BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0253.14
(346 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y266_ARCFU (O29973) Hypothetical transport protein AF0266 41 0.005
Y687_HAEIN (P71356) Hypothetical transport protein HI0687 39 0.015
YXFA_LACLA (Q9CDF7) Putative sugar uptake protein yxfA 38 0.043
YBFH_BACSU (O31448) Hypothetical transport protein ybhF 37 0.056
YOAV_BACSU (O34416) Hypothetical transport protein yoaV 37 0.096
YCB6_PSEDE (P29939) Hypothetical transport protein in cobO 3'reg... 36 0.16
YCXC_BACSU (Q08794) Hypothetical transport protein ycxC 35 0.21
YVBV_BACSU (O32256) Hypothetical transport protein yvbV 35 0.28
YCAY_CLOKL (P38943) Hypothetical transport protein in cat1 5'reg... 35 0.36
Y154_SYNY3 (Q55575) Hypothetical UPF0052 protein sll0154 33 1.4
GLPF_STRCO (P19255) Probable glycerol uptake facilitator protein 32 1.8
EAAT_ONCVO (Q25605) Excitatory amino acid transporter (Sodium-de... 32 1.8
YM98_ANASP (O52750) Hypothetical UPF0052 protein alr2298 32 2.4
PAQ9_MOUSE (Q6TCG2) Progestin and adipoQ receptor family member IX 32 2.4
YTR1_BUCSC (Q44601) Hypothetical transport protein in trpA 3'region 32 3.1
PAQ9_HUMAN (Q6ZVX9) Progestin and adipoQ receptor family member IX 31 4.0
B3A4_HUMAN (Q96Q91) Anion exchange protein 4 (Anion exchanger 4)... 31 4.0
ATPD_PROMO (P29708) ATP synthase delta chain, sodium ion specifi... 31 4.0
YYAM_BACSU (P37511) Hypothetical transport protein yyaM 31 5.2
EAMA_ECOLI (P31125) Probable amino acid metabolite efflux pump 31 5.2
>Y266_ARCFU (O29973) Hypothetical transport protein AF0266
Length = 276
Score = 40.8 bits (94), Expect = 0.005
Identities = 52/250 (20%), Positives = 109/250 (42%), Gaps = 42/250 (16%)
Query: 54 KITMKVLFQAFLCGLFGATIQQNLF----------VEGVALAGATYATAMLERLNIKTKT 103
+I K L + F G+FG ++ V V ++ A +L + ++ +
Sbjct: 54 RIKWKDLPKVFALGIFGVSVYHVFLNLGEVYISSGVASVVISLAPIFVLILSAIFLRERI 113
Query: 104 GKAKVLGPLVGVSGAMILTFYRSIEIHLWPTIVNLMKNKPKNAATSHIFGTSLAFGTCLS 163
+KV+G ++ G ++++ + ++I+G +L + ++
Sbjct: 114 TYSKVVGIIIAFLGVVVIS----------------------EPSYANIYGIALVMVSTVA 151
Query: 164 YSIWLIIQARMSAKF-PWHYTSAALMSVMACIQSTIFAVCMERDNWSRWKLGWNIKLF-T 221
+I+ + +K+ P TS A+ V+ I F R LG ++ L +
Sbjct: 152 AAIYTTFGKSLLSKYNPITLTSNAM--VLGSIPLYPFLPDSIRS------LGGDLNLIGS 203
Query: 222 AVYVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGAL 281
V++G+ ++ ++ + L + AS F V+ +AG++ L E L L +V G+
Sbjct: 204 IVFLGIFSTFFGYLGWYYFLEKEEASRASVFLLAIPVVSLLAGNILLAEPLTLRTVAGSG 263
Query: 282 LIVLGLYIVL 291
L++LG+YIV+
Sbjct: 264 LVLLGIYIVV 273
>Y687_HAEIN (P71356) Hypothetical transport protein HI0687
Length = 304
Score = 39.3 bits (90), Expect = 0.015
