BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0260.13
(1003 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun... 66 4e-10
MC3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein) 65 7e-10
MC3A_HUMAN (O60318) 80 kda MCM3-associated protein (GANP protein) 65 9e-10
RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun... 63 3e-09
RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun... 63 3e-09
RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun... 63 3e-09
RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun... 62 1e-08
TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA)... 61 2e-08
RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun... 59 9e-08
SOK2_YEAST (P53438) SOK2 protein 58 1e-07
NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130... 57 3e-07
OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein) 56 4e-07
EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing... 55 9e-07
EWS_MOUSE (Q61545) RNA-binding protein EWS 53 4e-06
PAN1_YEAST (P32521) PAN1 protein 51 1e-05
SMF1_HUMAN (O14497) SWI/SNF-related, matrix-associated, actin-de... 51 2e-05
DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr... 51 2e-05
GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW21... 50 2e-05
FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein) 50 2e-05
XMS2_DROME (Q9U3V9) Xmas-2 protein 50 3e-05
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6)
Length = 1887
Score = 66.2 bits (160), Expect = 4e-10
Identities = 83/349 (23%), Positives = 126/349 (35%), Gaps = 47/349 (13%)
Query: 83 SVAGNSSNLGTANVPQDYNAYTSYPSSS-NPYGYGSAGYTGYYNNYQQQPNQTYSQPVGA 141
S A ++S + + P + S P S +PY S + Y+ PN T S P GA
Sbjct: 1537 SAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYS--PTSPNYTASSPGGA 1594
Query: 142 ---YQNTGAPYQPISSFQNTGSYAGSA---NYSSTYYNPAPADYQTTGVYQNSTGYANQA 195
Y + Y P S + YA + N ST Y+P+ + Y T + T +
Sbjct: 1595 SPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSS 1654
Query: 196 PPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTEN 255
P + + Y+ P Y+P S++ + S +P + Y+ T +P + +
Sbjct: 1655 PSFAGSGSNIYS--PGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPS 1712
Query: 256 LSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSGDHDGY 315
S TS PN P P Y + SA P + PA+ Y
Sbjct: 1713 YSPTS-----------------PNYTPVT--PSYSPTSPNYSASPQYSPAS------PAY 1747
Query: 316 WNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQ 375
G + S P P Y P SYD + + G+ Y P P P
Sbjct: 1748 SQTGVKYS------PTSPTYSPP---SPSYDGSPGSPQY--TPGSPQYSPASPKYSPTSP 1796
Query: 376 QVVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQPKIEKDSSTTNT 424
+ Q +PS T+PR + N++ P K S T+ T
Sbjct: 1797 LYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPT 1845
Score = 60.8 bits (146), Expect = 2e-08
Identities = 97/390 (24%), Positives = 138/390 (34%), Gaps = 51/390 (13%)
Query: 22 RHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQD---- 77
R+F P P + TPG + S + S + S P PG S+
Sbjct: 1516 RYFSP----PGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPA 1571
Query: 78 GQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYG-----YGSAGYTGYYNNYQQQPN 132
+VS +S TA+ P A +Y SS Y Y S Y N+ Q +
Sbjct: 1572 SPSVSPSYSPTSPNYTASSPG--GASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ-S 1628
Query: 133 QTYSQPVGAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQ-NSTGY 191
YS Y T Y P FQ++ S+AGS S Y+P A ++ Y NS Y
Sbjct: 1629 TGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGS---GSNIYSPGNAYSPSSSNYSPNSPSY 1685
Query: 192 ANQAPPWNNGSYSSYASHP------------HTNYTPDSNSSGAATTSVQYQ-QQQQNPW 238
+ +P ++ S S + P NYTP + S + TS Y Q +P
Sbjct: 1686 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPS--YSPTSPNYSASPQYSPA 1743
Query: 239 ADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASA 298
+ Y+QT V +P + S S S G P S TP S P + S
Sbjct: 1744 SPAYSQTGVKYSPTSPTYSPPSPSYDGSP----GSPQYTPGSPQYSPASPKYSPTS---- 1795
Query: 299 VPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKS-SYDNFQDQQKTVSS 357
P + P++ + Y G+ S P Y + + S S + T +
Sbjct: 1796 -PLYSPSSPQHSPSNQYSPTGSTYS------ATSPRYSPNMSIYSPSSTKYSPTSPTYTP 1848
Query: 358 QGTNLYLPPPPPLPPPPQQVVSTPIQSAPS 387
N P P P T +PS
Sbjct: 1849 TARNYSPTSPMYSPTAPSHYSPTSPAYSPS 1878
Score = 60.5 bits (145), Expect = 2e-08
Identities = 84/336 (25%), Positives = 131/336 (38%), Gaps = 33/336 (9%)
Query: 13 PAQPHQFENRHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQ--HPQP 70
P+ P + +F + PSY+PT+P A S ++ N S+P Y + P
Sbjct: 1558 PSSPGPSMSPYFPASPSVSPSYSPTSPNYTASS--PGGASPNYSPSSPNYSPTSPLYASP 1615
Query: 71 PGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQ 130
S N S + S+ G + Y+ + SS + G GS Y+ N
Sbjct: 1616 RYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSP--GNAYSP 1673
Query: 131 PNQTYSQPVGAYQNTGAPYQPIS-SFQNTGSYAG--SANYSST--YYNPAPADYQTTGV- 184
+ YS +Y T Y P S S+ T S +YS T Y P Y T
Sbjct: 1674 SSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPN 1733
Query: 185 YQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQ--QQQQNPWADYY 242
Y S Y+ +P ++ + P Y+P S S + S QY Q +P + Y
Sbjct: 1734 YSASPQYSPASPAYSQTGVKYSPTSP--TYSPPSPSYDGSPGSPQYTPGSPQYSPASPKY 1791
Query: 243 NQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSF 302
+ T +P + S ++ + G +ATS +PN Y P + S S P++
Sbjct: 1792 SPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN---MSIYSPSSTKYSPTS--PTY 1846
Query: 303 QPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQSP 338
P A N + TS ++ +P P++ SP
Sbjct: 1847 TPTARNY----------SPTSPMY--SPTAPSHYSP 1870
>MC3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)
Length = 1971
Score = 65.5 bits (158), Expect = 7e-10
Identities = 66/252 (26%), Positives = 108/252 (42%), Gaps = 39/252 (15%)
Query: 732 PDPATVRPEEVLEKAL--LMVQNSQKN-------YLYKCDQLKSIRQDLTVQRIRNQLTV 782
P P +RP VL + + L+ Q + Y + ++ + IR+D+T Q + + LTV
Sbjct: 679 PLPHELRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTV 738
Query: 783 KVYETHARF-----------AMEAGDLSEYNQ----CQSQLTALYAD----GIE-GSYME 822
+ E RF M + D N+ C L +Y D G+ S E
Sbjct: 739 SLIEKCTRFHIHCAHFMCEEPMSSFDAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAE 798
Query: 823 FAAYNLLCVIMHSNNNRDLLSSMTRLSDEAKKDEAVKHALAVRAAVTSGNYVAFFRLYKE 882
F YN+L + N D+L + + + + V A+ AA+ S N+V FF+L +
Sbjct: 799 FQGYNVLLNL----NKGDILREVQQFHPDVRNSPEVNFAVQAFAALNSNNFVRFFKLVQS 854
Query: 883 APNLNTCLMDLYVEKMRYKAVSCMCRSY-----RPTV-PVSYISHVLGFSTSAVANGGSD 936
A LN CL+ Y ++R A+ + +Y R TV P+ + +L F S A +
Sbjct: 855 ASYLNACLLHCYFNQIRKDALRALNVAYTVSTQRSTVFPLDGVVRMLLFRDSEEATNFLN 914
Query: 937 EKDTEAFEECLE 948
+ C+E
Sbjct: 915 YHGLTVADGCVE 926
>MC3A_HUMAN (O60318) 80 kda MCM3-associated protein (GANP protein)
Length = 1980
Score = 65.1 bits (157), Expect = 9e-10
Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 42/255 (16%)
Query: 732 PDPATVRPEEVLEKAL--LMVQNSQKN-------YLYKCDQLKSIRQDLTVQRIRNQLTV 782
P P +RP VL + + L+ Q + Y + ++ + IR+D+T Q + + LTV
Sbjct: 686 PLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTV 745
Query: 783 KVYETHARF-----------AMEAGDLSEYNQ----CQSQLTALYAD----GIE-GSYME 822
+ E RF M + D N+ C L +Y D G+ S E
Sbjct: 746 SLIEKCTRFHIHCAHFMCEEPMSSFDAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAE 805
Query: 823 FAAYNLLCVIMHSNNNRDLLSSMTRLSDEAKKDEAVKHALAVRAAVTSGNYVAFFRLYKE 882
F YN+L S N D+L + + + VK A+ AA+ S N+V FF+L +
Sbjct: 806 FQGYNVLL----SLNKGDILREVQQFHPAVRNSSEVKFAVQAFAALNSNNFVRFFKLVQS 861
Query: 883 APNLNTCLMDLYVEKMRYKAVSCMCRSYRPTVPVSYISHVLGFSTSAVANGGSDEKDTEA 942
A LN CL+ Y ++R A+ + +Y + S I + G +
Sbjct: 862 ASYLNACLLHCYFSQIRKDALRALNFAYTVSTQRSTIFPLDGVVRMLLFRD--------- 912
Query: 943 FEECLEWLKAHGASI 957
EE ++L HG ++
Sbjct: 913 CEEATDFLTCHGLTV 927
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1)
Length = 1970
Score = 63.2 bits (152), Expect = 3e-09
Identities = 105/425 (24%), Positives = 156/425 (36%), Gaps = 38/425 (8%)
