BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0258a.2
(167 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NRDC_RAT (P47245) Nardilysin precursor (EC 3.4.24.61) (N-arginin... 40 0.002
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 40 0.002
NUCL_MOUSE (P09405) Nucleolin (Protein C23) 39 0.007
NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3 39 0.007
NRDC_MOUSE (Q8BHG1) Nardilysin precursor (EC 3.4.24.61) (N-argin... 38 0.009
TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protei... 37 0.021
CN3B_RAT (Q63085) cGMP-inhibited 3',5'-cyclic phosphodiesterase ... 37 0.021
NUCL_RAT (P13383) Nucleolin (Protein C23) 37 0.027
NUCL_MESAU (P08199) Nucleolin (Protein C23) 37 0.027
SN24_HUMAN (P51532) Possible global transcription activator SNF2... 36 0.036
SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calciu... 36 0.047
NUCL_HUMAN (P19338) Nucleolin (Protein C23) 36 0.047
ASF1_YEAST (P32447) Anti-silencing protein 1 35 0.061
SUHW_DROVI (Q08876) Suppressor of hairy wing protein 35 0.10
U13A_RAT (Q62768) Unc-13 homolog A (Munc13-1) 34 0.14
TUBE_DROVI (Q08171) Tube protein 34 0.14
NPM_CHICK (P16039) Nucleophosmin (NPM) (Nucleolar phosphoprotein... 34 0.14
MODU_DROME (P13469) DNA-binding protein modulo 34 0.14
LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Le... 34 0.14
CENB_CRIGR (P48988) Major centromere autoantigen B (Centromere p... 34 0.14
>NRDC_RAT (P47245) Nardilysin precursor (EC 3.4.24.61) (N-arginine
dibasic convertase) (NRD convertase) (NRD-C)
Length = 1161
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/101 (28%), Positives = 53/101 (51%), Gaps = 15/101 (14%)
Query: 14 VQFLKVQDDSLLQWELVDVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVA 73
+Q L + D S ++ + + D EEE+E+E ++ +++ E+ D D+ A
Sbjct: 119 LQALLISDLSNVEGKTGNATDEEEEEEEEEEEGEEEEEEEEDDDDDD-------DEDSGA 171
Query: 74 VVEIDRQQYHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDEL 114
++ D ++ G+ DDEE+ DDE DDDD + ++EL
Sbjct: 172 EIQDDDEE-----GF---DDEEEFDDDEHDDDDLDNEENEL 204
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 40.4 bits (93), Expect = 0.002
Identities = 30/97 (30%), Positives = 51/97 (51%), Gaps = 2/97 (2%)
Query: 18 KVQDDSL-LQWELVDVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVE 76
+VQ++S +Q + +V + EEE+E+E ++ +++ EE + + D + E
Sbjct: 557 EVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAE 616
Query: 77 IDRQQYHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDE 113
D A EDD+E+ DDEEDDD+ D D+E
Sbjct: 617 EDEDDAEEDEDDAEEDDDEED-DDEEDDDEDEDEDEE 652
Score = 31.6 bits (70), Expect = 0.88
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 33 VDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYED 92
VD EE++++E + Q+++ V+E D + V E + ++ E+
Sbjct: 545 VDKEEDKKEESKEVQEESKEVQE------------DEEEVEEDEEEEEEEEEEEEEEEEE 592
Query: 93 DEEQVVDDEEDDDDRCDLDDE 113
+EE+ ++EE+++D + D++
Sbjct: 593 EEEEEEEEEEEEEDEDEEDED 613
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)
Length = 706
Score = 38.5 bits (88), Expect = 0.007
