BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252b.2
(515 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ELV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (El... 51 8e-06
ELV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR) 50 1e-05
SXL_CHRRU (O97018) Sex-lethal protein homolog 49 3e-05
RNP2_MOUSE (Q8VH51) RNA-binding region containing protein 2 (Coa... 49 4e-05
RNP2_HUMAN (Q14498) RNA-binding region containing protein 2 (Hep... 49 4e-05
RNP4_HUMAN (Q86U06) RNA-binding region containing protein 4 (Spl... 47 9e-05
ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur... 47 2e-04
MINT_MOUSE (Q62504) Msx2-interacting protein (SMART/HDAC1 associ... 47 2e-04
MINT_HUMAN (Q96T58) Msx2-interacting protein (SMART/HDAC1 associ... 47 2e-04
GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon... 47 2e-04
ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec... 46 2e-04
RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA 46 3e-04
SXL_MEGSC (O01671) Sex-lethal protein homolog 45 3e-04
ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor 45 3e-04
GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A 45 3e-04
ELV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalom... 45 3e-04
ELV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephal... 45 3e-04
YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i... 45 4e-04
SXL_DROME (P19339) Sex-lethal protein 45 4e-04
RBM8_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA binding motif pr... 45 4e-04
>ELV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR)
(Elav-like generic protein) (MelG)
Length = 326
Score = 50.8 bits (120), Expect = 8e-06
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 42.0 bits (97), Expect = 0.004
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ +A+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 36.6 bits (83), Expect = 0.16
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
G + G+S ++V A P +
Sbjct: 167 FIGHKPPGSSEPITVKFAANPNQ 189
>ELV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)
Length = 326
Score = 50.4 bits (119), Expect = 1e-05
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.002
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.055
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>SXL_CHRRU (O97018) Sex-lethal protein homolog
Length = 307
Score = 48.9 bits (115), Expect = 3e-05
Identities = 49/197 (24%), Positives = 83/197 (41%), Gaps = 14/197 (7%)
Query: 7 AGLGSAVGDGVDVGDEAADEEDGST-----PNQKCSGVSRVCVSLFVDGIAESVSYHQIR 61
+G GSA+G ++ + S NQ C+G + L V+ + + ++ ++
Sbjct: 48 SGGGSAMGSMCNMAPAISTNSVNSGGGDCGDNQGCNGTN-----LIVNYLPQDMTDRELY 102
Query: 62 GLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAK 121
LF G + + + K G F + FV F S A AIKSL+GV + L V A+
Sbjct: 103 ALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYAR 162
Query: 122 PPQKVVSRSDAKVANVCSVIKKVDGSSGLTGKRKESVSGPFISSWRDVVVGNTKGSRLVS 181
P + + ++ V N+ I D + GK V + RD + G +G V
Sbjct: 163 PGGESIKDTNLYVTNLPRTITD-DELEKIFGKYGNIVQKNIL---RDKLTGKPRGVAFVR 218
Query: 182 FAEDVKMMAYVPWLTNL 198
F + + + L N+
Sbjct: 219 FNKREEAQEAISALNNV 235
Score = 38.1 bits (87), Expect = 0.055
Identities = 25/84 (29%), Positives = 45/84 (52%), Gaps = 2/84 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L+V + +++ ++ +F ++G +V + R K G+ FVRF + A AI +
Sbjct: 172 NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISA 231
Query: 105 LDGVRLGGAS--LSVGLAKPPQKV 126
L+ V GAS L+V LA+ K+
Sbjct: 232 LNNVIPEGASQPLTVRLAEEHGKM 255
>RNP2_MOUSE (Q8VH51) RNA-binding region containing protein 2
(Coactivator of activating protein-1 and estrogen
receptors) (Coactivator of AP-1 and ERs) (Transcription
coactivator CAPER)
Length = 530
Score = 48.5 bits (114), Expect = 4e-05
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
L+V + +++ +RG+F FGR+ ++ + + GR +GF+ F+ + A A++ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 106 DGVRLGGASLSVGLAKPPQKVVSRSDAKVAN 136
+G L G + VG V R+DA A+
Sbjct: 312 NGFELAGRPMKVG------HVTERTDASSAS 336
>RNP2_HUMAN (Q14498) RNA-binding region containing protein 2
(Hepatocellular carcinoma protein 1) (Splicing factor
HCC1)
Length = 530
Score = 48.5 bits (114), Expect = 4e-05
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
L+V + +++ +RG+F FGR+ ++ + + GR +GF+ F+ + A A++ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 106 DGVRLGGASLSVGLAKPPQKVVSRSDAKVAN 136
+G L G + VG V R+DA A+
Sbjct: 312 NGFELAGRPMKVG------HVTERTDASSAS 336
>RNP4_HUMAN (Q86U06) RNA-binding region containing protein 4
(Splicing factor SF2) (PP239)
Length = 439
Score = 47.4 bits (111), Expect = 9e-05
Identities = 21/73 (28%), Positives = 41/73 (55%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