Identities = 54/268 (20%), Positives = 108/268 (40%), Gaps = 50/268 (18%)
Query: 52 KPKITMKVLFQAFLCGLFGATIQQNLFVEGV----ALAGATYATAML------------- 94
+PKI + + F+ G+F T F+ G+ ALAG+ + +
Sbjct: 64 EPKIILYLFIYLFILGIF-MTGNMFFFINGLKYTSALAGSIFGILAMPLAIIIAGIFFKD 122
Query: 95 ERLNIKTKTGKAKVLGPLVGVSGAMILTFYRSIEIHLWPTIVNLMKNKPKNAATSHIFGT 154
ER I+ K +G L+ + G++I ++N N + T G
Sbjct: 123 ERDRIRQKEF---YIGELLAIIGSLIF-------------VINSSNN---DGNTDFFLGA 163
Query: 155 SLAFGTCLSYSIWLIIQARMSAKFPWHYTSAALMSVMACIQSTIFAVCMERDNWSRWKLG 214
F S+ +I +++ K +A ++S S + +C+ + + L
Sbjct: 164 IFLFTAIFIQSVQNLIVKKVAKKI-----NAVVISASTATISGVLFLCLAFNTKQIYLLQ 218
Query: 215 WNIKLFTAVYVGVVASGIPWVLTA-----WVLRLKGPLYASSFNPLFLVIVAIAGSLFLD 269
+ + +G+V +G +LT ++++ +G + L + AI G L LD
Sbjct: 219 ---DVGIGMLIGLVCAGFYGMLTGMLMAFYIVQKQGITVFNILQLLIPLSTAIIGYLTLD 275
Query: 270 EKLYLGSVIGALLIVLGLYIVLWGKGKE 297
E++ + I +++++G + L K KE
Sbjct: 276 ERINIYQGISGIIVIIGCVLALKRKNKE 303
>YXFA_LACLA (Q9CDF7) Putative sugar uptake protein yxfA
Length = 295
Score = 37.7 bits (86), Expect = 0.043
Identities = 65/284 (22%), Positives = 114/284 (39%), Gaps = 53/284 (18%)
Query: 38 AFMVPLAYFVERERKPKITMKVLFQAFLCGLFGATIQQNLFVEGVALAGATYATAMLERL 97
AF+ L F+ R P +T ++ F+ GL A Q F + G + A+ +
Sbjct: 39 AFVFALIVFLFR--MPTLTWQIFLIGFIGGLLWAIGQFGQF-NSMKYMGVSVASPL---- 91
Query: 98 NIKTKTGKAKVLGPLVGV------------------SGAMILTFYRSIEIHLWPTIVNLM 139
+G V+G L+GV +++ FY S + +V
Sbjct: 92 ----SSGSQLVIGGLIGVFAFHEWTKQIQFILGFIAMAVLVVGFYFSAKRDPENAVVEEG 147
Query: 140 KNKPKNAATSHIFGTSLAFGTCLSYSIWLIIQARMSAK-FPWHYTSAALMSVMACIQSTI 198
+N K T+L + T L Y I++I+ ++ F H+ + ++ M+ I
Sbjct: 148 RNYTKGL-------TALTYST-LGYVIYVILFNNLAVLWFNVHFDTLTIILPMSV--GMI 197
Query: 199 FAVCMERDNWSRWKLGWNIKLFTAVYVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLV 258
F + R+K+ ++ + VG + G+ + G A SF+ L ++
Sbjct: 198 FGALV----MGRFKIKMEKYVYQNMIVGAMW-GVGNIFMLMAASAAGNAIAFSFSQLGVI 252
Query: 259 IVAIAGSLFLDEK------LYLGSVIGALLIVLGLYIVLWGKGK 296
+ I G LFL EK +Y+G IG +L V G ++ K K
Sbjct: 253 VSTIGGILFLGEKKTKKELVYVG--IGIVLFVTGAILLAIVKSK 294
>YBFH_BACSU (O31448) Hypothetical transport protein ybhF
Length = 306
Score = 37.4 bits (85), Expect = 0.056
Identities = 54/240 (22%), Positives = 101/240 (41%), Gaps = 42/240 (17%)
Query: 67 GLFGATIQQNLFVEGVALAGATYA-------------TAMLERLNIK-TKTGKAKVLGPL 112
GLFG T+ +E +AL TYA TA+L ++ K ++G +
Sbjct: 74 GLFGVTLY--FLLENIALT-YTYASNVGMIVSIIPMITAVLAHFLLEGEKLRLTFLIGFI 130
Query: 113 VGVSGAMILTFYRSIEIHLWPTIVNLMKNKPKNAATSHIFGTSLAFGTCLSYSIWLIIQA 172
+ G +++TF ++ + L P G +A G L + + I
Sbjct: 131 SALIGLLLITFNGNVVLRLNP------------------LGDIMAAGAALVFGGYSIFMK 172
Query: 173 RMSAKFPWHY---TSAALMSVMACIQSTIFAVCMERDNWSRWKLGWNIKLFTAVYVGVVA 229
++SA + +H T + + + +F D SR+ NI +++G+ A