Query: 24 FDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQ---HPQPPGRSIQDGQN 80
F PG + S P +PGS S S GG +P+Y P+ PG +
Sbjct: 1557 FSPGYSPAWSPTPGSPGSPGPSSPYIPSP--GGAMSPSYSPTSPAYEPRSPGGYTPQSPS 1614
Query: 81 VSSVAGNSSNLGTANVPQDYN---AYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQ 137
S + + S + P N SY +S Y S Y+ +Y + +YS
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSP 1673
Query: 138 PVGAYQNTGAPYQPIS-SFQNTG-SYAG-SANYSSTY--YNPAPADYQTTGVYQNSTG-- 190
+Y T Y P S S+ T SY+ S +YS T Y+P Y T + T
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1733
Query: 191 YANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCA 250
Y+ +P ++ S + + P NYTP S S + S P + Y+ T S +
Sbjct: 1734 YSPTSPSYSPTSPNYSPTSP--NYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 251 PGTENLSVTSSS-TFGGPIPAATSGYATPNSQPQQSYPPYWRQDSS--ASAVPSFQPAAI 307
P + + S TS S + P S TP+S P + S PS+ P++
Sbjct: 1792 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS- 1850
Query: 308 NSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPP 367
T + +P P Y SP K S + T T+ P
Sbjct: 1851 -----------PEYTPASPKYSPTSPKY-SPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 1898
Query: 368 PPL--PPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPR--IASNLTYGQPKIEKDSSTTN 423
P+ P P+ ++P S S S PT+P+ S + G S T+
Sbjct: 1899 SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTS 1958
Query: 424 TALKP 428
A+ P
Sbjct: 1959 PAISP 1963
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1)
Length = 1970
Score = 63.2 bits (152), Expect = 3e-09
Identities = 105/425 (24%), Positives = 156/425 (36%), Gaps = 38/425 (8%)
Query: 24 FDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQ---HPQPPGRSIQDGQN 80
F PG + S P +PGS S S GG +P+Y P+ PG +
Sbjct: 1557 FSPGYSPAWSPTPGSPGSPGPSSPYIPSP--GGAMSPSYSPTSPAYEPRSPGGYTPQSPS 1614
Query: 81 VSSVAGNSSNLGTANVPQDYN---AYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQ 137
S + + S + P N SY +S Y S Y+ +Y + +YS
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSP 1673
Query: 138 PVGAYQNTGAPYQPIS-SFQNTG-SYAG-SANYSSTY--YNPAPADYQTTGVYQNSTG-- 190
+Y T Y P S S+ T SY+ S +YS T Y+P Y T + T
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1733
Query: 191 YANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCA 250
Y+ +P ++ S + + P NYTP S S + S P + Y+ T S +
Sbjct: 1734 YSPTSPSYSPTSPNYSPTSP--NYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 251 PGTENLSVTSSS-TFGGPIPAATSGYATPNSQPQQSYPPYWRQDSS--ASAVPSFQPAAI 307
P + + S TS S + P S TP+S P + S PS+ P++
Sbjct: 1792 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS- 1850
Query: 308 NSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPP 367
T + +P P Y SP K S + T T+ P
Sbjct: 1851 -----------PEYTPTSPKYSPTSPKY-SPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 1898
Query: 368 PPL--PPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPR--IASNLTYGQPKIEKDSSTTN 423
P+ P P+ ++P S S S PT+P+ S + G S T+
Sbjct: 1899 SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTS 1958
Query: 424 TALKP 428
A+ P
Sbjct: 1959 PAISP 1963
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1) (Fragment)
Length = 467
Score = 63.2 bits (152), Expect = 3e-09
Identities = 105/425 (24%), Positives = 156/425 (36%), Gaps = 38/425 (8%)
Query: 24 FDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQ---HPQPPGRSIQDGQN 80
F PG + S P +PGS S S GG +P+Y P+ PG +
Sbjct: 54 FSPGYSPAWSPTPGSPGSPGPSSPYIPSP--GGAMSPSYSPTSPAYEPRSPGGYTPQSPS 111
Query: 81 VSSVAGNSSNLGTANVPQDYN---AYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQ 137
S + + S + P N SY +S Y S Y+ +Y + +YS
Sbjct: 112 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSP 170
Query: 138 PVGAYQNTGAPYQPIS-SFQNTG-SYAG-SANYSSTY--YNPAPADYQTTGVYQNSTG-- 190
+Y T Y P S S+ T SY+ S +YS T Y+P Y T + T
Sbjct: 171 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 230
Query: 191 YANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCA 250
Y+ +P ++ S + + P NYTP S S + S P + Y+ T S +
Sbjct: 231 YSPTSPSYSPTSPNYSPTSP--NYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 288
Query: 251 PGTENLSVTSSS-TFGGPIPAATSGYATPNSQPQQSYPPYWRQDSS--ASAVPSFQPAAI 307
P + + S TS S + P S TP+S P + S PS+ P++
Sbjct: 289 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS- 347
Query: 308 NSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPP 367
T + +P P Y SP K S + T T+ P
Sbjct: 348 -----------PEYTPTSPKYSPTSPKY-SPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 395
Query: 368 PPL--PPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPR--IASNLTYGQPKIEKDSSTTN 423
P+ P P+ ++P S S S PT+P+ S + G S T+
Sbjct: 396 SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTS 455
Query: 424 TALKP 428
A+ P
Sbjct: 456 PAISP 460
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6)
Length = 1852
Score = 61.6 bits (148), Expect = 1e-08
Identities = 74/278 (26%), Positives = 109/278 (38%), Gaps = 22/278 (7%)
Query: 32 PSYAPTTPGSQAVSWAVQSSTANGGYS--NPTYQYDQHPQPPGRSIQDGQNVSSVAGNSS 89
P Y+PT+P S A S + YS +P+Y P + S + S
Sbjct: 1587 PHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1646
Query: 90 NLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPY 149
T+ P + SY SS Y S Y+ Y + TYS Y T Y
Sbjct: 1647 YSPTS--PSYSPSSPSYSPSSPSYSPSSPRYSPTSPTY-SPTSPTYSPTSPTYSPTSPTY 1703
Query: 150 QPIS-SFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYAS 208
P S S+++ G Y+ SS Y+P+ Y T S Y+ +P ++ S S
Sbjct: 1704 SPTSPSYESGGGYSP----SSPKYSPSSPTYSPT-----SPSYSPTSPQYSPTSPQYSPS 1754
Query: 209 HPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPI 268
P YTP S + T+ + Q +P + Y+ T S P + S TS + P
Sbjct: 1755 SP--TYTPSSPTYN-PTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTY--TPS 1809
Query: 269 PAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAA 306
P+ G + S +Y P S AS PS+ P++
Sbjct: 1810 PSEQPGTSAQYSPTSPTYSPSSPTYSPAS--PSYSPSS 1845
Score = 48.9 bits (115), Expect = 7e-05
Identities = 93/397 (23%), Positives = 137/397 (34%), Gaps = 63/397 (15%)
Query: 21 NRHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQN 80
NR F P + P + TP +W S GG S PG N
Sbjct: 1494 NREFSPAHS--PWNSGVTPTYAGAAW----SPTTGGMS------------PGAGFSPAGN 1535
Query: 81 VSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSA---GYTGYYNNYQQQPNQTYSQ 137
A + G S S +P G S Y G + +S
Sbjct: 1536 TDGGASPFNEGGW-----------SPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSM 1584
Query: 138 PVGAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPP 197
Y T Y P S + S + +S Y+P Y T S Y+ +P
Sbjct: 1585 TSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPT-----SPSYSPTSPS 1639
Query: 198 WNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLS 257
++ S S + P +Y+P S S ++ S + +P + Y+ T + +P + S
Sbjct: 1640 YSPTSPSYSPTSP--SYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYS 1697
Query: 258 VTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSGDHDGYWN 317
T S T+ P+ SG S P+ Y P S S PS+ P +
Sbjct: 1698 PT-SPTYSPTSPSYESGGGYSPSSPK--YSPSSPTYSPTS--PSYSPTS----------P 1742
Query: 318 HGAQTSQIHQTNPIQPNY--QSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPP-LPPPP 374
+ TS Q +P P Y SP +S F Q + +S Y P P P P
Sbjct: 1743 QYSPTSP--QYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSP---TYSPTSPSYTPSSP 1797
Query: 375 QQVVSTPIQSAPSLDAKRVSKMQIPTNPRIA-SNLTY 410
Q ++P + + S PT+P + S+ TY
Sbjct: 1798 QYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1834
Score = 44.7 bits (104), Expect = 0.001
Identities = 70/332 (21%), Positives = 122/332 (36%), Gaps = 45/332 (13%)
Query: 122 GYYNNYQQQPNQTYSQPVGAYQNTGAP--------------YQPISSFQNTGSYAGSAN- 166
G+Y ++ P+ P + N+G P + F G+ G A+
Sbjct: 1483 GFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASP 1542
Query: 167 YSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYA-SHPH-----TNYTPDSNS 220
++ ++PA + + Y +P + S ++ + PH +Y+P S +
Sbjct: 1543 FNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPA 1602