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 34 DAEEEQEQEPDQNQQDAAPVE-EIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYED 92
D +EE E + D+++ D E E I+ ++P P A A + ED
Sbjct: 147 DEDEEDEDDSDEDEDDEEEDEFEPPIVKGVKPAKAAPAAPASED-------------EED 193
Query: 93 DEEQVVDDEEDDDDRCDLDDELVPWEVGNKLGRQRMKKL 131
DE++ DDEEDDD+ + D E E+ G++ K+
Sbjct: 194 DEDE--DDEEDDDEEEEDDSEEEVMEITTAKGKKTPAKV 230
Score = 34.7 bits (78), Expect = 0.10
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 9/83 (10%)
Query: 31 DVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAY 90
D D E++ E+E D ++++ + K V+P E D ++
Sbjct: 196 DEDDEEDDDEEEEDDSEEEVMEITTAKGKKTPAKVVPMKAKSVAEEEDDEE--------- 246
Query: 91 EDDEEQVVDDEEDDDDRCDLDDE 113
ED++++ DDEE+DD+ D ++E
Sbjct: 247 EDEDDEDEDDEEEDDEDDDEEEE 269
Score = 33.9 bits (76), Expect = 0.18
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 31 DVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAY 90
D D E+E ++E D +++ EE+ +I VV + +
Sbjct: 190 DEEDDEDEDDEEDDDEEEEDDSEEEVM---EITTAKGKKTPAKVVPMKAKSV-----AEE 241
Query: 91 EDDEEQVVDDEEDDDDRCDLDDE 113
EDDEE+ DDE++DD+ D +D+
Sbjct: 242 EDDEEEDEDDEDEDDEEEDDEDD 264
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3
Length = 802
Score = 38.5 bits (88), Expect = 0.007
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 6 MQFLLLEQVQFLKVQDDSLLQWELVDVVDAEEEQEQEP-DQNQQDAAPVEEIKIIHQIRP 64
++F E+ + + ++++ Q EL DV D EEE ++E ++N + EE + HQ +
Sbjct: 39 IEFDAPEEEREAEREEENEEQHELEDVNDEEEEDKEEKGEENGEVINTEEEEEEEHQQKG 98
Query: 65 VLPDPDAVAVVEIDRQQYHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDELVPWEVGN 121
D D D + E++EE+ DD++DDDD D ++E E GN
Sbjct: 99 GNDDDDD------DNE----------EEEEEEEDDDDDDDDDDDDEEEEEEEEEEGN 139
>NRDC_MOUSE (Q8BHG1) Nardilysin precursor (EC 3.4.24.61) (N-arginine
dibasic convertase) (NRD convertase) (NRD-C)
Length = 1161
Score = 38.1 bits (87), Expect = 0.009
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 14 VQFLKVQDDSLLQWELVDVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVA 73
+Q L + D S ++ + + D EEE+E+E ++ D ++ D D+ A
Sbjct: 119 LQALLISDLSNVEGKTGNATDEEEEEEEEEEEEDDDDDDDDDDD----------DEDSGA 168
Query: 74 VVEIDRQQYHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDE 113
++ D ++ G+ DDEE+ DD++D+ D DL++E
Sbjct: 169 EIQDDDEE-----GF---DDEEEFDDDDDDEHDDDDLENE 200
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/78 (26%), Positives = 35/78 (43%)
Query: 36 EEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYEDDEE 95
E E+E N D ++ Q R + A++ D G A +++EE
Sbjct: 84 ESEEEGRSFSNVGDPEIIKSPSDPKQYRYIKLQNGLQALLISDLSNVEGKTGNATDEEEE 143
Query: 96 QVVDDEEDDDDRCDLDDE 113
+ ++EE+DDD D DD+
Sbjct: 144 EEEEEEEEDDDDDDDDDD 161
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC
6.3.2.-)
Length = 4065
Score = 37.0 bits (84), Expect = 0.021
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 21 DDSLLQWELVDVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVV----E 76
DD W+ D D +EE E+E D + +A ++E ++ + R P+ A+ +
Sbjct: 2529 DDDGASWD--DGTDEDEEDEEELDY-EAEAQNMQEAQLHN--RRTFPEIMRAAMENAGDD 2583
