GNIYLLNGKVIGGKST 1212
Query: 577 KQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIHIAQNPTF 636
K + S++EAE A++ V + LSYL Q L+ + P L D++S I I ++
Sbjct: 1213 KASLTCTSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKSTNE 1271
Query: 637 HE-RTKHIELDCHVVRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLF 683
+ R + +R ++ +++ + T+ +AD+ TKPLP F
Sbjct: 1272 EKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1319
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 114 bits (285), Expect = 9e-25
Identities = 135/528 (25%), Positives = 244/528 (45%), Gaps = 50/528 (9%)
Query: 189 EPTTYTQAAQCKE-WRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWV----YRVKHKQ 243
E TY + + KE + +A KE+ L + TW D +K I K V + K+
Sbjct: 1236 EAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW-DTDEYYDRKEIDPKRVINSMFIFNKKR 1294
Query: 244 DGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTT-----LRLLLALAASQGWFLHQLD 298
DG+ +KAR VA+G Q + DT+ ++ T L L+LA +++ QLD
Sbjct: 1295 DGT---HKARFVARGDIQ-----HPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLD 1346
Query: 299 VDNAFLHGTLDEEIYMRLPPGVSSPRPNQVCLLQKSLYGLKQASRQWYNTLVAAL-KSLG 357
+ +A+L+ + EE+Y+R PP + +++ L+KS YGLKQ+ WY T+ + L K G
Sbjct: 1347 ISSAYLYADIKEELYIRPPPHLG--MNDKLIRLKKSHYGLKQSGANWYETIKSYLIKQCG 1404
Query: 358 YEQCPHDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQF--RIKDLG-- 413
E+ + + K + +I L+VDD++L + + + L Q+ +I +LG
Sbjct: 1405 MEEV-RGWSCVFKNSQVTI---CLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGES 1460
Query: 414 --DLKF-FLGLEVA-RSAKGICLTQRKYALELLTDAGL-LGCK--PVRTPMDSTLHLSQT 466
++++ LGLE+ + K + L E + + L K + P L++ Q
Sbjct: 1461 DNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQD 1520
Query: 467 GGTLLDDP-----TSYRRLVGRLLYL-TTTRPDLNYVVQQLSQYLASPTDLHQQAATRVL 520
+ +D ++L+G Y+ R DL Y + L+Q++ P+ ++
Sbjct: 1521 ELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELI 1580
Query: 521 RYVKGAPGQGLFFSATASL----KLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTK 576
+++ + L + KL A SD+ + P + I G L +I ++
Sbjct: 1581 QFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPYYKSQI-GNIFLLNGKVIGGKST 1639
Query: 577 KQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIHIAQNPTF 636
K + S++EAE A++ V + LSYL Q L+ + P L D++S I I ++
Sbjct: 1640 KASLTCTSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKSTNE 1698
Query: 637 HE-RTKHIELDCHVVRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLF 683
+ R + +R ++ +++ + T+ +AD+ TKPLP F
Sbjct: 1699 EKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1746
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 107 bits (268), Expect = 8e-23
Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Query: 173 LSPKHYAFTTNVSSTVEPTTYTQAAQCKEWRDAMDKELEALSRNNTWLIVDLPPTKKPIG 232
L+PK Y+ T + EP + A + W AM +EL+ALSRN TW++V P + +G
Sbjct: 12 LNPK-YSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILG 70
Query: 233 CKWVYRVKHKQDGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTTLRLLLALA 287
