BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0253.6
         (499 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RS5_XANCP (P66587) 30S ribosomal protein S5                           112  2e-24
RS5_XANAC (P66586) 30S ribosomal protein S5                           112  2e-24
RS5_PSEPK (Q88QL8) 30S ribosomal protein S5                           112  2e-24
RS5_VIBPA (Q87SZ6) 30S ribosomal protein S5                           112  2e-24
RS5_PSESM (Q889V4) 30S ribosomal protein S5                           112  2e-24
RS5_PASMU (Q9CL47) 30S ribosomal protein S5                           112  3e-24
RS5_VIBVU (Q8DE57) 30S ribosomal protein S5                           110  8e-24
RS5_HAEIN (P44374) 30S ribosomal protein S5                           110  8e-24
RS5_VIBCH (Q9KP01) 30S ribosomal protein S5                           108  3e-23
RS5_PSEAE (Q9HWF2) 30S ribosomal protein S5                           108  3e-23
RS5_SHEON (P59124) 30S ribosomal protein S5                           107  9e-23
RS5_HELPY (P66572) 30S ribosomal protein S5                           107  9e-23
RS5_HELPJ (P66573) 30S ribosomal protein S5                           107  9e-23
RS5_XYLFT (Q87E65) 30S ribosomal protein S5                           105  2e-22
RS5_STAAW (P66580) 30S ribosomal protein S5                           105  2e-22
RS5_STAAN (P66579) 30S ribosomal protein S5                           105  2e-22
RS5_STAAM (P66578) 30S ribosomal protein S5                           105  2e-22
RS5_STAEP (Q8CRH7) 30S ribosomal protein S5                           105  4e-22
RS5_YERPE (Q8ZJ95) 30S ribosomal protein S5                           103  1e-21
RS5_WIGBR (Q8D1Z5) 30S ribosomal protein S5                           103  1e-21

>RS5_XANCP (P66587) 30S ribosomal protein S5
          Length = 180

 Score =  112 bits (281), Expect = 2e-24
 Identities = 67/177 (37%), Positives = 98/177 (54%), Gaps = 4/177 (2%)

Query: 322 LAEER---NELTEKKRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVG 378
           +AEER       ++ R      G   KL+ VNR  K  KGG+   +TA+   G+  G VG
Sbjct: 1   MAEERAPRGRDRDRNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVG 60

Query: 379 FAKAKGPAVPVALQKAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMK 438
           F   K   VPVA+QK+ E+  +NL  V+ +   T+ HA+++     +VY+ PA   TG+ 
Sbjct: 61  FGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVI 119

Query: 439 AGRIVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
           AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct: 120 AGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176


>RS5_XANAC (P66586) 30S ribosomal protein S5
          Length = 180

 Score =  112 bits (281), Expect = 2e-24
 Identities = 67/177 (37%), Positives = 98/177 (54%), Gaps = 4/177 (2%)

Query: 322 LAEER---NELTEKKRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVG 378
           +AEER       ++ R      G   KL+ VNR  K  KGG+   +TA+   G+  G VG
Sbjct: 1   MAEERAPRGRDRDRNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVG 60

Query: 379 FAKAKGPAVPVALQKAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMK 438
           F   K   VPVA+QK+ E+  +NL  V+ +   T+ HA+++     +VY+ PA   TG+ 
Sbjct: 61  FGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVI 119

Query: 439 AGRIVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
           AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct: 120 AGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176


>RS5_PSEPK (Q88QL8) 30S ribosomal protein S5
          Length = 166

 Score =  112 bits (281), Expect = 2e-24
 Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 340 KGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCF 399
           +G+  KL+ VNR  K  KGG++  +TA+   G+  G VGF + K   VP A+QKA E   
Sbjct: 10  EGYIEKLVQVNRVAKTVKGGRIFTFTALTVVGDGKGRVGFGRGKSREVPAAIQKAMEAAR 69