Query: 221 SGAATTSVQYQ--QQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATP 278
+G + S Y +P + Y+ T S +P + + S TS S P + S +
Sbjct: 1603 AGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPSSPS 1660
Query: 279 NSQPQQSYPPYWRQDSSASAVPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQSP 338
S SY P + S S P++ P + ++ + T +P P+Y+S
Sbjct: 1661 YSPSSPSYSPSSPRYSPTS--PTYSPTSPTYSPTSPTYSPTSPTY-----SPTSPSYESG 1713
Query: 339 LDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQVVSTPIQSAPSLDAKRVSKMQI 398
S + T S + P P PQ S+P + PS S
Sbjct: 1714 GGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYT-PS------SPTYN 1766
Query: 399 PTNPRIASNLTYGQPKIEKDSSTTNTALKPAY 430
PT+PR S+ Y +S T + P+Y
Sbjct: 1767 PTSPRGFSSPQY------SPTSPTYSPTSPSY 1792
>TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA)
(Major surface antigen)
Length = 1162
Score = 60.8 bits (146), Expect = 2e-08
Identities = 100/427 (23%), Positives = 162/427 (37%), Gaps = 65/427 (15%)
Query: 36 PTTPGSQAVSWAVQSSTANGGYSNPTYQYDQ--HPQPPGRSIQDGQNVSSVAGNSSNLGT 93
P+TP + + + +S P+ D H P + + S +SS GT
Sbjct: 732 PSTPADSSAHSTPSTPADSSAHSTPSTPVDSSAHGTPSTPADSSAHSTPSTPADSSAHGT 791
Query: 94 ANVPQDYNAYT--SYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQP 151
+ P D +A++ S P S+ +G S + T S PV + + G P P
Sbjct: 792 PSTPVDSSAHSTPSTPVDSSAHGTPSTPV-------DSSAHSTPSTPVDSSAH-GTPSTP 843
Query: 152 I-SSFQNTGSYAGSANYSSTYYNPAPAD-YQTTGVYQNSTGYANQAPPWNNGSYSS---- 205
+ SS +T S ++ ST PA + + T +S+ ++ + P ++ ++S+
Sbjct: 844 VDSSAHSTPSTPADSSAHSTPSTPADSSAHGTPSTPVDSSAHSTPSTPADSSAHSTPSTP 903
Query: 206 --YASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSST 263
++H + DS++ G +T V S A GT + SS+
Sbjct: 904 VDSSAHSTPSTPADSSAHGTPSTPVD------------------SSAHGTPSTPADSSAH 945
Query: 264 FGGPIPAATSGYATPNSQPQQSY--PPYWRQDSSASAVPSFQPAAINSGDHDGYWNHGAQ 321
PA +S ++TP++ S P DSSA + PS PA +S H
Sbjct: 946 STPSTPADSSAHSTPSTPADSSAHSTPSTPVDSSAHSTPS-TPA--DSSAHSTPSTPADS 1002
Query: 322 TSQIHQTNPIQPNYQS----PLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQV 377
++ + P + S P+D SS + S+ GT P P
Sbjct: 1003 SAHSTPSTPADSSAHSTPSTPVD--SSAHSTPSTPADSSAHGT-----PSTPADSSAHST 1055
Query: 378 VSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQPKIEKDSSTTNTALKPAYLAVSLPK 437
STP+ S S P+ P A + +G P DSS +T PA +
Sbjct: 1056 PSTPVDS---------SAHSTPSTP--ADSSAHGTPSTPADSSAHSTPSTPADSSAHGTP 1104
Query: 438 STEKISS 444
ST SS
Sbjct: 1105 STPADSS 1111
Score = 53.9 bits (128), Expect = 2e-06
Identities = 99/410 (24%), Positives = 156/410 (37%), Gaps = 55/410 (13%)
Query: 48 VQSSTANGGYSNPTYQYDQ--HPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAY-- 103
+ SS+ + +S P+ D H P + S +SS GT + P D +A+
Sbjct: 588 MDSSSDSSAHSTPSTPADSSAHSTPSTPVDSSAHSTPSTPADSSAHGTPSTPVDSSAHGT 647
Query: 104 TSYPSSSNPYGYGSAGYTGYYNNYQQQP-----NQTYSQPVGAYQNTGAPYQPI-SSFQN 157
S P+ S+ +G S ++ P + T S PV + + GAP P SS
Sbjct: 648 PSTPADSSAHGTPSTPVDSSAHSTPSTPVDSSAHSTPSTPVDSSAH-GAPSTPADSSAHG 706
Query: 158 TGSYAGSANYSSTYYNPAPAD-YQTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTP 216
T S ++ T PA + + T +S+ ++ + P ++ ++S T TP
Sbjct: 707 TPSTPVDSSAHGTPSTPADSSAHSTPSTPADSSAHSTPSTPADSSAHS-------TPSTP 759
Query: 217 -DSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGY 275
DS++ G +T P + S A GT + V SS+ P +S +
Sbjct: 760 VDSSAHGTPSTPAD-SSAHSTP-----STPADSSAHGTPSTPVDSSAHSTPSTPVDSSAH 813
Query: 276 ATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNY 335
TP++ DSSA + PS ++S H G ++ + + P+
Sbjct: 814 GTPSTPV----------DSSAHSTPS---TPVDSSAH------GTPSTPVDSSAHSTPS- 853
Query: 336 QSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQVVSTPIQS-APSLDAKRVS 394
+P D SS + S+ GT P P+ STP S A S + V
Sbjct: 854 -TPAD--SSAHSTPSTPADSSAHGT-----PSTPVDSSAHSTPSTPADSSAHSTPSTPVD 905
Query: 395 KMQIPTNPRIASNLTYGQPKIEKDSSTTNTALKPAYLAVSLPKSTEKISS 444
T A + +G P DSS T PA + ST SS
Sbjct: 906 SSAHSTPSTPADSSAHGTPSTPVDSSAHGTPSTPADSSAHSTPSTPADSS 955
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6)
Length = 1840
Score = 58.5 bits (140), Expect = 9e-08
Identities = 74/289 (25%), Positives = 109/289 (37%), Gaps = 35/289 (12%)
Query: 32 PSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSSNL 91
P Y+PT+PG S ++ ++PTY P PG S S +S
Sbjct: 1550 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS----PSSPGYS-----PTSPAYSPTSPS 1600
Query: 92 GTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQP 151
+ P SY +S Y S Y+ +Y + YS AY T Y P
Sbjct: 1601 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYSPTSPAYSP 1659
Query: 152 IS-SFQNTGSYAGSANYSST--YYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYAS 208
S S+ T S +YS T Y+P Y T S Y+ +P ++ S +
Sbjct: 1660 TSPSYSPT-----SPSYSPTSPSYSPTSPSYSPT-----SPSYSPTSPAYSPTSPGYSPT 1709
Query: 209 HPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPI 268
P +Y+P S S G + S Q + +P ++ +P LS S + P
Sbjct: 1710 SP--SYSPTSPSYGPTSPSYNPQSAKYSP--------SIAYSPSNARLSPASPYSPTSPN 1759
Query: 269 PAATSGYATPNSQPQQSYPPYWRQDS--SASAVPSFQPAAINSGDHDGY 315
+ TS +P S P + S S+ A P + P+A S GY
Sbjct: 1760 YSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGY 1808
Score = 52.8 bits (125), Expect = 5e-06
Identities = 60/231 (25%), Positives = 86/231 (36%), Gaps = 11/231 (4%)
Query: 107 PSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQPISSFQNTGSYAGSAN 166
PSSS Y S GY+ Y + YS Y T Y P S + S A S
Sbjct: 1539 PSSSPGYSPSSPGYSPTSPGYSPT-SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP- 1596
Query: 167 YSSTYYNPAPADYQTTGVYQNSTG--YANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAA 224
+S Y+P Y T + T Y+ +P ++ S S + P Y+P S +
Sbjct: 1597 -TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA--YSPTSPAYSPT 1653
Query: 225 TTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQ 284
+ + +P + Y+ T S +P + + S TS S P A S + S
Sbjct: 1654 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPAYSPTSPGYSPTSP 1711
Query: 285 SYPPYWRQDSSASAVPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNY 335
SY P S PS+ P + Y A+ S +P PNY
Sbjct: 1712 SYSP--TSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNY 1760
Score = 44.3 bits (103), Expect = 0.002
Identities = 46/182 (25%), Positives = 75/182 (40%), Gaps = 14/182 (7%)
Query: 32 PSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRS-IQDGQNVSSVAGNSSN 90
P+Y+PT+P S + ++ + ++P+Y P P S + +S A + ++
Sbjct: 1648 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPAYSPTS 1703
Query: 91 LGTANVPQDYNAYT-SYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPY 149
G + Y+ + SY +S Y SA Y+ + P+ P Y T Y
Sbjct: 1704 PGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSP---SIAYSPSNARLSPASPYSPTSPNY 1760
Query: 150 QPIS-SFQNTG-SYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYA 207
P S S+ T SY+ S S TY +P + Y S GY+ P ++ S Y
Sbjct: 1761 SPTSPSYSPTSPSYSPS---SPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPSSTGQYT 1817
Query: 208 SH 209
H
Sbjct: 1818 PH 1819
Score = 35.8 bits (81), Expect = 0.59
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 38/161 (23%)
Query: 32 PSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSSNL 91
P+Y+PT+PG S + ++ + G ++P+Y + Q + S+A + SN
Sbjct: 1697 PAYSPTSPGYSPTSPSYSPTSPSYGPTSPSY-----------NPQSAKYSPSIAYSPSN- 1744
Query: 92 GTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQP 151
+ S ++PY S Y+ + +YS +Y + Y P
Sbjct: 1745 -------------ARLSPASPYSPTSPNYS--------PTSPSYSPTSPSYSPSSPTYSP 1783
Query: 152 ISSFQNTGS--YAGSANYSSTYYNPAPADYQTTGVYQNSTG 190
S + + S Y+ SA YS T +P+ +TG Y G
Sbjct: 1784 SSPYSSGASPDYSPSAGYSPTLPGYSPS---STGQYTPHEG 1821
>SOK2_YEAST (P53438) SOK2 protein
Length = 785
Score = 58.2 bits (139), Expect = 1e-07
Identities = 125/546 (22%), Positives = 192/546 (34%), Gaps = 103/546 (18%)
Query: 80 NVSSVAGNSSNLGTANVPQD----YNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTY 135
N+S+V+ + S +G + Q Y + P Y Y Y YQQ +Q+