Sbjct: 173 KLSA-YEYHIIELTQRVFLYGLLFMVPALFLFDFHFD-LSRFSSASNI--LNMLFLGIGA 228
Query: 230 SGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGALLIVLGLYI 289
S + + + + + G + +S++ + VI A L L E + +++G L +LGLYI
Sbjct: 229 SALCFATWNYSVGVLGAVKSSAYIYMVPVITIAASVLILHENMTWIALLGGALTLLGLYI 288
>YOAV_BACSU (O34416) Hypothetical transport protein yoaV
Length = 292
Score = 36.6 bits (83), Expect = 0.096
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 145 NAATSHIFGTSLAFGTCLSYSIWLIIQARMSAKFPWHYTSAALMS----VMACIQSTIFA 200
N S +FG LS+ I A + +K + + M+ +M + +F+
Sbjct: 142 NIDQSALFGELCVLVAALSWGI-----ANVFSKLQFKHIDIIHMNAWHLMMGAVMLLVFS 196
Query: 201 VCMERDNWSRWKLGWNIKLFTAVYVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLVIV 260
E + W +++ ++ G++++G +V+ WVL AS V+
Sbjct: 197 FIFEAVPSAEWTYQ---AVWSLLFNGLLSTGFTFVVWFWVLNQIQASKASMALMFVPVLA 253
Query: 261 AIAGSLFLDEKLYLGSVIGALLIVLGLYI 289
G L L E++ + ++GALLI G+++
Sbjct: 254 LFFGWLQLHEQITINIILGALLICCGIFM 282
>YCB6_PSEDE (P29939) Hypothetical transport protein in cobO 3'region
(ORF6)
Length = 141
Score = 35.8 bits (81), Expect = 0.16
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 228 VASGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGALLIVLGL 287
+A+G W+ L+L + + L +V+VAI G LFL EKL L + +G I G
Sbjct: 76 LATGASWLAYFRALKLGDAARVAPLDKLSIVMVAIFGVLFLGEKLNLMNWLGVAFIAAGA 135
Query: 288 YIV 290
++
Sbjct: 136 LLL 138
>YCXC_BACSU (Q08794) Hypothetical transport protein ycxC
Length = 312
Score = 35.4 bits (80), Expect = 0.21
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 223 VYVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGALL 282
VY+GV++S + L+ + L S+FN + ++ IAG + L+E L + GA+
Sbjct: 228 VYLGVLSSLVTSFLSNYTLSRIEAFKMSAFNHVSTIVTMIAGFVILNESLAWYHLAGAVC 287
Query: 283 IVLGL 287
I++G+
Sbjct: 288 IMIGV 292
>YVBV_BACSU (O32256) Hypothetical transport protein yvbV
Length = 305
Score = 35.0 bits (79), Expect = 0.28
Identities = 28/141 (19%), Positives = 63/141 (43%), Gaps = 6/141 (4%)
Query: 151 IFGTSLAFGTCLSYSIWLIIQARMSAKFPWHYTSAALMSVMACIQSTIFAVCMERDNWSR 210
+ G LA G+ +S+++ + + ++ + A +++ ++F + S
Sbjct: 150 VIGVLLALGSAVSWALGTVYMKKTGSRVDSIWMVALQLTI-----GSVFLLISGFWTESF 204
Query: 211 WKLGWNIKLFTAV-YVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLD 269
+ W T++ ++ V + W++ ++ +S+ L +I +A S+FL
Sbjct: 205 SAIQWTAPFITSLLFISVFVIALGWLVFFTLVGSGEASKVASYTFLIPLISIVASSIFLH 264
Query: 270 EKLYLGSVIGALLIVLGLYIV 290
E L L + G LLIV + +V
Sbjct: 265 EPLTLSLLAGLLLIVTSICLV 285
>YCAY_CLOKL (P38943) Hypothetical transport protein in cat1 5'region
(ORFY)
Length = 311
Score = 34.7 bits (78), Expect = 0.36
Identities = 52/291 (17%), Positives = 111/291 (37%), Gaps = 11/291 (3%)