CKWV++ K DG++DR KARLVAKG+ Q EG+ +++T+SPV +T T+R +L +A
Sbjct: 71 CKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 105 bits (261), Expect = 5e-22
Identities = 106/465 (22%), Positives = 210/465 (44%), Gaps = 43/465 (9%)
Query: 250 YKARLVAKGYTQVEGLDYLDTFSPVAKTTT----LRLLLALAASQGWFLHQLDVDNAFLH 305
YKAR+V +G TQ DT+S + + +++ L +A ++ F+ LD+++AFL+
Sbjct: 1337 YKARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLY 1391
Query: 306 GTLDEEIYMRLPPGVSSPRPNQ---VCLLQKSLYGLKQASRQWYNTLVAALKSLGYEQCP 362
L+EEIY+ P P+ V L K+LYGLKQ+ ++W + L L +G +
Sbjct: 1392 AKLEEEIYI--------PHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKD-- 1441
Query: 363 HDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDL------K 416
+ +T L +T + +YVDD ++ ++ + + + L S F +K G L
Sbjct: 1442 NSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDT 1501
Query: 417 FFLGLEVARSAK--GICLTQRKY--ALELLTDAGLLGCKPVRTPMDSTLHLSQTGGTLLD 472
LG+++ + + I LT + + ++ + L + P ST + L
Sbjct: 1502 DILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQM 1561
Query: 473 DPTSYR-------RLVGRLLYLT-TTRPDLNYVVQQLSQYLASPTDLHQQAATRVLRYVK 524
+R +L+G L Y+ R D+ + V+++++ + P + ++++Y+
Sbjct: 1562 SEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLV 1621
Query: 525 GAPGQGLFF--SATASLKLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTKKQTTVS 582
G+ + K+ A +D+ D + I G ++ G ++ + + K T
Sbjct: 1622 RYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRI-GVILWYGMNIFNVYSNKSTNRC 1680
Query: 583 RSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIHIAQNPTFHERTKH 642
SS+EAE A+ + + L + L + + D++ AI + K
Sbjct: 1681 VSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKF 1740
Query: 643 IELDCHVVRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLFPTFV 687
+ +++ K++ I LL ++ + +AD+ TKP+ S F F+
Sbjct: 1741 TWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRFI 1785
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 99.8 bits (247), Expect = 2e-20
Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 485 LYLTTTRPDLNYVVQQLSQYLASPTDLHQQAATRVLRYVKGAPGQGLFFSATASLKLQAY 544
+YLT TRPDL + V +LSQ+ ++ QA +VL YVKG GQGLF+SAT+ L+L+A+
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 545 SDSDWAGCPDTRRSINGY 562
+DSDWA CPDTRRS+ G+
Sbjct: 61 ADSDWASCPDTRRSVTGF 78
>WR72_ARATH (Q9LXG8) Probable WRKY transcription factor 72 (WRKY
DNA-binding protein 72)
Length = 548
Score = 36.2 bits (82), Expect = 0.30
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Query: 63 FHETEFPFKTMEHTLDPCASVSLPSFMGSEALDYTPLPQGQTPDPQPQVPEVLPVPQTAT 122
F T F + T ++++LP+ G+ YTP P + + + Q+ T
Sbjct: 379 FPSTSLNFSSTSSTSSNPSTLNLPAIWGNGYSSYTPYPYNNVQFGTSNLGKTVQNSQSLT 438
Query: 123 RHSTRSRRVPSHFHDYQLALPSSIAALNSSSKVSSTGIKHPLSSVLSYTN 172
T++ FH A S++ N ++ G +H +S+ + TN
Sbjct: 439 ETLTKALTSDPSFHSVIAAAISTMVGSNGEQQI--VGPRHSISNNIQQTN 486
>VGLI_HHV11 (P06487) Glycoprotein I
Length = 390
Score = 35.4 bits (80), Expect = 0.51
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 76 TLDPCASVSLPSFMGSEALDYTPLPQGQTPDPQPQVPEVL-PVPQTATRHSTRSRRVPSH 134