Sbjct: 22 NMSAVSNSESTIGQSTQQQQQQQQYLGQSVQPLMPVSYQYVVPEQWPYPQYYQQPQSQSQ 81
Query: 136 SQPVGAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYN-PAPADYQ--------TTGVYQ 186
Q Q+ YQ SFQ++GS + ++N ST P+ A TT
Sbjct: 82 QQ----LQSQPQMYQVQESFQSSGSDSNASNPPSTSVGVPSNATATALPNGSAITTKKSN 137
Query: 187 NSTGYANQAP-----PWNNGSYSSYASHPHTNYTPDSNSSGAA----------------- 224
NST +N P P S S+P Y +N G
Sbjct: 138 NSTNISNNVPYYYYFPQMQAQQSMAYSYPQAYYYYPANGDGTTNGATPSVTSNQVQNPNL 197
Query: 225 --TTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQP 282
T S QQQQ QT + P N S + GP ++SG +PNS
Sbjct: 198 EKTYSTFEQQQQHQQQQQLQAQTYPAQPPKIGN--AFSKFSKSGPPSDSSSGSMSPNSNR 255
Query: 283 QQSYPPYWRQDSSASAVPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLK 342
R +S S++ QP N Y Q H+T+ I PN SP+ +
Sbjct: 256 TS------RNSNSISSLAQ-QPPMSNYPQPSTY-----QYPGFHKTSSI-PNSHSPIPPR 302
Query: 343 SSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQVVSTPIQS----APSLDAKRVSKMQI 398
S Q S G Y P L PP QQ +P+ P + + +
Sbjct: 303 SL---TTPTQGPTSQNGPLSYNLPQVGLLPPQQQQQVSPLYDGNSITPPVKPSTDQETYL 359
Query: 399 PTNPRIASNLTYGQPKIEKDSSTTNTALKPAYLAVSLPKSTEKISSNDAANSILKPGMFP 458
N S+ Y +S T T P L + + S A SI++P
Sbjct: 360 TANRHGVSDQQYDSMAKTMNSFQTTTIRHPMPLIATTNATGSNTSGTSA--SIIRP---- 413
Query: 459 KSLRGYVERALTRCKDDKQMKACQAVMKEMITKATADGTLCTRNWDMEPLFPMPDSDVVN 518
R T +D+ K + + A+G R D+D+VN
Sbjct: 414 --------RVTTTMWEDE---------KTLCYQVEANGISVVRR---------ADNDMVN 447
Query: 519 KDSVLSSTHKRSPRRSKSRWEPLPEEKPVDNPVSISNDTVKYSAWVPNVKDRKVVMENKE 578
+L+ T + ++ R + + + + + + V I + +K W+P +R + + +E
Sbjct: 448 GTKLLNVT-----KMTRGRRDGILKAEKIRHVVKIGSMHLK-GVWIP--FERALAIAQRE 499
Query: 579 SKEDDL 584
D L
Sbjct: 500 KIADYL 505
Score = 42.0 bits (97), Expect = 0.008
Identities = 81/349 (23%), Positives = 122/349 (34%), Gaps = 56/349 (16%)
Query: 5 GTNTETLVPAQ-----PHQFEN-RHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYS 58
G + + L+P P Q+ +++ Q+Q + P V + QSS ++ S
Sbjct: 48 GQSVQPLMPVSYQYVVPEQWPYPQYYQQPQSQSQQQLQSQPQMYQVQESFQSSGSDSNAS 107
Query: 59 NPTYQYDQHPQ-PPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGS 117
NP P ++ +G +++ N+S + NVP Y S Y Y
Sbjct: 108 NPPSTSVGVPSNATATALPNGSAITTKKSNNSTNISNNVPYYYYFPQMQAQQSMAYSYPQ 167
Query: 118 AGYTGYY----------------NNYQQQPN--QTYS--------QPVGAYQNTGAPYQP 151
A Y YY +N Q PN +TYS Q Q P QP
Sbjct: 168 AYY--YYPANGDGTTNGATPSVTSNQVQNPNLEKTYSTFEQQQQHQQQQQLQAQTYPAQP 225
Query: 152 ISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHP- 210
++ S S + + T NS Q PP +N S +P
Sbjct: 226 PKIGNAFSKFSKSGPPSDSSSGSMSPNSNRTSRNSNSISSLAQQPPMSNYPQPSTYQYPG 285
Query: 211 --HTNYTPDSNS---SGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVT---SSS 262
T+ P+S+S + TT Q Q P + YN +V P + V+ +
Sbjct: 286 FHKTSSIPNSHSPIPPRSLTTPTQGPTSQNGPLS--YNLPQVGLLPPQQQQQVSPLYDGN 343
Query: 263 TFGGPIPAAT--SGYATPNSQ--PQQSYPPYWRQDSSASAVPSFQPAAI 307
+ P+ +T Y T N Q Y DS A + SFQ I
Sbjct: 344 SITPPVKPSTDQETYLTANRHGVSDQQY------DSMAKTMNSFQTTTI 386
>NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130
kDa protein) (140 kDa nucleolar phosphoprotein)
(Nopp140) (Nucleolar and coiled-body phosphoprotein 1)
Length = 699
Score = 56.6 bits (135), Expect = 3e-07
Identities = 80/351 (22%), Positives = 134/351 (37%), Gaps = 42/351 (11%)
Query: 333 PNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPP--------------PQQVV 378
P +S SS D ++Q+K + ++ PPP PPP QQ V
Sbjct: 260 PTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSYAPPPSAPPPKKSLGTQPPKKAVEKQQPV 319
Query: 379 STPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQP---KIEKDSSTTNTALKPAYLAVSL 435
+ S+ D+ + + PT ++ T P E S ++++ A S
Sbjct: 320 ESSEDSSDESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPSK 379
Query: 436 PKSTEKISSNDAA----NSILKPGMFPKSLRGYVERALTRCKDDKQMKACQAVMKEMITK 491
P T K SSN A + +KP PK G ++ LTR D + + +E TK
Sbjct: 380 PAGTTKNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEKTK 439
Query: 492 ---ATADGTLCTRNWDMEPLFPMPD-SDVVNKDSVLSSTHKRSPRRSKSRWEPLPEEKPV 547
AT + P P S + DS SS+ + + SKS + P++ V
Sbjct: 440 KMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQK--V 497
Query: 548 DNPVSISNDTVKYSAWVPNVKDRKVVMENKESKEDDLRNTKFSPFIQRTSSKAPQRPFKK 607
+ S + K K N S +D + ++ K RP
Sbjct: 498 AGGAAPSKPA--------SAKKGKAESSNSSSSDDSSEEEE-----EKLKGKGSPRPQAP 544
Query: 608 QRLTDASIAHENGDASSGSDKEQSLTAYYSAAMAFSDTPEEKKRRENRSKR 658
+ +++ +NG A+ S++E+ AA+ S + KKR++N + +
Sbjct: 545 KANGTSALTAQNGKAAKNSEEEEE--EKKKAAVVVSKSGSLKKRKQNEAAK 593
>OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein)
Length = 2716
Score = 56.2 bits (134), Expect = 4e-07
Identities = 86/336 (25%), Positives = 109/336 (31%), Gaps = 53/336 (15%)
Query: 11 LVPAQPHQFENRHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQ-HPQ 69
L PA PH H P Q QPP P + S++ G +P+ Q Q P
Sbjct: 425 LPPASPH-----HVPPLQQQPP------PPPHVSAGGPPPSSSPGHAPSPSPQPSQASPS 473
Query: 70 PPGRSIQDGQNVSSVAGNSSNLGTA--NVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNY 127
P I N SS G S +G+ P PS + G S N+
Sbjct: 474 PHQELIGQNSNDSSSGGAHSGMGSGPPGTPNPQQVMRPTPSPTGSSGSRSMSPAVAQNHP 533
Query: 128 QQQPNQTYSQPVGAYQNT-----------------GAPYQPISSFQNTGSYAGSANYSST 170
+P S G Q G P Q S Q S + S+ +S
Sbjct: 534 ISRPASNQSSSGGPMQQPPVGAGGPPPMPPHPGMPGGPPQQQQSQQQQASNSASSASNSP 593
Query: 171 YYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQY 230
P PA G+ A PP + Y PH + G + + Y
Sbjct: 594 QQTPPPAPPPNQGM----NNMATPPPPPQGAAGGGYPMPPHMHGGYKMGGPGQSPGAQGY 649
Query: 231 --QQQQQNPWADYYNQTEVSCAPGTENLS----VTSSSTFGG----PIPAATSGY---AT 277
QQ QQ P +Y + + PG TS + GG P A GY
Sbjct: 650 PPQQPQQYPPGNYPPRPQY--PPGAYATGPPPPPTSQAGAGGANSMPSGAQAGGYPGRGM 707
Query: 278 PNSQPQQSYPPY-WRQDSSASAVPSFQPAAINSGDH 312
PN Q YPPY W S VP P G+H
Sbjct: 708 PNHTGQ--YPPYQWVPPSPQQTVPGGAPGGAMVGNH 741
Score = 56.2 bits (134), Expect = 4e-07
Identities = 99/427 (23%), Positives = 132/427 (30%), Gaps = 48/427 (11%)
Query: 15 QPHQFENRHFDPGQ----NQPPS--YAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHP 68
QPH + PG N+PP Y P P ++ P ++Y
Sbjct: 177 QPHPQQQPPQQPGPGGSPNRPPQQRYIPGQPPQGPTPTLNSLLQSSNPPPPPQHRYANTY 236
Query: 69 QPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQ 128
P Q ++ A + P + +PYG G+ Y
Sbjct: 237 DP-----QQAAASAAAAAAAQQQQAGGPPPPGHGPPPPQHQPSPYGGQQGGWAPPPRPYS 291
Query: 129 QQ--PNQTYSQPVGAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYNPAP--ADYQTTGV 184
Q P+Q Y P + G P + QN+GSY S A Q G
Sbjct: 292 PQLGPSQQYRTPPPTNTSRGQSPYPPAHGQNSGSYPSSPQQQQQQQQQQQQQAGQQPGGP 351
Query: 185 YQNST--GYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQ----QNPW 238
G Q P N S Y+ +P TP +G + Y Q PW
Sbjct: 352 VPGGPPPGTGQQPPQQNTPPTSQYSPYPQRYPTPPGLPAGGSNHRTAYSTHQYPEPNRPW 411
Query: 239 ADYYNQTEVSC--APGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSA 296
+ + S P V P P ++G P+S P + P Q S A
Sbjct: 412 PGGSSPSPGSGHPLPPASPHHVPPLQQQPPPPPHVSAGGPPPSSSPGHAPSPS-PQPSQA 470
Query: 297 SAVPSFQPAAINSGDHDGYWNHGAQTSQIHQT-NPIQPNYQSPLDLKSSYDNFQDQQ--- 352
S P + NS D H S T NP Q +P SS
Sbjct: 471 SPSPHQELIGQNSNDSSSGGAHSGMGSGPPGTPNPQQVMRPTPSPTGSSGSRSMSPAVAQ 530
Query: 353 --------KTVSSQGTNLYLPP-----PPPLPP-------PPQQVVSTPIQSAPSLDAKR 392
SS G + PP PPP+PP PPQQ S Q++ S +
Sbjct: 531 NHPISRPASNQSSSGGPMQQPPVGAGGPPPMPPHPGMPGGPPQQQQSQQQQASNSASSAS 590
Query: 393 VSKMQIP 399
S Q P
Sbjct: 591 NSPQQTP 597
Score = 50.4 bits (119), Expect = 2e-05
Identities = 87/382 (22%), Positives = 117/382 (29%), Gaps = 95/382 (24%)
Query: 26 PGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQN----V 81
P + PP ++P T QA Q +P +Q+ P PP Q GQ
Sbjct: 1256 PQPHPPPPHSPHTAAQQAAGQHQQQ--------HPQHQHPGLPGPPPPQQQQGQQGQQPP 1307
Query: 82 SSVAGN----SSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQ 137
SV G G VP + P++ PY G +GY + P Y
Sbjct: 1308 PSVGGGPPPAPQQHGPGQVPPSPQQHVR-PAAGAPYPPGGSGYP---TPVSRTPGSPYPS 1363
Query: 138 PVGAYQNTGAPYQPISSFQNTGSYAGSANYSST-----YYNPAPADY--QTTGVYQNSTG 190
GAY G Y S Y++T + P Y Q +Y G