Query: 1 MVLIQFIFAGVSILFKLVASTG-MSLTVLMAYRYFFSSAFMVPLAYFVERERKPKITMKV 59
++L ++ I K++A G M +M + + ++P+A + +K K+T
Sbjct: 8 ILLTAIFYSTQEISGKMLAQKGAMDPFQVMMIVFLIGAIILLPMAVKDIKVKKLKLTGND 67
Query: 60 LFQAFLCGLFGATIQQNLFVEGVALAGATYATAMLERLNIKTKTGKAKVLGPLV-GVSGA 118
L LCG+ +I ++ V A+ A + + T +L + G++
Sbjct: 68 LGYLALCGILAVSISMSMLQFAVTYTKASTAAVLFCTNAVFTIPFAYFILKEKIKGITIV 127
Query: 119 MILTFYRSIEIHLWPTIVNLMKNKPKNAATSHIFGTSLAFGTCLSYSIWLIIQARMSAKF 178
I+ + I I N K + + G A + +S++ +I ++ +
Sbjct: 128 SIIVSLIGVVI-----IFNPAKVMEGIGGSRDLIGICFALVAAVVWSLYTVI-SKKRIEI 181
Query: 179 PWHYTSAALMSVMACIQSTIFAVCMERDNWSRWKLGWNIKLFTAVYVGVVASGIPWVLTA 238
Y + I I V R +S L + +Y+G+ + ++
Sbjct: 182 YGGYVFNCISFFFGVIALLILLVVTGRPIFSGITLN---NILVLLYMGIFIKAVGYICYL 238
Query: 239 WVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGALLIVLGLYI 289
++ + AS+ + + + L L E + + VIG + I++G I
Sbjct: 239 GAIKETSAVTASTVFLIKPALATVLAILILGESIEVNVVIGIVFIIIGSII 289
>Y154_SYNY3 (Q55575) Hypothetical UPF0052 protein sll0154
Length = 462
Score = 32.7 bits (73), Expect = 1.4
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 206 DNWSRWKLGWNIKLFTAVYVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGS 265
+ W +W LF ++ + A G+ + + +K P+F + ++ +
Sbjct: 36 NRWFKWMAPG---LFVKRWMVISAVGLTLMFLGLAIWVK-------LTPIFRITEFVSDT 85
Query: 266 LFLDEKLYLGSVIGALLIVLGLYIVLWGKGKELKSNVEQKHKNDPLEEVEPL 317
L L V G L++ LGL+ V WG+ + + S E ++ E V+ L
Sbjct: 86 LGFLTNLLPNYVSGPLILALGLFFVFWGQSRTVGSISEVLQPDNDQELVDVL 137
>GLPF_STRCO (P19255) Probable glycerol uptake facilitator protein
Length = 264
Score = 32.3 bits (72), Expect = 1.8
Identities = 25/101 (24%), Positives = 37/101 (35%), Gaps = 23/101 (22%)
Query: 193 CIQSTIFAVCMERDNWSRWKLGWNIKLFTAVYVGVVASGIPWVLTAWVLRLKGPLYASSF 252
C T+ A W GW + TA Y+ GPL +
Sbjct: 25 CAAVTLKASKARNAGWLAIAFGWGFAVMTAAYI------------------SGPLSGAHL 66
Query: 253 NPLFLVIVAIAGSLFLDEKLY-----LGSVIGALLIVLGLY 288
NP V +AI + + Y LG++IGA+L+ + Y
Sbjct: 67 NPAVTVGIAIKDGDWSNTPTYFAGQLLGAMIGAVLVWVAYY 107
>EAAT_ONCVO (Q25605) Excitatory amino acid transporter
(Sodium-dependent glutamate/ aspartate transporter)
Length = 492
Score = 32.3 bits (72), Expect = 1.8
Identities = 16/48 (33%), Positives = 27/48 (55%)
Query: 37 SAFMVPLAYFVERERKPKITMKVLFQAFLCGLFGATIQQNLFVEGVAL 84
S +PL +FV ++ P + M+ LFQA++ GL A+ L + + L
Sbjct: 280 SLISLPLIFFVTTKKNPYVFMRGLFQAWITGLGTASSSDTLPITYICL 327
>YM98_ANASP (O52750) Hypothetical UPF0052 protein alr2298
Length = 456
Score = 32.0 bits (71), Expect = 2.4
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 206 DNWSRW-KLGWNIKLFTAVYVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAG 264
+ W +W G +IK + + VG V I L WV P+F ++ + G
Sbjct: 26 NQWFKWLSPGLSIKRWLLISVGGVLLAILG-LAIWV----------KLTPIFWLLELVRG 74