T P S ++P+ S TP P G DP+PQ P V P ATR + SR +
Sbjct: 219 TTIPAPSTTIPAPQAST----TPFPTG---DPKPQPPGVNHEPPSNATRATRDSRYALTV 271
Query: 135 FHDYQLALPSSIAAL 149
Q+A+P+SI AL
Sbjct: 272 TQIIQIAIPASIIAL 286
>RRP3_THOGV (Q9YNA4) RNA-directed RNA polymerase subunit PB2 (EC
2.7.7.48)
Length = 769
Score = 35.4 bits (80), Expect = 0.51
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 534 SATASLKLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTKKQTTVSRS----SSEAE 589
SA L+ + SD DW CP R ++ +I GS I R KKQT V R+ S+ E
Sbjct: 597 SAKRKLQEEITSDPDWHQCPRKRAKMSYLAIIAGS--IQDRDKKQTNVPRAFMLRGSQIE 654
Query: 590 Y 590
Y
Sbjct: 655 Y 655
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-)
(Stubble-stubbloid protein)
Length = 786
Score = 34.7 bits (78), Expect = 0.87
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 98 PLPQGQTPDPQPQVPEVLPVPQTATRHSTRSRRVPSHFHDYQLALPSSIAALNSSSKVSS 157
P+ ++P P VP P T+T ++ S P+ H Q P+ L+ + +++
Sbjct: 342 PIVYDRSPPPPSSVP-----PSTSTSTTSTSLIWPAQTHPPQPHRPTR-PQLSPGTSLAA 395
Query: 158 TGIKHPLSSVLSYTNLSPKHYAFTTNVSSTVEPTTYTQAAQCKEWRDAMDKELEALSRNN 217
+ H SS S T+ + TT T PTT T+ + + A S ++
Sbjct: 396 SSSSHWPSSTTSTTSSTTSTTTTTTTTRRTTTPTTTTRRTTTNKPTRPYQRPTTATSSSS 455
Query: 218 TWLIVD-LPPTKKPI 231
T P T +PI
Sbjct: 456 TSTTSSKTPTTTRPI 470
>TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repeat
protein 3) (TPR repeat protein D)
Length = 2025
Score = 33.9 bits (76), Expect = 1.5
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 19/160 (11%)
Query: 46 LLFDIKSREVLLSRHVLFHETEFPFKTMEHTLDPCASVSLPSFMGSEALDYTPLPQGQTP 105
+L D+K S V + T PF+ + T P A +++ + YTPL +
Sbjct: 1299 VLEDVKPTYWAQSHLVTGYCTYLPFQRFDITQTPPAYINVLPGLPQYTSIYTPL---ASL 1355
Query: 106 DPQPQVPEVLPVPQTATRHSTRSRRVPSHFHDYQL--------ALPSSIAALNSSSKVS- 156
P+ Q+P +PV + + + ++F + L + S L S +S
Sbjct: 1356 SPEYQLPRSVPVVPSFVANDRADKNAAAYFEGHHLNAENVAGHQIASETQILEGSLGISV 1415
Query: 157 ----STGIKHPLSSVLSYTNLSPKHYAFTTNVSSTVEPTT 192
STG H +VLS +N + +H + N + +T
Sbjct: 1416 KSHCSTGDAH---TVLSESNRNDEHCGNSNNKCEVIPEST 1452
>ERC6_HUMAN (Q03468) DNA excision repair protein ERCC-6 (Cockayne
syndrome protein CSB)
Length = 1493
Score = 33.5 bits (75), Expect = 1.9
Identities = 15/58 (25%), Positives = 32/58 (54%)
Query: 457 MDSTLHLSQTGGTLLDDPTSYRRLVGRLLYLTTTRPDLNYVVQQLSQYLASPTDLHQQ 514
+D+ +H + L+D YR ++ L TT+ +N +++QLS A+ D++++
Sbjct: 113 VDNAIHEASRASQLVDVEKEYRSVLDDLTSCTTSLRQINKIIEQLSPQAATSRDINRK 170
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,003,296
Number of Sequences: 164201
Number of extensions: 3399835
Number of successful extensions: 8983
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8920
Number of HSP's gapped (non-prelim): 37
length of query: 694
length of database: 59,974,054
effective HSP length: 117
effective length of query: 577
effective length of database: 40,762,537
effective search space: 23519983849
effective search space used: 23519983849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0260.2