Sbjct: 1364 QPGAY----------------GQYGSSDQYNATGPPGQPFGQGPGQYPPQNRNMYP-PYG 1406
Query: 191 YANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCA 250
+APP Y Y S P++ P
Sbjct: 1407 PEGEAPPTGANQYGPYGSRPYSQPPPG--------------------------------G 1434
Query: 251 PGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAI-NS 309
P +V GG P A A P +P Q Y++ S P P I +S
Sbjct: 1435 PQPPTQTVAGGPPAGG-APGAPPSSAYPTGRPSQQ--DYYQPPPDQSPQPRRHPDFIKDS 1491
Query: 310 GDHDGY----WNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQD-----------QQKT 354
+ GY +GA S Q P P+ +P + + QQ
Sbjct: 1492 QPYPGYNARPQIYGAWQSGTQQYRPQYPSSPAPQNWGGAPPRGAAPPPGAPHGPPIQQPA 1551
Query: 355 VSSQGTNLYLPPPPPLPPPPQQ 376
+Q PP PPPPQQ
Sbjct: 1552 GVAQWDQHRYPPQQGPPPPPQQ 1573
Score = 49.7 bits (117), Expect = 4e-05
Identities = 100/431 (23%), Positives = 137/431 (31%), Gaps = 95/431 (22%)
Query: 12 VPAQPHQFENRHFDP---GQNQPPS----YAPTTPGSQAVSWAVQSSTANGGYSNPTYQY 64
+P QP Q + N PP YA T QA + A ++ A Q
Sbjct: 203 IPGQPPQGPTPTLNSLLQSSNPPPPPQHRYANTYDPQQAAASAAAAAAAQ-------QQQ 255
Query: 65 DQHPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAY------------TSYPSSSNP 112
P PPG Q+ S G G A P+ Y+ T+ +P
Sbjct: 256 AGGPPPPGHGPPPPQHQPSPYGGQQG-GWAPPPRPYSPQLGPSQQYRTPPPTNTSRGQSP 314
Query: 113 YGYGSAGYTGYY-NNYQQQPNQTYSQPVGAYQNTGAPYQPISSFQNTGSYAGSANYSST- 170
Y +G Y ++ QQQ Q Q A Q G P P TG N T
Sbjct: 315 YPPAHGQNSGSYPSSPQQQQQQQQQQQQQAGQQPGGPV-PGGPPPGTGQQPPQQNTPPTS 373
Query: 171 YYNPAPADYQT-----TGVYQNSTGYA-NQAP----PWNNGSYSSYAS------------ 208
Y+P P Y T G + T Y+ +Q P PW GS S S
Sbjct: 374 QYSPYPQRYPTPPGLPAGGSNHRTAYSTHQYPEPNRPWPGGSSPSPGSGHPLPPASPHHV 433
Query: 209 -----------HPHTNYTPDSNSSG-AATTSVQYQQQQQNPWADYYNQTEVSCA------ 250
H P S+S G A + S Q Q +P + Q +
Sbjct: 434 PPLQQQPPPPPHVSAGGPPPSSSPGHAPSPSPQPSQASPSPHQELIGQNSNDSSSGGAHS 493
Query: 251 ------PGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQP 304
PGT N T P P +SG + + Q++P + +S+ Q
Sbjct: 494 GMGSGPPGTPNPQQVMRPT---PSPTGSSGSRSMSPAVAQNHPISRPASNQSSSGGPMQQ 550
Query: 305 AAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYL 364
+ +G P+ P+ P + Q Q +S +N
Sbjct: 551 PPVGAGGPP----------------PMPPHPGMPGGPPQQQQSQQQQASNSASSASNSPQ 594
Query: 365 PPPPPLPPPPQ 375
PPP PPP Q
Sbjct: 595 QTPPPAPPPNQ 605
Score = 40.8 bits (94), Expect = 0.018
Identities = 87/403 (21%), Positives = 111/403 (26%), Gaps = 71/403 (17%)
Query: 13 PAQPHQFENRHFDPGQNQP-------PSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYD 65
P P+ N DP Q P AP PGS A Y + Q
Sbjct: 42 PPTPNNNSNNGSDPSIQQQQQNVAPHPYGAPPPPGSGPGGPPGPDPAAVMHYHHLHQQQQ 101
Query: 66 QHPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYN 125
QHP PP +Q Q+ A + P YT P YG
Sbjct: 102 QHPPPP--HMQQQQHHGGPAPPPPGGAPEHAPGVKEEYTHLPPPHPHPAYG--------- 150
Query: 126 NYQQQPNQTYSQPVGAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVY 185
Y PN PY+ Y P P
Sbjct: 151 RYHADPNMD-------------PYR--------------------YGQPLPGGKPP---- 173
Query: 186 QNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNP------WA 239
Q + Q PP G S P Y P G T Q P +A
Sbjct: 174 QQQQPHPQQQPPQQPGPGGSPNRPPQQRYIPGQPPQGPTPTLNSLLQSSNPPPPPQHRYA 233
Query: 240 DYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAV 299
+ Y+ + + + + GGP P G+ P Q Q S PY Q +
Sbjct: 234 NTYDPQQAAASAAAA--AAAQQQQAGGPPPP---GHGPPPPQHQPS--PYGGQQGGWAPP 286
Query: 300 PSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQG 359
P +P + G Y T+ +P P + S Q QQ+ Q
Sbjct: 287 P--RPYSPQLGPSQQY-RTPPPTNTSRGQSPYPPAHGQNSGSYPSSPQQQQQQQQQQQQQ 343
Query: 360 TNLYLPPPPPLPPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNP 402
P P PPP P Q+ P + PT P
Sbjct: 344 AGQQPGGPVPGGPPPGTGQQPPQQNTPPTSQYSPYPQRYPTPP 386
Score = 32.7 bits (73), Expect = 5.0
Identities = 33/114 (28%), Positives = 44/114 (37%), Gaps = 12/114 (10%)
Query: 192 ANQAPPWNNGSYSSYASHPHTNY-TPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCA 250
A A P + G+ A+ P + TP++NS+ + S+Q QQQ P Y
Sbjct: 20 APAATPPSAGAAPGAATPPTSGPPTPNNNSNNGSDPSIQQQQQNVAP-HPYGAPPPPGSG 78
Query: 251 PGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQP 304
PG GP PAA Y + Q QQ PP Q P+ P
Sbjct: 79 PGGP----------PGPDPAAVMHYHHLHQQQQQHPPPPHMQQQQHHGGPAPPP 122
Score = 32.3 bits (72), Expect = 6.5
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 26 PGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQP-PGRSIQDGQNVSSV 84
PG P YA P SQ V V G P Q P P PG+++Q Q +
Sbjct: 1675 PGGMVKPPYAMPPPPSQGVGQQV-------GQGPPGGMMSQKPPPMPGQAMQQ-QPLQQQ 1726
Query: 85 AGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTG 122
+ + PQ + + P+ + P GYG G G
Sbjct: 1727 PPSHQHPHPHQHPQHQHPHQMPPNQTAPGGYGPPGMPG 1764
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing
sarcoma breakpoint region 1 protein)
Length = 656
Score = 55.1 bits (131), Expect = 9e-07
Identities = 47/196 (23%), Positives = 75/196 (37%), Gaps = 8/196 (4%)
Query: 6 TNTETLVPAQPHQFENRHFDPGQNQPPSYAPTTP--GSQAVSWAVQSSTANGGYSNPTYQ 63
T T+ AQ + QP + APT P G++ + Q ++ GGY+ P+
Sbjct: 106 TTTQASYAAQSAYGTQPAYPAYGQQPAATAPTRPQDGNKPTETS-QPQSSTGGYNQPSLG 164
Query: 64 YDQ----HPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAG 119
Y Q +PQ PG +S T D ++Y+ + P YG
Sbjct: 165 YGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQS 224
Query: 120 YTGYYNNYQQQPNQTYSQPVGAYQNTGAPY-QPISSFQNTGSYAGSANYSSTYYNPAPAD 178
G ++Y QQP +Y G+Y + Y Q SS+ S+ S Y
Sbjct: 225 SYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGG 284
Query: 179 YQTTGVYQNSTGYANQ 194
+ G ++ +G N+
Sbjct: 285 FSGPGENRSMSGPDNR 300
Score = 50.1 bits (118), Expect = 3e-05
Identities = 61/211 (28%), Positives = 77/211 (35%), Gaps = 26/211 (12%)
Query: 30 QPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSS 89
QPP+ T QA S VQ G Y T G + A
Sbjct: 72 QPPTGYTTPTAPQAYSQPVQGY-GTGAYDTTTATVTTTQASYAAQSAYGTQPAYPAYGQQ 130
Query: 90 NLGTANV-PQDYN--AYTSYP-SSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNT 145
TA PQD N TS P SS+ Y S GY +Y Q P QPV T
Sbjct: 131 PAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPV-----T 185
Query: 146 GAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSS 205
P P +S+ +T T Y+ + Q T Y + Y Q+ + G SS
Sbjct: 186 APPSYPPTSYSST---------QPTSYDQSSYSQQNT--YGQPSSYGQQS---SYGQQSS 231
Query: 206 YASHPHTNYTPDSNSSGAATTSVQYQQQQQN 236
Y P T+Y P + S A + QY QQ +
Sbjct: 232 YGQQPPTSYPPQTGSYSQAPS--QYSQQSSS 260
Score = 48.1 bits (113), Expect = 1e-04
Identities = 73/283 (25%), Positives = 99/283 (34%), Gaps = 52/283 (18%)
Query: 115 YGSAGYTGYYNNYQQQPNQTYSQPVGAY--QNTGAPYQP----ISSFQNTGSYAGSANYS 168
Y A Y+ Y QP Q Y+Q AY Q+ G QP + Q T +Y G Y+
Sbjct: 9 YSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATY-GQTAYA 67
Query: 169 STYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSV 228
++Y P P Y T Q Y+ + G+Y D+ ++ TT
Sbjct: 68 TSYGQP-PTGYTTPTAPQ---AYSQPVQGYGTGAY-------------DTTTATVTTTQA 110
Query: 229 QYQQQQ---QNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPN---SQP 282
Y Q P Y Q + AP + T ++T GY P+ Q
Sbjct: 111 SYAAQSAYGTQPAYPAYGQQPAATAPTRPQDGNKPTET--SQPQSSTGGYNQPSLGYGQS 168
Query: 283 QQSYP--PYWRQDSSASAVPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLD 340
SYP P +A PS+ P + +S Y Q+S Q QP S
Sbjct: 169 NYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSY----DQSSYSQQNTYGQP---SSYG 221
Query: 341 LKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQVVSTPIQ 383
+SSY QQ + Q PP PP P Q
Sbjct: 222 QQSSY----GQQSSYGQQ-------PPTSYPPQTGSYSQAPSQ 253
Score = 46.6 bits (109), Expect = 3e-04
Identities = 77/289 (26%), Positives = 99/289 (33%), Gaps = 65/289 (22%)
Query: 51 STANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSS 110
+ A GYS T Q Q G ++ A + GT P D SY +
Sbjct: 12 AAAQQGYSAYTAQPTQ-----------GYAQTTQAYGQQSYGTYGQPTD----VSYTQAQ 56
Query: 111 NPYGYGSAGYTGYYNNYQQQPN--------QTYSQPVGAYQNTGAPYQPISSFQNT-GSY 161
YG T Y +Y Q P Q YSQPV Y TGA ++ T SY
Sbjct: 57 TTATYGQ---TAYATSYGQPPTGYTTPTAPQAYSQPVQGY-GTGAYDTTTATVTTTQASY 112