Query: 400 QNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKV 459
           +N+  V+  +  T+ +A + +   +KVY+ PA   TG+ AG  ++ +L +AG +NV +K 
Sbjct: 70  RNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKC 128

Query: 460 VGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
            GS NP N V A FK L A+++P  +  K G++V E
Sbjct: 129 YGSTNPVNVVYATFKGLKAMQSPESIAAKRGKSVEE 164


>RS5_VIBPA (Q87SZ6) 30S ribosomal protein S5
          Length = 167

 Score =  112 bits (280), Expect = 2e-24
 Identities = 63/161 (39%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 333 KRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQ 392
           K + +       KLI VNR  K  KGG+++ +TA+   G+ NG VGF   K   VP A+Q
Sbjct: 3   KEQQVQANDLQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQ 62

Query: 393 KAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGF 452
           KA EK  +N+  +  +E  T+ H ++     +KVY+ PA   TG+ AG  ++ +L +AG 
Sbjct: 63  KAMEKARRNMTTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGV 121

Query: 453 KNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTV 493
            NV SK  GS NP N V+A   AL ++++P  V  K G TV
Sbjct: 122 HNVLSKAYGSTNPINIVRATIDALGSMKSPEMVAAKRGLTV 162


>RS5_PSESM (Q889V4) 30S ribosomal protein S5
          Length = 166

 Score =  112 bits (280), Expect = 2e-24
 Identities = 59/156 (37%), Positives = 93/156 (58%), Gaps = 1/156 (0%)

Query: 340 KGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCF 399
           +G+  KL+ VNR  K  KGG++  +TA+   G+  G VGF + K   VP A+QKA E   
Sbjct: 10  EGYIEKLVQVNRVAKTVKGGRIFTFTALTVVGDGKGRVGFGRGKSREVPAAIQKAMEAAR 69

Query: 400 QNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKV 459
           +N+  V+ +   T+ +A++++   +KVY+ PA   TG+ AG  ++ +L +AG +NV +K 
Sbjct: 70  RNMIQVDLNGT-TLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKC 128

Query: 460 VGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
            GS NP N V A FK L  +++P  +  K G+ V E
Sbjct: 129 YGSTNPVNVVHATFKGLKGMQSPESIAAKRGKRVEE 164


>RS5_PASMU (Q9CL47) 30S ribosomal protein S5
          Length = 166

 Score =  112 bits (279), Expect = 3e-24
 Identities = 63/151 (41%), Positives = 91/151 (59%), Gaps = 1/151 (0%)

Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
           KLI VNR  K  KGG+++ +TA+   G+ NG VGF   K   VP A+QKA EK  +N+  
Sbjct: 14  KLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMIN 73

Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
           V  +E  T+ H I+ +   ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS N
Sbjct: 74  VALNEG-TLQHPIKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTN 132

Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
           P N V+A   AL  +++P  V  K G+TV E
Sbjct: 133 PINVVRATIDALANMKSPEMVAAKRGKTVDE 163


>RS5_VIBVU (Q8DE57) 30S ribosomal protein S5
          Length = 167

 Score =  110 bits (275), Expect = 8e-24
 Identities = 63/161 (39%), Positives = 90/161 (55%), Gaps = 1/161 (0%)

Query: 333 KRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQ 392
           K + +       KLI VNR  K  KGG+++ +TA+   G+ NG VGF   K   VP A+Q
Sbjct: 3   KEQQVQANDLQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQ 62

Query: 393 KAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGF 452
           KA EK  +N+  +  +E  T+ H ++     +KVY+ PA   TG+ AG  ++ +L +AG 
Sbjct: 63  KAMEKARRNMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGV 121

Query: 453 KNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTV 493
            NV SK  GS NP N V+A   AL  +++P  V  K G TV
Sbjct: 122 HNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGLTV 162