Query: 77 IDRQQYHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDELVPWEVGNKLG 124
+D + G+ +DDE+ DD+ED+ + D+DD++ G +LG
Sbjct: 2584 LDAEPIRDFDGHYIDDDEDGEEDDDEDEGE-DDMDDDMYFDGDGLRLG 2630
Score = 30.4 bits (67), Expect = 2.0
Identities = 27/102 (26%), Positives = 44/102 (42%), Gaps = 11/102 (10%)
Query: 21 DDSLLQWELVDVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQ 80
DD EL D ++ E P + D + E+ + P P V + E D +
Sbjct: 2419 DDEQYDDELDYGDDMSQDNEDNPSDEEDDLGEMGEMGGM----PGQPGVVEVLMGENDDE 2474
Query: 81 QYHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDELVPWEVGNK 122
+ + +D ++ DDE D+DD +L DE EVG++
Sbjct: 2475 EDN-------DDMDDMDEDDEMDEDDEQELSDEDEDEEVGSE 2509
>CN3B_RAT (Q63085) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC
3.1.4.17) (Cyclic GMP inhibited phosphodiesterase B)
(CGI-PDE B) (CGIPDE1)
Length = 1108
Score = 37.0 bits (84), Expect = 0.021
Identities = 23/91 (25%), Positives = 43/91 (46%), Gaps = 4/91 (4%)
Query: 44 DQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYEDDEEQVVDDEED 103
D++ A ++E I H + P+ DA ++ + +DD++ DD++D
Sbjct: 960 DRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWIEAEEGDDTESDDDDDDDDDDDDD 1019
Query: 104 DDDRCDLDDELVPWEVGNKLGRQRMKKLGKR 134
DD+ D DDE E + L + ++ G+R
Sbjct: 1020 DDEELDSDDE----ETEDNLNPKPQRRKGRR 1046
>NUCL_RAT (P13383) Nucleolin (Protein C23)
Length = 712
Score = 36.6 bits (83), Expect = 0.027
Identities = 27/110 (24%), Positives = 52/110 (46%), Gaps = 12/110 (10%)
Query: 34 DAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYEDD 93
D EEE+E + ++ + P + K ++ PV +VA E D + +D+
Sbjct: 203 DEEEEEEDDSEEEVMEITPAKGKKTPAKVVPV--KAKSVAEEEEDDE----------DDE 250
Query: 94 EEQVVDDEEDDDDRCDLDDELVPWEVGNKLGRQRMKKLGKRACSKMKNSK 143
+E+ +DEED++D D D+E V G+++ + ++ + K K
Sbjct: 251 DEEEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQK 300
Score = 35.8 bits (81), Expect = 0.047
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 36 EEEQEQEPDQNQQDAAPVEEIK--IIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYEDD 93
E+E E++ D + +D +E + ++ ++P P A A + D + +DD
Sbjct: 146 EDEDEEDEDDSDEDEDEEDEFEPPVVKGVKPAKAAPAAPASEDEDEE----------DDD 195
Query: 94 EEQVVDDEEDDDDRCDLDDELV 115
+E DD+E++++ D ++E++
Sbjct: 196 DEDDDDDDEEEEEEDDSEEEVM 217
>NUCL_MESAU (P08199) Nucleolin (Protein C23)
Length = 713
Score = 36.6 bits (83), Expect = 0.027
Identities = 23/83 (27%), Positives = 42/83 (49%), Gaps = 7/83 (8%)
Query: 31 DVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAY 90
D + E+E+E+E D+ ++D + EE +I P VV + +
Sbjct: 189 DEDEEEDEEEEEEDEEEEDDSEEEEAM---EITPAKGKKAPAKVVPVKAKNV----AEED 241
Query: 91 EDDEEQVVDDEEDDDDRCDLDDE 113
+DDEE+ D+EED+++ D ++E
Sbjct: 242 DDDEEEDEDEEEDEEEEEDEEEE 264
Score = 31.2 bits (69), Expect = 1.1
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 31 DVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAY 90
D + EE++E+E D +++A + K V+P E D +
Sbjct: 195 DEEEEEEDEEEEDDSEEEEAMEITPAKGKKAPAKVVPVKAKNVAEEDDDDEE-------- 246
Query: 91 EDDEEQVVDDEEDDDDRCDLDDELVP 116
ED++E+ ++EE+D++ + ++E P
Sbjct: 247 EDEDEEEDEEEEEDEEEEEEEEEEEP 272