Query: 162 AGSANYSSTYYNPA------------PAD-----------YQTTGVYQNSTGY--ANQAP 196
A + Y + PA P D T G Q S GY +N +
Sbjct: 113 AAQSAYGTQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSY 172
Query: 197 PWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENL 256
P GSY +Y P S SS T+ Q QQN + + + S
Sbjct: 173 PQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQS-------- 224
Query: 257 SVTSSSTFGGPIPAA----TSGYATPNSQPQQSYPPYWRQDSSASAVPS 301
S S++G P + T Y+ SQ Q Y +Q S PS
Sbjct: 225 SYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPS 273
Score = 40.4 bits (93), Expect = 0.024
Identities = 61/238 (25%), Positives = 86/238 (35%), Gaps = 35/238 (14%)
Query: 188 STGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEV 247
ST Y+ + YS+Y + P + G A T+ Y QQ + Y T+V
Sbjct: 3 STDYSTYSQAAAQQGYSAYTAQP---------TQGYAQTTQAYGQQS---YGTYGQPTDV 50
Query: 248 SC--APGTENLSVTSSSTFGGPIPAATSGYATPN-----SQPQQSYPPYWRQDSSASAVP 300
S A T T+ +T G P +GY TP SQP Q Y ++A+
Sbjct: 51 SYTQAQTTATYGQTAYATSYGQPP---TGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTT 107
Query: 301 SFQPAAINS--GDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQ 358
+ A S G Y +G Q + T P N P + + +
Sbjct: 108 TQASYAAQSAYGTQPAYPAYGQQPAATAPTRPQDGN--KPTETSQPQSSTGGYNQPSLGY 165
Query: 359 GTNLYLPPPPPLPPPPQQVVSTPIQSAPSLDAKRVSKMQIPTN---PRIASNLTYGQP 413
G + Y P P P Q P+ + PS S Q PT+ + TYGQP
Sbjct: 166 GQSNYSYPQVPGSYPMQ-----PVTAPPSYPPTSYSSTQ-PTSYDQSSYSQQNTYGQP 217
Score = 36.6 bits (83), Expect = 0.35
Identities = 56/245 (22%), Positives = 82/245 (32%), Gaps = 46/245 (18%)
Query: 169 STYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSV 228
STY A + Q + GYA + SY +Y +YT ++ T+
Sbjct: 7 STYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATYGQTA- 65
Query: 229 QYQQQQQNPWADY--------YNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNS 280
Y P Y Y+Q G + + T++ T AA S Y T
Sbjct: 66 -YATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYD-TTTATVTTTQASYAAQSAYGT--- 120
Query: 281 QPQQSYPPYWRQDSSAS---------AVPSFQPAAINSGDHD---GYWNHGAQTSQIHQT 328
Q +YP Y +Q ++ + + QP + G + GY Q+ +
Sbjct: 121 --QPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGS 178
Query: 329 NPIQPNYQSPLDLKSSYDNFQ---------DQQKTV---------SSQGTNLYLPPPPPL 370
P+QP P +SY + Q QQ T SS G PP
Sbjct: 179 YPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPT 238
Query: 371 PPPPQ 375
PPQ
Sbjct: 239 SYPPQ 243
Score = 33.9 bits (76), Expect = 2.2
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 31 PPSYAPTTPGS-QAVSWAVQSSTANGGYSNPTY--------QYDQHPQPPGRSIQDGQNV 81
PPSY PT+ S Q S+ S + Y P+ Q + Q P S
Sbjct: 187 PPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGS 246
Query: 82 SSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGA 141
S A + + +++ Q + +PSS YG S G++G N + G
Sbjct: 247 YSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRGG 306
Query: 142 YQNTG 146
+ G
Sbjct: 307 FDRGG 311
>EWS_MOUSE (Q61545) RNA-binding protein EWS
Length = 655
Score = 53.1 bits (126), Expect = 4e-06
Identities = 49/197 (24%), Positives = 74/197 (36%), Gaps = 10/197 (5%)
Query: 6 TNTETLVPAQPHQFENRHFDPGQNQPPSYAPTTP---GSQAVSWAVQSSTANGGYSNPTY 62
T T+ AQ + QP + APT P A + QSST GGY+ P+
Sbjct: 106 TTTQASYAAQSAYGTQPAYPTYGQQPTATAPTRPQDGNKPAETSQPQSST--GGYNQPSL 163
Query: 63 QYDQ----HPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSA 118
Y Q +PQ PG +S + D ++Y+ + P YG
Sbjct: 164 GYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSSQPTSYDQSSYSQQNTYGQPSSYGQQ 223
Query: 119 GYTGYYNNYQQQPNQTYSQPVGAYQNTGAPY-QPISSFQNTGSYAGSANYSSTYYNPAPA 177
G ++Y QQP +Y G+Y + Y Q SS+ S+ S Y
Sbjct: 224 SSYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESG 283
Query: 178 DYQTTGVYQNSTGYANQ 194
+ G ++ +G N+
Sbjct: 284 GFSGPGENRSLSGPDNR 300
Score = 50.4 bits (119), Expect = 2e-05
Identities = 74/283 (26%), Positives = 99/283 (34%), Gaps = 52/283 (18%)
Query: 115 YGSAGYTGYYNNYQQQPNQTYSQPVGAY--QNTGAPYQP----ISSFQNTGSYAGSANYS 168
Y A Y+ Y QP Q Y+Q AY Q+ G QP + Q T +Y G Y+
Sbjct: 9 YSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATY-GQTAYA 67
Query: 169 STYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSV 228
++Y P P Y T Q Y+ + G+Y DS ++ TT
Sbjct: 68 TSYGQP-PTGYSTPTAPQ---AYSQPVQGYGTGAY-------------DSTTATVTTTQA 110
Query: 229 QYQQQQ---QNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPN---SQP 282
Y Q P Y Q + AP + T ++T GY P+ Q
Sbjct: 111 SYAAQSAYGTQPAYPTYGQQPTATAPTRPQDGNKPAET--SQPQSSTGGYNQPSLGYGQS 168
Query: 283 QQSYP--PYWRQDSSASAVPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLD 340
SYP P +A PS+ P + +S Y Q+S Q QP S
Sbjct: 169 NYSYPQVPGSYPMQPVTAPPSYPPTSYSSSQPTSY----DQSSYSQQNTYGQP---SSYG 221
Query: 341 LKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQVVSTPIQ 383
+SSY QQ + Q PP PP P Q
Sbjct: 222 QQSSY----GQQSSYGQQ-------PPTSYPPQTGSYSQAPSQ 253
Score = 46.6 bits (109), Expect = 3e-04
Identities = 76/289 (26%), Positives = 99/289 (33%), Gaps = 65/289 (22%)
Query: 51 STANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSS 110
+ A GYS T Q Q G ++ A + GT P D SY +
Sbjct: 12 AAAQQGYSAYTAQPTQ-----------GYAQTTQAYGQQSYGTYGQPTD----VSYTQAQ 56
Query: 111 NPYGYGSAGYTGYYNNYQQQPN--------QTYSQPVGAYQNTGAPYQPISSFQNT-GSY 161
YG T Y +Y Q P Q YSQPV Y TGA ++ T SY
Sbjct: 57 TTATYGQ---TAYATSYGQPPTGYSTPTAPQAYSQPVQGY-GTGAYDSTTATVTTTQASY 112
Query: 162 AGSANYSSTYYNPA------------------PADYQ-----TTGVYQNSTGY--ANQAP 196
A + Y + P PA+ T G Q S GY +N +
Sbjct: 113 AAQSAYGTQPAYPTYGQQPTATAPTRPQDGNKPAETSQPQSSTGGYNQPSLGYGQSNYSY 172
Query: 197 PWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENL 256
P GSY +Y P S SS T+ Q QQN + + + S
Sbjct: 173 PQVPGSYPMQPVTAPPSYPPTSYSSSQPTSYDQSSYSQQNTYGQPSSYGQQS-------- 224
Query: 257 SVTSSSTFGGPIPAA----TSGYATPNSQPQQSYPPYWRQDSSASAVPS 301
S S++G P + T Y+ SQ Q Y +Q S PS
Sbjct: 225 SYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPS 273
Score = 42.0 bits (97), Expect = 0.008
Identities = 57/235 (24%), Positives = 84/235 (35%), Gaps = 29/235 (12%)
Query: 188 STGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEV 247
ST Y+ + YS+Y + P + G A T+ Y QQ + Y T+V
Sbjct: 3 STDYSTYSQAAAQQGYSAYTAQP---------TQGYAQTTQAYGQQS---YGTYGQPTDV 50
Query: 248 SC--APGTENLSVTSSSTFGGPIPAATSGYATPN-----SQPQQSYPPYWRQDSSASAVP 300
S A T T+ +T G P +GY+TP SQP Q Y ++A+
Sbjct: 51 SYTQAQTTATYGQTAYATSYGQPP---TGYSTPTAPQAYSQPVQGYGTGAYDSTTATVTT 107
Query: 301 SFQPAAINS--GDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQ 358
+ A S G Y +G Q + T P N P + + +
Sbjct: 108 TQASYAAQSAYGTQPAYPTYGQQPTATAPTRPQDGN--KPAETSQPQSSTGGYNQPSLGY 165
Query: 359 GTNLYLPPPPPLPPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQP 413
G + Y P P P Q V + P S + + + + TYGQP
Sbjct: 166 GQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSSQPTSYD---QSSYSQQNTYGQP 217
Score = 37.7 bits (86), Expect = 0.16
Identities = 58/243 (23%), Positives = 83/243 (33%), Gaps = 42/243 (17%)
Query: 169 STYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSS--GAATT 226
STY A + Q + GYA + SY +Y +YT ++ G
Sbjct: 7 STYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATYGQTAY 66
Query: 227 SVQYQQQ---QQNPWA-DYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQP 282
+ Y Q P A Y+Q G + S T++ T AA S Y T
Sbjct: 67 ATSYGQPPTGYSTPTAPQAYSQPVQGYGTGAYD-STTATVTTTQASYAAQSAYGT----- 120
Query: 283 QQSYPPYWRQDSSAS---------AVPSFQPAAINSGDHD---GYWNHGAQTSQIHQTNP 330
Q +YP Y +Q ++ + + QP + G + GY Q+ + P
Sbjct: 121 QPAYPTYGQQPTATAPTRPQDGNKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYP 180
Query: 331 IQPNYQSPLDLKSSYDNFQ---------DQQKTV---------SSQGTNLYLPPPPPLPP 372
+QP P +SY + Q QQ T SS G PP
Sbjct: 181 MQPVTAPPSYPPTSYSSSQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSY 240
Query: 373 PPQ 375
PPQ
Sbjct: 241 PPQ 243
>PAN1_YEAST (P32521) PAN1 protein
Length = 1480
Score = 51.2 bits (121), Expect = 1e-05
Identities = 69/280 (24%), Positives = 92/280 (32%), Gaps = 72/280 (25%)