>RS5_HAEIN (P44374) 30S ribosomal protein S5
          Length = 166

 Score =  110 bits (275), Expect = 8e-24
 Identities = 62/151 (41%), Positives = 90/151 (59%), Gaps = 1/151 (0%)

Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
           KLI VNR  K  KGG+++ +TA+   G+ NG VGF   K   VP A+QKA EK  +N+  
Sbjct: 14  KLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMIN 73

Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
           V  +E  T+ H ++     ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS N
Sbjct: 74  VALNEG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTN 132

Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
           P N V+A   AL  +++P  V  K G+TV E
Sbjct: 133 PINVVRATIDALANMKSPEMVAAKRGKTVDE 163


>RS5_VIBCH (Q9KP01) 30S ribosomal protein S5
          Length = 167

 Score =  108 bits (270), Expect = 3e-23
 Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 1/161 (0%)

Query: 333 KRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQ 392
           K + +       KLI VNR  K  KGG+++ +TA+   G+ NG VGF   K   VP A+Q
Sbjct: 3   KEQQVQANDLQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQ 62

Query: 393 KAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGF 452
           KA EK  +++  +  +E  T+ H ++     +KVY+ PA   TG+ AG  ++ +L +AG 
Sbjct: 63  KAMEKARRSMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGV 121

Query: 453 KNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTV 493
            NV SK  GS NP N V+A   AL  +++P  V  K G TV
Sbjct: 122 HNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGLTV 162


>RS5_PSEAE (Q9HWF2) 30S ribosomal protein S5
          Length = 166

 Score =  108 bits (270), Expect = 3e-23
 Identities = 59/156 (37%), Positives = 91/156 (57%), Gaps = 1/156 (0%)

Query: 340 KGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCF 399
           +G+  KL+ VNR  K  KGG++  +TA+   G+  G VGF + K   VP A+QKA E   
Sbjct: 10  EGYIEKLVQVNRVAKTVKGGRIFAFTALTVVGDGKGRVGFGRGKAREVPAAIQKAMEAAR 69

Query: 400 QNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKV 459
           +N+  V+ +   T+ +  +++   +KVY+ PA   TG+ AG  ++ +L +AG +NV +K 
Sbjct: 70  RNMIQVDLNGT-TLQYPTKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKC 128

Query: 460 VGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
            GS NP N V A FK L  ++ P  V  K G++V E
Sbjct: 129 YGSTNPVNVVYATFKGLKNMQAPEAVAAKRGKSVEE 164


>RS5_SHEON (P59124) 30S ribosomal protein S5
          Length = 167

 Score =  107 bits (266), Expect = 9e-23
 Identities = 61/151 (40%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
           KLI VNR  KV KGG++  +TA+   G+ NG VG+   K   VP A+QKA EK  +N+  
Sbjct: 15  KLIAVNRVSKVVKGGRIFSFTALTVVGDGNGKVGYGYGKAREVPAAIQKAMEKARRNMVT 74

Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
           VE +   T+ H ++     ++VY+ PA   TG+ AG  ++ +L +AG  NV SK  GS N
Sbjct: 75  VELN-AGTLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTN 133

Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
           P N V+A   AL  +++P  +  K G  V E
Sbjct: 134 PINIVRATVDALVHMKSPSQIAAKRGLNVDE 164


>RS5_HELPY (P66572) 30S ribosomal protein S5
          Length = 153

 Score =  107 bits (266), Expect = 9e-23
 Identities = 59/153 (38%), Positives = 92/153 (59%), Gaps = 2/153 (1%)

Query: 329 LTEKK-RRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAV 387
           +TE+K    + R+ F   ++N+ R  KV KGG+  ++ A++  GN NG+VGF   K   V
Sbjct: 1   MTERKGMEEINREEFQEVVVNIGRVTKVVKGGRRFRFNALVVVGNKNGLVGFGLGKAKEV 60