>SN24_HUMAN (P51532) Possible global transcription activator SNF2L4
(SNF2-beta) (BRG-1 protein) (Mitotic growth and
transcription activator) (Brahma protein homolog 1)
(SWI/SNF related matrix associated actin dependent
regulator of chromatin subfamily A m
Length = 1647
Score = 36.2 bits (82), Expect = 0.036
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Query: 34 DAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYEDD 93
+ EEE+E++P Q PVEE K I PDPD+ V E+D + H + ++
Sbjct: 665 EEEEEEEEQPQAAQPPTLPVEEKKKI-------PDPDSDDVSEVDAR--HII------EN 709
Query: 94 EEQVVDDE 101
+Q VDDE
Sbjct: 710 AKQDVDDE 717
>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich
calcium-binding protein precursor
Length = 699
Score = 35.8 bits (81), Expect = 0.047
Identities = 21/79 (26%), Positives = 39/79 (48%), Gaps = 6/79 (7%)
Query: 36 EEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYEDDEE 95
+E +E+E ++ +++ A E H+ R + D D H+ HG ++
Sbjct: 190 DEGEEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDE------DVSDGHHHHGPSHRHQGH 243
Query: 96 QVVDDEEDDDDRCDLDDEL 114
+ DD++DDDD D DD++
Sbjct: 244 EEDDDDDDDDDDDDDDDDV 262
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)
Length = 706
Score = 35.8 bits (81), Expect = 0.047
Identities = 31/118 (26%), Positives = 51/118 (42%), Gaps = 16/118 (13%)
Query: 31 DVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAY 90
D D E++ + E D ++++A K + V VA E +
Sbjct: 190 DDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEE----------- 238
Query: 91 EDDEEQVVDDEEDDDDRCDLDDELVPWE-----VGNKLGRQRMKKLGKRACSKMKNSK 143
EDDE++ DD+EDD+D D DDE E V G+++ + ++A + K K
Sbjct: 239 EDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQK 296
Score = 34.3 bits (77), Expect = 0.14
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 34 DAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYEDD 93
D++EE++ + +++++D +E + +I P A A D EDD
Sbjct: 143 DSDEEEDDDSEEDEEDDEDEDEDE--DEIEPAAMKAAAAAPASED------------EDD 188
Query: 94 EEQVVDDEEDDDDRCDLDDE 113
E+ D+++DDD+ D ++E
Sbjct: 189 EDDEDDEDDDDDEEDDSEEE 208
Score = 28.5 bits (62), Expect = 7.4
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 91 EDDEEQVVDDEEDDDDRCDLDDELVP 116
E++++ +DEEDD+D + +DE+ P
Sbjct: 146 EEEDDDSEEDEEDDEDEDEDEDEIEP 171
>ASF1_YEAST (P32447) Anti-silencing protein 1
Length = 279
Score = 35.4 bits (80), Expect = 0.061
Identities = 23/75 (30%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 42 EPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYED---DEEQVV 98
E D+ + P ++++ H +R +L + V I + Y E D+E+
Sbjct: 116 EYDEEELRENPPAKVQVDHIVRNILAEKPRVTRFNIVWDNENEGDLYPPEQPGVDDEEEE 175
Query: 99 DDEEDDDDRCDLDDE 113
DDEE+DDD D DDE
Sbjct: 176 DDEEEDDDEDDEDDE 190
>SUHW_DROVI (Q08876) Suppressor of hairy wing protein
Length = 899
Score = 34.7 bits (78), Expect = 0.10
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 65 VLPDPDAVAVVEIDRQQYHYLHGYAYEDDEEQVVD--DEEDDDDRCDLDDELVPWEVGNK 122
V+ D D + + D + L A E+ EE VV DE+DDDD D D+ +V +
Sbjct: 149 VVEDEDTIDFILADDEVE--LGAGAKENGEEFVVSGVDEDDDDDDDDEDEGVVEGGAKRR 206