Query: 111 NPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQPISSFQNTGSYAGSANYSST 170
NPY GY QQQPN Y Q + QP Q
Sbjct: 3 NPYQQQGMGYQQQQQQQQQQPNGFYPQQQQGQSSNQPQGQPQPQQQ------------MA 50
Query: 171 YYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSS---GAATTS 227
+ P Q TG+ + N S+SS P T Y + N+ G
Sbjct: 51 FNQP-----QATGIGGMPQSFGN--------SFSSMPQQPQTGYNNNGNNGSVYGNGNFG 97
Query: 228 VQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYP 287
Q QQQQQ + S P + ++ T P PA QPQ
Sbjct: 98 QQPQQQQQQAKPQHTGYVPNSSMP-----MMNTTGTMPPPNPA---------QQPQ---- 139
Query: 288 PYWRQDSSASAVPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPN----YQSPLDLKS 343
+ S QP GY+ A T+ +H P+Q Y S +L S
Sbjct: 140 -----------LQSIQPQGT------GYYQ-AANTANVHSVQPLQSQGTGYYVSTPNLIS 181
Query: 344 SYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQVVSTPIQ 383
S Q+ + +QGT Y P +PPP Q P++
Sbjct: 182 S----NQTQQPLQAQGTGYYQSQPQQVPPPQQAQSLQPLK 217
>SMF1_HUMAN (O14497) SWI/SNF-related, matrix-associated,
actin-dependent regulator of chromatin subfamily F
member 1 (SWI-SNF complex protein p270) (B120)
Length = 1902
Score = 50.8 bits (120), Expect = 2e-05
Identities = 79/322 (24%), Positives = 108/322 (33%), Gaps = 47/322 (14%)
Query: 27 GQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAG 86
G+ +P Y T P SQ G S+P + QP G ++
Sbjct: 5 GKMRPQPYGGTNPYSQQ----------QGPPSDPQQGHGYPGQPYGSQTPQRYPMTVQGR 54
Query: 87 NSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNY------------QQQPNQT 134
S +G + Q Y P GYG G T YYN QQ P+QT
Sbjct: 55 AQSAMGGLSYTQQIPPY----GQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQT 110
Query: 135 -YSQPVGAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYAN 193
++QP Q P Q SS Y+ + +PAP Q + Q +
Sbjct: 111 PHAQPSYQQQPQSQPPQLQSS---QPPYSQQPSQPPHQQSPAPYPSQQSTTQQ----HPQ 163
Query: 194 QAPPWNN-GSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPG 252
PP++ + S Y P + S AA Q QQ QQ Y+Q P
Sbjct: 164 SQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTA----YSQQRF---PP 216
Query: 253 TENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQ--PAAINSG 310
+ L S +FG +A S ++ Q + R S S P
Sbjct: 217 PQEL---SQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGA 273
Query: 311 DHDGYWNHGAQTSQIHQTNPIQ 332
G G +SQ Q+NP Q
Sbjct: 274 LSPGVSTSGISSSQGEQSNPAQ 295
Score = 37.7 bits (86), Expect = 0.16
Identities = 100/463 (21%), Positives = 150/463 (31%), Gaps = 105/463 (22%)
Query: 13 PAQPHQFENRHFDPGQNQPPSYA-------PTTPG-SQAVSWAVQSSTANGGYSNPTYQY 64
P P + + G +PP+ A P PG S++ S +Q + +G S+ T+Q
Sbjct: 761 PQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFNDG--SDSTFQ- 817
Query: 65 DQHPQPPGRSIQDGQNVSSVAG------NSSNLGTANVPQDYNAYTSYPSSSN-----PY 113
++ P Q N S + G N G+ + + S N PY
Sbjct: 818 KRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPY 877
Query: 114 ------GYGSAG--------YTGYYNNYQQQPNQTYSQPVGAYQN--TGAP--------- 148
G G+ Y G Y+ + +P +G N TGAP
Sbjct: 878 SRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPG------IGPEGNMSTGAPQPNLMPSNP 931
Query: 149 ---------YQPISSFQNTGSYAGSANYSSTYYNPAPADY---QTTGVYQNSTGY----- 191
Y P Q + N ST P+ + + QTT Q Y
Sbjct: 932 DSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYKRPMD 991
Query: 192 ANQAPPWNNGS-------YSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQ 244
PP YS+ P P + A+ Q Q Q +P D YNQ
Sbjct: 992 GTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPAS----QQQAAQPSPQQDVYNQ 1047
Query: 245 TEVSCAPGTENLSVTSSSTFGGPIPAATSGY------ATPNSQPQQSYPPYWRQDSSASA 298
+ P T + T GGP + A P + QQ+ PP ++
Sbjct: 1048 YG-NAYPATAT-AATERRPAGGPQNQFPFQFGRDRVSAPPGTNAQQNMPPQMMGGPIQAS 1105
Query: 299 VPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQ--SPLDLKSSYDNFQDQQKTVS 356
Q + G +D +N+ + S + P P Y + D D + + +
Sbjct: 1106 AEVAQQGTMWQGRNDMTYNYANRQST--GSAPQGPAYHGVNRTDEMLHTDQRANHEGSWP 1163
Query: 357 SQGTN------------LYLPPPPPLPPPPQQVVSTPIQSAPS 387
S GT + PPP PPP P S+P+
Sbjct: 1164 SHGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPA 1206
Score = 37.7 bits (86), Expect = 0.16
Identities = 70/302 (23%), Positives = 98/302 (32%), Gaps = 41/302 (13%)
Query: 107 PSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPY-QPISSFQNTGSYAGSA 165
PS+ + Y + Y QQQ + +Y + G P P S Q T
Sbjct: 928 PSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQ---FSTQGTPSGSPFPSQQTTMYQQQQQ 984
Query: 166 NYS----STYYNPAPADYQTTGVYQNSTGYAN----QAPPWNNGSYSSY-ASHPHTN--- 213
NY TY PA STG Q PP S A+ P
Sbjct: 985 NYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDV 1044
Query: 214 YTPDSNSSGAATTSVQYQQQQ---QNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPA 270
Y N+ A T+ ++ QN + + + VS PGT GGPI A
Sbjct: 1045 YNQYGNAYPATATAATERRPAGGPQNQFPFQFGRDRVSAPPGTNAQQNMPPQMMGGPIQA 1104
Query: 271 A--TSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSGD----------HDGYW-N 317
+ + T Y + S+ SA +N D H+G W +
Sbjct: 1105 SAEVAQQGTMWQGRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPS 1164
Query: 318 HGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQV 377
HG + + P+ P + P + Q+ VSS P PLP P +
Sbjct: 1165 HGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSS---------PAPLPRPMENR 1215
Query: 378 VS 379
S
Sbjct: 1216 TS 1217
>DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian
atrophy protein)
Length = 1185
Score = 50.8 bits (120), Expect = 2e-05
Identities = 93/410 (22%), Positives = 142/410 (33%), Gaps = 72/410 (17%)
Query: 12 VPAQPHQFENRHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPP 71
+P+ PH F NQPP Y + SQAV W+ Q P P
Sbjct: 405 LPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAV-WS---------------QGPPPPPPY 448
Query: 72 GRSIQDGQNVSSVAGNSSNLGTANVPQDYNAY-TSYPSSSNPYGYGSAGYTGYYNNYQQQ 130
GR + + SN P A T++P S T ++++ QQQ
Sbjct: 449 GRLLAN-----------SNAHPGPFPPSTGAQSTAHPPVS----------THHHHHQQQQ 487
Query: 131 PNQTYSQPVGAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTG 190
Q Q + N+G P P +F + G +++ + Y +P+ + G
Sbjct: 488 QQQQQQQQQQHHGNSGPP--PPGAFPHP--LEGGSSHHAHPYAMSPS---LGSLRPYPPG 540
Query: 191 YANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCA 250
A+ PP + SYS N P S+SS +++++ Q +P Q
Sbjct: 541 PAHLPPPHSQVSYSQAGP----NGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPF 596
Query: 251 PGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSG 310
P ++ TSS+T I S A + PPY ++ S A + P G
Sbjct: 597 PPVPTVT-TSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPG 655
Query: 311 DHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPP--- 367
+ G + P P F+ TV LPP
Sbjct: 656 SPPSF-RTGTPPGYRGTSPPAGPG------------TFKPGSPTVGPGP----LPPAGPS 698
Query: 368 --PPLPPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQPKI 415
P LPPPP S P SA + + + + P +P + PK+
Sbjct: 699 GLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKV 748
Score = 33.9 bits (76), Expect = 2.2
Identities = 96/457 (21%), Positives = 149/457 (32%), Gaps = 62/457 (13%)
Query: 49 QSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPS 108
+S N T Q PQ P ++ S+ G S N ++ P+D + + +
Sbjct: 80 ESEETNAPKKTKTEQELPRPQSPS-------DLDSLDGRSLNDDGSSDPRDIDQ-DNRST 131
Query: 109 SSNPYGYGSA-GYTGYYNNYQQQPNQTYSQPV----GAYQNTGAPYQPISSFQNTGSYAG 163
S + Y GS + + Q P + Y P P QP +SF+ S
Sbjct: 132 SPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTP 191
Query: 164 SANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGA 223
+ + AP + T+ ++Q G P G S P P G
Sbjct: 192 TGYH-------APMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGP-----PMGPKGGG 239
Query: 224 ATTSVQYQQQ-QQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQP 282
A +SV +Q+P S A G ++ GG +P+A P+ P
Sbjct: 240 AASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTP 299
Query: 283 QQSYPPYWRQDSSASA---------VPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQ- 332
PP R ++ASA +P P+ G G G + +P
Sbjct: 300 NLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSL 359