Query: 388 PVALQKAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTIL 447
           P A++KA +  F+NL  V   +  TIAH I+  +  +++ L PA   TG+ AG   + I+
Sbjct: 61  PDAIKKAVDDAFKNLIHVTI-KGTTIAHDIEHKYNASRILLKPASEGTGVIAGGSTRPIV 119

Query: 448 HLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIE 480
            LAG K++ +K +GS NP+N V+A F AL  I+
Sbjct: 120 ELAGIKDILTKSLGSNNPYNVVRATFDALAKIK 152


>RS5_HELPJ (P66573) 30S ribosomal protein S5
          Length = 153

 Score =  107 bits (266), Expect = 9e-23
 Identities = 59/153 (38%), Positives = 92/153 (59%), Gaps = 2/153 (1%)

Query: 329 LTEKK-RRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAV 387
           +TE+K    + R+ F   ++N+ R  KV KGG+  ++ A++  GN NG+VGF   K   V
Sbjct: 1   MTERKGMEEINREEFQEVVVNIGRVTKVVKGGRRFRFNALVVVGNKNGLVGFGLGKAKEV 60

Query: 388 PVALQKAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTIL 447
           P A++KA +  F+NL  V   +  TIAH I+  +  +++ L PA   TG+ AG   + I+
Sbjct: 61  PDAIKKAVDDAFKNLIHVTI-KGTTIAHDIEHKYNASRILLKPASEGTGVIAGGSTRPIV 119

Query: 448 HLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIE 480
            LAG K++ +K +GS NP+N V+A F AL  I+
Sbjct: 120 ELAGIKDILTKSLGSNNPYNVVRATFDALAKIK 152


>RS5_XYLFT (Q87E65) 30S ribosomal protein S5
          Length = 179

 Score =  105 bits (263), Expect = 2e-22
 Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 2/173 (1%)

Query: 322 LAEERNELT-EKKRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFA 380
           +AEER++ + ++ R      G   KL+ VNR  K  KGG+   +TA+   GN  G VGF 
Sbjct: 1   MAEERSQRSRDRSREEKIDDGMIEKLVAVNRVSKTVKGGRQFTFTALTIVGNGEGSVGFG 60

Query: 381 KAKGPAVPVALQKAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAG 440
             K   VPVA+QK+ E   + +  V  +   T+ H ++ +     V++ PA   TG+ AG
Sbjct: 61  YGKAREVPVAIQKSMEYARKRMSNVSLNNG-TLWHPVKANHGAASVFMKPASEGTGVIAG 119

Query: 441 RIVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTV 493
             ++ +L   G KNV +K +GSRNP N V+A  K L  +++P  +  K G+ V
Sbjct: 120 GAMRAVLEAVGVKNVLAKAIGSRNPINLVRATLKGLEDMQSPTHIALKRGKNV 172


>RS5_STAAW (P66580) 30S ribosomal protein S5
          Length = 166

 Score =  105 bits (263), Expect = 2e-22
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 1/164 (0%)

Query: 334 RRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQK 393
           RR    K F+ +++ +NR  KV KGG+  ++TA++  G+ NG VGF   K   VP A++K
Sbjct: 3   RREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKK 62

Query: 394 AYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFK 453
           A E   ++L  V R  E T  H I   +    V++ PA   TG+ AG  V+ +L LAG  
Sbjct: 63  AVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGIT 121

Query: 454 NVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKY 497
           ++ SK +GS  P N V+A    L  ++   DV +  G+TV E Y
Sbjct: 122 DILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165


>RS5_STAAN (P66579) 30S ribosomal protein S5
          Length = 166

 Score =  105 bits (263), Expect = 2e-22
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 1/164 (0%)

Query: 334 RRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQK 393
           RR    K F+ +++ +NR  KV KGG+  ++TA++  G+ NG VGF   K   VP A++K
Sbjct: 3   RREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKK 62