Query: 265 SLFLDEKLYLGSVIGALLIVLGLYIVLWGKGKELKS 300
L + + G L+I+ GL ++LWG+ + + S
Sbjct: 75 FLGAVANILPNYISGPLVILGGLLLLLWGQTRTVGS 110
>PAQ9_MOUSE (Q6TCG2) Progestin and adipoQ receptor family member IX
Length = 375
Score = 32.0 bits (71), Expect = 2.4
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 34/176 (19%)
Query: 111 PLVGVSGAMILTFYRSIEIHLWPTIVNLMKNKPKNAATSHIFGTSLA---FGTCLSYSIW 167
PL + ++LTF S H++ + ++ AA ++ S++ FG+ ++Y +
Sbjct: 119 PLWCYASGVLLTFAMSCTAHVFSCLSLRLR-----AAFFYLDYASISYYGFGSTVAYYYY 173
Query: 168 LI-----IQARMSAKFP-----WHYTSAALMSVMACIQSTI---------FAVCMERDNW 208
L+ + AR+ + WH L++V + + A C R +W
Sbjct: 174 LLPSLSLLDARVMTPYVQQRLGWHVDCTRLIAVYRALVLPVAFVLAVACTVACCKSRTDW 233
Query: 209 SRWKLGWNIKLFTAVYVGVVASGIPWVLTAWVLRLKG---PLYASSFNPLFLVIVA 261
+ L T V+V ++ P +L +W+ L+G L+ + F ++VA
Sbjct: 234 CSYPFA----LRTFVFVMPLSMACPIMLESWLFDLRGENPTLFVHFYRRYFWLVVA 285
>YTR1_BUCSC (Q44601) Hypothetical transport protein in trpA 3'region
Length = 304
Score = 31.6 bits (70), Expect = 3.1
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 216 NIKLFTAVYVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLG 275
N K+F + + + +P++L + R AS + +IV +F ++KLY
Sbjct: 65 NKKIFQLI-ICIFYFSLPFLLILYGGRYVNSTIASVIFAIMPIIVLFLSFIFFNKKLYFF 123
Query: 276 SVIGALLIVLGLYIVLWGKGKELKSNVEQKHK 307
IG +L ++ L I+L+ KE++ E+ K
Sbjct: 124 QFIGLVLAIIFLSIILF---KEIELGDEKTIK 152
>PAQ9_HUMAN (Q6ZVX9) Progestin and adipoQ receptor family member IX
Length = 377
Score = 31.2 bits (69), Expect = 4.0
Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 34/176 (19%)
Query: 111 PLVGVSGAMILTFYRSIEIHLWPTIVNLMKNKPKNAATSHIFGTSLA---FGTCLSYSIW 167
PL + ++LTF S H++ + ++ AA ++ S++ FG+ ++Y +
Sbjct: 121 PLWCYASGVLLTFAMSCTAHVFSCLSLRLR-----AAFFYLDYASISYYGFGSTVAYYYY 175
Query: 168 LI-----IQAR-----MSAKFPWH---------YTSAALMSVMACIQSTIFAVCMERDNW 208
L+ + AR + + WH Y + L + A C R +W
Sbjct: 176 LLPGLSLLDARVMTPYLQQRLGWHVDCTRLIAAYRALVLPVAFVLAVACTVACCKSRTDW 235
Query: 209 SRWKLGWNIKLFTAVYVGVVASGIPWVLTAWVLRLKG---PLYASSFNPLFLVIVA 261
+ L T V+V ++ P +L +W+ L+G L+ + F ++VA
Sbjct: 236 CTYPFA----LRTFVFVMPLSMACPIMLESWLFDLRGENPTLFVHFYRRYFWLVVA 287
>B3A4_HUMAN (Q96Q91) Anion exchange protein 4 (Anion exchanger 4)
(Sodium bicarbonate cotransporter 5)
Length = 983
Score = 31.2 bits (69), Expect = 4.0
Identities = 21/73 (28%), Positives = 39/73 (52%), Gaps = 8/73 (10%)
Query: 179 PWHYTSAA-----LMSVMACIQSTIFAVCMERDNWSRWK-LGWNIKLFTAVYVGVVAS-- 230
PW ++ AA L+S++ + I AV + R + K G+++ LF + ++ S
Sbjct: 712 PWWWSVAAALPALLLSILIFMDQQITAVILNRMEYRLQKGAGFHLDLFCVAVLMLLTSAL 771
Query: 231 GIPWVLTAWVLRL 243
G+PW ++A V+ L
Sbjct: 772 GLPWYVSATVISL 784