Query: 333 ---------PNYQSPLDLKSSYDNFQDQQKTVSSQGTNLY-----LPP-PPPLPPPPQQV 377
P + P SS + SS + + LP P PPP
Sbjct: 360 PPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLS 419
Query: 378 VST--PIQSAPSLDAKRVSKMQIPTNP---RIASNLTYGQPKIEKDSSTTNTALKPA--- 429
VS P + PSL ++ V P P R+ +N + +TA P
Sbjct: 420 VSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTH 479
Query: 430 ---YLAVSLPKSTEKISSNDAANSILKPGMFPKSLRG 463
+ + ++ + + PG FP L G
Sbjct: 480 HHHHQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEG 516
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212
precursor
Length = 838
Score = 50.4 bits (119), Expect = 2e-05
Identities = 88/384 (22%), Positives = 100/384 (25%), Gaps = 41/384 (10%)
Query: 6 TNTETLVPAQPHQFENRHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYD 65
T+ + L Q + PGQ Q P Q Q G
Sbjct: 297 TSLQQLGQGQSGYYPTSPQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPGQG--------- 347
Query: 66 QHPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYN 125
Q Q PG+ Q GQ S P Y + P+ S G G G
Sbjct: 348 QQGQQPGQGQQPGQGQPGYYPTSPQQSGQGQPGYYPTSSQQPTQSQQPGQGQQGQQVGQG 407
Query: 126 NYQQQPNQTYSQPVGAYQNTGAPYQPISSFQ-NTGSYAGSANYSSTYYNPAPADYQTTGV 184
QQP Q Q G Q P P+ S Q G Y S S P G
Sbjct: 408 QQAQQPGQ--GQQPGQGQPGYYPTSPLQSGQGQPGYYLTSPQQSGQGQQPGQLQQSAQGQ 465
Query: 185 YQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNP--WAD-- 240
G Q G P G TS Q Q Q P W
Sbjct: 466 KGQQPGQGQQP---GQGQQGQQPGQGQQGQQPGQGQPGYYPTSPQQSGQGQQPGQWQQPG 522
Query: 241 -----YYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSS 295
YY + + G TS G QP Q P Q
Sbjct: 523 QGQPGYYPTSPLQPGQGQPGYDPTSPQQPG------------QGQQPGQLQQPAQGQQGQ 570
Query: 296 --ASAVPSFQPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNY-QSPLDLKSSYDNFQDQQ 352
A QPA + G G Q Q Q QP Q P + Q QQ
Sbjct: 571 QLAQGQQGQQPAQVQQGQQPAQGQQGQQLGQGQQGQ--QPGQGQQPAQGQQGQQPGQGQQ 628
Query: 353 KTVSSQGTNLYLPPPPPLPPPPQQ 376
QG P P PQ+
Sbjct: 629 GQQPGQGQQPGQGQPWYYPTSPQE 652
Score = 47.8 bits (112), Expect = 2e-04
Identities = 91/422 (21%), Positives = 111/422 (25%), Gaps = 64/422 (15%)
Query: 24 FDPGQNQPPSYAPTTPGSQAVSWAVQS------STANGGYSNPTYQYDQHPQPPGRSIQD 77
F PG+ PP Q + W + + + Y PQ PG+ Q
Sbjct: 85 FYPGETTPPQQL-----QQRIFWGIPALLKRYYPSVTSPQQVSYYPGQASPQRPGQGQQP 139
Query: 78 GQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQ 137
GQ S G Q Y Y + P + G GYY QQP Q Q
Sbjct: 140 GQGQQSGQGQ----------QGY--YPTSPQQPGQWQQPEQGQPGYYPTSPQQPGQ-LQQ 186
Query: 138 PVGAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAP- 196
P Q G Y P + Q + Q + G Q P
Sbjct: 187 PAQGQQ------------PGQGQQGRQPGQGQPGYYPTSSQLQPGQLQQPAQGQQGQQPG 234
Query: 197 PWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENL 256
G P G Q QQ YY + G
Sbjct: 235 QGQQGQQPGQGQQPGQGQQGQQPGQGQQPGQGQQGQQLGQGQQGYYPTSLQQSGQGQPGY 294
Query: 257 SVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSGDHDGYW 316
TS G + Y T QP Q P Q + QP G G
Sbjct: 295 YPTSLQQLG---QGQSGYYPTSPQQPGQGQQPGQLQQPAQGQ----QPEQGQQGQQPGQG 347
Query: 317 NHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQ 376
G Q Q Q QP Y Y Q S QG Y P P Q
Sbjct: 348 QQGQQPGQGQQPGQGQPGY---------YPTSPQQ----SGQGQPGYYPTSSQQPTQSQ- 393
Query: 377 VVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQPKIEKDSSTTNTALKPAYLAVSLP 436
Q ++V + Q P GQP S + +P Y S
Sbjct: 394 ------QPGQGQQGQQVGQGQQAQQPGQGQQPGQGQPGYYPTSPLQSGQGQPGYYLTSPQ 447
Query: 437 KS 438
+S
Sbjct: 448 QS 449
Score = 34.7 bits (78), Expect = 1.3
Identities = 41/143 (28%), Positives = 51/143 (34%), Gaps = 37/143 (25%)
Query: 15 QPHQFENRHFDPGQNQP--------------PSYAPTT-----PGSQAVSWAVQSSTANG 55
QP Q++ PGQ QP Y PT+ G Q W QS
Sbjct: 664 QPGQWQQ----PGQGQPGYYLTSPLQLGQGQQGYYPTSLQQPGQGQQPGQWQ-QSGQGQH 718
Query: 56 GYSNPTYQYDQHPQPPGRSIQDGQNVSSV-------AGNSSNLGTANVP-QDYNAYTSYP 107
GY + Q Q PG+ +Q GQ +G LG P Q Y YP
Sbjct: 719 GYYPTSPQLSGQGQRPGQWLQPGQGQQGYYPTSPQQSGQGQQLGQWLQPGQGQQGY--YP 776
Query: 108 SSSNPYGYG---SAGYTGYYNNY 127
+S G G G GYY++Y
Sbjct: 777 TSLQQTGQGQQSGQGQQGYYSSY 799
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)
Length = 512
Score = 50.4 bits (119), Expect = 2e-05
Identities = 50/201 (24%), Positives = 74/201 (35%), Gaps = 31/201 (15%)
Query: 88 SSNLGTANVPQDYNAYTSYPS------SSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGA 141
+SN T Q Y AY + P S+ PYG S G G + +YS G
Sbjct: 2 ASNDYTQQATQSYGAYPTQPGQGYSQQSNQPYGQQSYGGYGQSTDTSGYGQSSYSGSYGQ 61
Query: 142 YQNTGAPYQPISSFQNTGSYAGSANYSSTY--------YNPAPADYQTTGVYQNSTGYAN 193
QN+ + + + G Y S + S+Y Y PA T+G Y +S+ +
Sbjct: 62 TQNSYSTQSAPQGYGSAGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSG 121
Query: 194 QAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGT 253
P G Y + Y S G QQQ NP Y Q++ + + G
Sbjct: 122 YGQP-QGGGYGQ-----QSGYGGQQQSYG--------QQQSYNPPQGYGQQSQYNSSGGG 167
Query: 254 ENLSVTSSSTFGGPIPAATSG 274
++G P+ +SG
Sbjct: 168 GG---GGGGSYGQDQPSMSSG 185
Score = 41.2 bits (95), Expect = 0.014
Identities = 53/206 (25%), Positives = 75/206 (35%), Gaps = 32/206 (15%)
Query: 4 EGTNTETLVPAQPHQFENRHFDPGQNQP---PSYAPTTPGSQAVSWAVQSSTANGGYSNP 60
+ T + P QP Q + NQP SY + + S + + G +
Sbjct: 9 QATQSYGAYPTQPGQ----GYSQQSNQPYGQQSYGGYGQSTDTSGYGQSSYSGSYGQTQN 64
Query: 61 TYQYDQHPQPPGRSIQDGQNVSSVAG---NSSNLGTANVPQDYNAYTSYPSSSNPYGYG- 116
+Y PQ G + G + SS + SS G P + SY SSS GYG
Sbjct: 65 SYSTQSAPQGYGSAGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSGYGQ 124
Query: 117 --------SAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQPISSFQNTGSYAGSANYS 168
+GY G +Y QQ Q+Y+ P G Y S + ++G G S
Sbjct: 125 PQGGGYGQQSGYGGQQQSYGQQ--QSYNPPQG--------YGQQSQYNSSGGGGGGGGGS 174
Query: 169 STYYNPAPADYQTTGVYQN---STGY 191
P+ + G Y N S GY
Sbjct: 175 YGQDQPSMSSGGGGGGYGNQDQSGGY 200
Score = 36.2 bits (82), Expect = 0.45
Identities = 40/161 (24%), Positives = 57/161 (34%), Gaps = 26/161 (16%)
Query: 188 STGYANQAPPWNNGSYSSYASHPHTNYTPDSN------SSGAATTSVQYQQQQQNPWADY 241
S Y QA SY +Y + P Y+ SN S G S Q+ ++
Sbjct: 3 SNDYTQQATQ----SYGAYPTQPGQGYSQQSNQPYGQQSYGGYGQSTDTSGYGQSSYSGS 58
Query: 242 YNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPS 301
Y QT+ S + + S+ +G ++ S Y Q SYP Y +Q + +S S
Sbjct: 59 YGQTQNSYSTQSAPQGYGSAGGYGSS-QSSQSSYGQ-----QSSYPGYGQQPAPSSTSGS 112
Query: 302 F----------QPAAINSGDHDGYWNHGAQTSQIHQTNPIQ 332
+ QP G GY Q NP Q
Sbjct: 113 YGSSSQSSGYGQPQGGGYGQQSGYGGQQQSYGQQQSYNPPQ 153
>XMS2_DROME (Q9U3V9) Xmas-2 protein
Length = 1370
Score = 50.1 bits (118), Expect = 3e-05
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 33/199 (16%)
Query: 762 DQLKSIRQDLTVQRIRNQLTVKVYETHARFAMEAG---------------DLSEYNQCQS 806
D+ +SIR+++T Q + + VK+ E ARF + + +C
Sbjct: 296 DRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSVFDSKINAENLTKCLQ 355
Query: 807 QLTALYAD-GIEG----SYMEFAAYNLLCVIMHSNNNRDLLSSMTRLSDEAKKDEAVKHA 861
L +Y D I+G EF Y +L + +N L + +L E + V+ A
Sbjct: 356 TLKYMYHDLRIKGVPCPKEAEFRGYIVLLNLADAN----FLWDIGQLPAELQSCPEVRQA 411
Query: 862 LAVRAAVTSGNYVAFFRLY--KEAPNLNTCLMDLYVEKMRYKAVSCMCRSYR-------P 912
+ A+ N+V FF+L K+ L+ C++ Y ++R + + ++YR
Sbjct: 412 IQFYLALQDTNFVRFFQLLADKDTSYLSACILVNYFTRLRVLGLHRLIQAYRSPRKDEVS 471
Query: 913 TVPVSYISHVLGFSTSAVA 931
++P+SYI+ +L F++ A
Sbjct: 472 SLPLSYIAELLSFASEQEA 490
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.125 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,138,236
Number of Sequences: 164201
Number of extensions: 5730686
Number of successful extensions: 23556
Number of sequences better than 10.0: 456
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 437
Number of HSP's that attempted gapping in prelim test: 20867
Number of HSP's gapped (non-prelim): 1654
length of query: 1003
length of database: 59,974,054
effective HSP length: 120
effective length of query: 883
effective length of database: 40,269,934
effective search space: 35558351722
effective search space used: 35558351722
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0260.13