Query: 394 AYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFK 453
           A E   ++L  V R  E T  H I   +    V++ PA   TG+ AG  V+ +L LAG  
Sbjct: 63  AVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGIT 121

Query: 454 NVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKY 497
           ++ SK +GS  P N V+A    L  ++   DV +  G+TV E Y
Sbjct: 122 DILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165


>RS5_STAAM (P66578) 30S ribosomal protein S5
          Length = 166

 Score =  105 bits (263), Expect = 2e-22
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 1/164 (0%)

Query: 334 RRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQK 393
           RR    K F+ +++ +NR  KV KGG+  ++TA++  G+ NG VGF   K   VP A++K
Sbjct: 3   RREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKK 62

Query: 394 AYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFK 453
           A E   ++L  V R  E T  H I   +    V++ PA   TG+ AG  V+ +L LAG  
Sbjct: 63  AVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGIT 121

Query: 454 NVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKY 497
           ++ SK +GS  P N V+A    L  ++   DV +  G+TV E Y
Sbjct: 122 DILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165


>RS5_STAEP (Q8CRH7) 30S ribosomal protein S5
          Length = 166

 Score =  105 bits (261), Expect = 4e-22
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 1/164 (0%)

Query: 334 RRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQK 393
           RR    K F+ +++ +NR  KV KGG+  ++TA++  G+ NG VGF   K   VP A++K
Sbjct: 3   RREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKK 62

Query: 394 AYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFK 453
           A E   ++L  V R  E T  H I   +    V++ PA   TG+ AG  V+ +L LAG  
Sbjct: 63  AVEAAKKDLVVVPR-VEGTTPHTITGQYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGIT 121

Query: 454 NVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKY 497
           ++ SK +GS  P N V+A    L  ++   DV +  G++V E Y
Sbjct: 122 DILSKSLGSNTPINMVRATINGLQNLKNAEDVAKLRGKSVEELY 165


>RS5_YERPE (Q8ZJ95) 30S ribosomal protein S5
          Length = 167

 Score =  103 bits (256), Expect = 1e-21
 Identities = 58/151 (38%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
           KLI VNR  K  KGG++  +TA+   G+ NG VGF   K   VP A+QKA EK  + +  
Sbjct: 14  KLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRAMIN 73

Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
           V  +   T+ H ++ +   ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS N
Sbjct: 74  VALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTN 132

Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
           P N V+A   AL  +++P  V  K G++V E
Sbjct: 133 PINVVRATIAALEDMKSPEMVAAKRGKSVEE 163


>RS5_WIGBR (Q8D1Z5) 30S ribosomal protein S5
          Length = 166

 Score =  103 bits (256), Expect = 1e-21
 Identities = 55/149 (36%), Positives = 86/149 (56%), Gaps = 1/149 (0%)

Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
           KLI+VNR  K  KGG++  +TA+   G+  G +GF   K   VP+A+QKA +K  +N+  
Sbjct: 14  KLISVNRVSKTVKGGRIFSFTALTVVGDCQGKIGFGYGKSKEVPLAIQKAMDKARKNMII 73

Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
           +    + T+ H I      ++V++ PA   TG+ AG  ++ +L +AG  NV +KV GS N
Sbjct: 74  IPIVCK-TLQHEINGYHTGSRVFMKPASEGTGIIAGGAMRAVLEVAGVHNVLAKVYGSTN 132

Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTV 493
           P N V+A   AL  +  P  + EK G+++
Sbjct: 133 PINVVRATVNALKKMRFPMHIAEKRGKSI 161


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.315    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,794,536
Number of Sequences: 164201
Number of extensions: 2717337
Number of successful extensions: 14103
Number of sequences better than 10.0: 416
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 13268
Number of HSP's gapped (non-prelim): 855
length of query: 499
length of database: 59,974,054
effective HSP length: 114
effective length of query: 385
effective length of database: 41,255,140
effective search space: 15883228900
effective search space used: 15883228900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)