Query: 123 LGRQRMKKLGKRACSK 138
G +K++ + C K
Sbjct: 207 SGNNELKEMVEHVCGK 222
>U13A_RAT (Q62768) Unc-13 homolog A (Munc13-1)
Length = 1735
Score = 34.3 bits (77), Expect = 0.14
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 76 EIDRQQYHYLHG-YAYEDDEEQVVDDEEDDDDRCDLDDELVPWE 118
E DR YH H +Y D + DEED +D DL+DE +P E
Sbjct: 294 ERDRDSYHSCHSSVSYHKDSPRWDQDEEDLEDLEDLEDEELPEE 337
>TUBE_DROVI (Q08171) Tube protein
Length = 514
Score = 34.3 bits (77), Expect = 0.14
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 91 EDDEEQVVDDEEDDDDRCDLDDE 113
+DDE++ DD++DDDD D+DDE
Sbjct: 435 DDDEQKEDDDDDDDDDVVDVDDE 457
>NPM_CHICK (P16039) Nucleophosmin (NPM) (Nucleolar phosphoprotein
B23) (Numatrin) (Nucleolar protein NO38)
Length = 294
Score = 34.3 bits (77), Expect = 0.14
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 91 EDDEEQVVDDEEDDDDRCDLDDELVPWEVGNKLGRQRMKKLGKRACSKMKNSKRS 145
EDDE+ D+++D+DD DLDD+ E+ + + + GK +N K S
Sbjct: 161 EDDEDDDEDEDDDEDDEDDLDDD--EEEIKTPMKKPAREPAGKNMQKAKQNGKDS 213
>MODU_DROME (P13469) DNA-binding protein modulo
Length = 542
Score = 34.3 bits (77), Expect = 0.14
Identities = 19/34 (55%), Positives = 20/34 (57%), Gaps = 5/34 (14%)
Query: 91 EDDEEQVVDDEEDDDDRCDLDDELVPWEVGNKLG 124
E+DEE DDEEDDDD DEL P EV G
Sbjct: 94 EEDEEYNSDDEEDDDD-----DELEPGEVSKSEG 122
>LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain
(Legumin B acidic chain); Legumin B beta chain (Legumin
B basic chain)] (Fragment)
Length = 338
Score = 34.3 bits (77), Expect = 0.14
Identities = 22/85 (25%), Positives = 40/85 (46%), Gaps = 7/85 (8%)
Query: 12 EQVQFLKVQDDSLLQWELVDVVDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDA 71
E+ Q +KV+D + ++ E ++E+E +Q+ EE + H+ D D
Sbjct: 33 ERGQIVKVEDG-------LHIISPELQEEEEQSHSQRKEEEEEEQEQRHRKHSKKEDEDE 85
Query: 72 VAVVEIDRQQYHYLHGYAYEDDEEQ 96
E +R+Q H H E+DE++
Sbjct: 86 DEEEEEEREQRHRKHSEKEEEDEDE 110
>CENB_CRIGR (P48988) Major centromere autoantigen B (Centromere
protein B) (CENP-B)
Length = 606
Score = 34.3 bits (77), Expect = 0.14
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 21/105 (20%)
Query: 33 VDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDR------------- 79
V EEE E+E D++ ++ EE + + + A VVE
Sbjct: 445 VGEEEEVEEEGDESDEEEEEEEEEEEESSSEGLEAEDWAQGVVEASGGFGGYSVQEEAQC 504
Query: 80 QQYHYLHGYA--------YEDDEEQVVDDEEDDDDRCDLDDELVP 116
H+L G E+DEE+ +DEEDDDD D D+ VP
Sbjct: 505 PTLHFLEGGEDSDSDSDEEEEDEEEDEEDEEDDDDDEDGDEVPVP 549
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.316 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,908,710
Number of Sequences: 164201
Number of extensions: 995037
Number of successful extensions: 7902
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 5949
Number of HSP's gapped (non-prelim): 935
length of query: 167
length of database: 59,974,054
effective HSP length: 102
effective length of query: 65
effective length of database: 43,225,552
effective search space: 2809660880
effective search space used: 2809660880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0258a.2