>ATPD_PROMO (P29708) ATP synthase delta chain, sodium ion specific
(EC 3.6.3.15)
Length = 174
Score = 31.2 bits (69), Expect = 4.0
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 20/109 (18%)
Query: 242 RLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGALLIVLGLYIVLWGKGKELKSN 301
++ G L SS N +F +I EK L S+ G + L +Y + K + L +
Sbjct: 64 KIFGELEESSLNIIFYLI----------EKDRLSSIRGIVAEYLKIY---YAKNQIL--D 108
Query: 302 VEQKHKNDPLEE-----VEPLEIVTTKQINGKSADDKSVDDGNDIKCGD 345
VE +P ++ +E LE T K++N + + DKS+ G IK GD
Sbjct: 109 VEAIFAIEPTKDQKAKLIEQLEKKTGKKVNLEVSIDKSIIAGGIIKIGD 157
>YYAM_BACSU (P37511) Hypothetical transport protein yyaM
Length = 305
Score = 30.8 bits (68), Expect = 5.2
Identities = 67/299 (22%), Positives = 116/299 (38%), Gaps = 34/299 (11%)
Query: 1 MVLIQFIFAGVSILFKLVASTGMSLTVLMAYRYFFSSAFMVPLAYFVERERKPKITMKVL 60
M+L IF G + S + A+R+ ++A M+ + F E +K ++ +
Sbjct: 9 MLLGFSIFTGATFNLAKYTVGYFSPSSSAAWRFGLAAAVMLIILIFTEGIKKSQLRKNAV 68
Query: 61 FQAFL--CGLFGAT------IQQNLFVEGVALAGAT-YATAMLERLNIKTKTGKAKVLGP 111
L G+FG ++ V G + G TA+L R+ +K K +VLG
Sbjct: 69 SYIVLGIIGIFGFNALFFVGLKYTSPVNGALIMGLNPLLTAILARIILKDNMTKKQVLGI 128
Query: 112 LVGVSGAMILTFYRSIEIHLWPTIVNLMKNKPKNAATSHIFGTSLAFGTCLSYSIWLIIQ 171
G +++ SIE TI L S G + F + ++++ ++
Sbjct: 129 FFAFIGVLLVITQGSIE-----TIKTL----------SISGGDLIIFTGNVCWALYGVLG 173
Query: 172 ARMSAKFPWHYTSAALMSVMACIQSTIFAVCMERDNWSRWKLG-WNIKLFTAVYVGVVAS 230
R T+ M + A + + + S +G W F A + V+
Sbjct: 174 RRFVKDGTPLSTTTYTMVIGAVSLIVVSLFTSKPVSLSNIPIGVWGAIAFMAFFTSVL-- 231
Query: 231 GIPWVLTAWVLRLK--GPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGALLIVLGL 287
G W W +K G S F L V+ I S + + + VIGA+L++LG+
Sbjct: 232 GYLW----WNQGIKEIGASKTSLFFNLVPVVTMII-SFAVGTPIKVFQVIGAVLVILGV 285
>EAMA_ECOLI (P31125) Probable amino acid metabolite efflux pump
Length = 299
Score = 30.8 bits (68), Expect = 5.2
Identities = 20/75 (26%), Positives = 40/75 (52%)
Query: 219 LFTAVYVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVI 278
+ + +Y+ VA+ + + + +L + + L V+ + +L LDE+L +
Sbjct: 214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFL 273
Query: 279 GALLIVLGLYIVLWG 293
GA+LI+ GLYI ++G
Sbjct: 274 GAVLIMTGLYINVFG 288
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,588,932
Number of Sequences: 164201
Number of extensions: 1495578
Number of successful extensions: 5153
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5138
Number of HSP's gapped (non-prelim): 36
length of query: 346
length of database: 59,974,054
effective HSP length: 111
effective length of query: 235
effective length of database: 41,747,743
effective search space: 9810719605
effective search space used: 9810719605
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0253.14