BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0260.11
         (337 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810...    39  0.019

>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
           (ORF240b)
          Length = 240

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 34/102 (33%), Positives = 49/102 (47%), Gaps = 9/102 (8%)

Query: 138 LHSVFPIKDLGELHYFLMKHCKS-ASTLMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
           L S F +KDLG +HYFL    K+  S L +        +L N     +  + +   L ++
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA--GMLDCKPMSTPLPLK 84

Query: 197 *NSFGFSFNSHDSWLYKSIVGAL------HPDIAFCVNKVCQ 232
            NS   +    D   ++SIVGAL       PDI++ VN VCQ
Sbjct: 85  LNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQ 126


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.364    0.164    0.596 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,733,641
Number of Sequences: 164201
Number of extensions: 1020638
Number of successful extensions: 4907
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4905
Number of HSP's gapped (non-prelim): 2
length of query: 337
length of database: 59,974,054
effective HSP length: 111
effective length of query: 226
effective length of database: 41,747,743
effective search space: 9434989918
effective search space used: 9434989918
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 66 (30.0 bits)