L+V + +++ +RG+F FG++ N+ + + GR +GF+ F+ + A A++ L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 106 DGVRLGGASLSVG 118
+G L G + VG
Sbjct: 325 NGFELAGRPMRVG 337
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor
(CP-RBP30)
Length = 279
Score = 46.6 bits (109), Expect = 2e-04
Identities = 33/111 (29%), Positives = 49/111 (43%), Gaps = 10/111 (9%)
Query: 15 DGVDVGDEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVF 74
+ V+ GDE +EE +P+ K +FV + S + LF + G + V
Sbjct: 68 EDVEDGDEGVEEERNFSPDLK----------IFVGNLLFSADSAALAELFERAGNVEMVE 117
Query: 75 VQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQK 125
V K GR FGFV +S + A + +G L G +L V PP+K
Sbjct: 118 VIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEK 168
Score = 46.2 bits (108), Expect = 2e-04
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
++V +A V + LF++ G++V+ V + GR FGFV ++S + AI+SL
Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255
Query: 106 DGVRLGGASLSV--GLAKPPQK 125
DGV L G ++ V A+PP++
Sbjct: 256 DGVDLNGRAIRVSPAEARPPRR 277
>MINT_MOUSE (Q62504) Msx2-interacting protein (SMART/HDAC1
associated repressor protein)
Length = 3644
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+LF+ + ++ +YH +R +F +FG +V++ + KK+ ++ F+++ AIK
Sbjct: 440 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDI---KKVNGVPQYAFLQYCDIASVCKAIKK 496
Query: 105 LDGVRLGGASLSVGLAK 121
+DG LG L +G K
Sbjct: 497 MDGEYLGNNRLKLGFGK 513
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SMART/HDAC1
associated repressor protein)
Length = 3664
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+LF+ + ++ +YH +R +F +FG +V++ + KK+ ++ F+++ AIK
Sbjct: 439 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDI---KKVNGVPQYAFLQYCDIASVCKAIKK 495
Query: 105 LDGVRLGGASLSVGLAK 121
+DG LG L +G K
Sbjct: 496 MDGEYLGNNRLKLGFGK 512
Score = 32.3 bits (72), Expect = 3.0
Identities = 19/75 (25%), Positives = 36/75 (47%), Gaps = 6/75 (8%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+++DG++ +VS + F ++G +V V R K + V + + A A+K
Sbjct: 519 VWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMA------LVLYNEIEYAQAAVKET 572
Query: 106 DGVRLGGASLSVGLA 120
G ++GG + V A
Sbjct: 573 KGRKIGGNKIKVDFA 587
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2)
Length = 158
Score = 46.6 bits (109), Expect = 2e-04
Identities = 30/94 (31%), Positives = 43/94 (44%), Gaps = 1/94 (1%)
Query: 28 DGSTPNQKCSGVSRVC-VSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFR 86
+G+ P G R+ LF+ G++ +R FA FG +V+ V ++ GR
Sbjct: 18 NGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRG 77
Query: 87 FGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLA 120
FGFV F A AI +DG L G + V A
Sbjct: 78 FGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast
precursor (CP29A)
Length = 273
Score = 46.2 bits (108), Expect = 2e-04
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
++V +A V + LF++ G++V+ V + GR FGFV ++S + AI+SL
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249
Query: 106 DGVRLGGASLSV--GLAKPPQK 125
DGV L G ++ V A+PP++
Sbjct: 250 DGVDLNGRAIRVSPAEARPPRR 271
Score = 45.4 bits (106), Expect = 3e-04
Identities = 32/111 (28%), Positives = 49/111 (43%), Gaps = 10/111 (9%)
Query: 15 DGVDVGDEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVF 74
+ V+ GD+ +EE +P+ K +FV + S + LF + G + V
Sbjct: 68 EDVEDGDDGVEEERNFSPDLK----------IFVGNLPFSADSAALAELFERAGNVEMVE 117
Query: 75 VQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQK 125
V K GR FGFV +S + A + +G L G +L V PP+K
Sbjct: 118 VIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEK 168
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA
Length = 101
Score = 45.8 bits (107), Expect = 3e-04
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 44 VSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIK 103
+S++V ++ VS + +FA++G + V + ++ GR FGFV + AI+
Sbjct: 1 MSIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIE 60
Query: 104 SLDGVRLGGASLSVGLAKP 122
+LDG G L V AKP
Sbjct: 61 ALDGAEWMGRDLKVNKAKP 79
>SXL_MEGSC (O01671) Sex-lethal protein homolog
Length = 321
Score = 45.4 bits (106), Expect = 3e-04
Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 30 STPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGF 89
++ N SG + +L V+ + + + ++ LF G + + R K G + +GF
Sbjct: 64 NSTNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGF 123
Query: 90 VRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVDGSSG 149
V F S A AI +L+G+ + + V A+P + + ++ V N+ S
Sbjct: 124 VDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTNLYVTNL---------SRS 174
Query: 150 LTGKRKESVSGPF-----ISSWRDVVVGNTKGSRLVSFAEDVKMMAYVPWLTNLEGFDDC 204
+T ++ E++ G + + RD G +G + F + + + L N+
Sbjct: 175 ITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGT 234
Query: 205 CKMELRIPDE 214
+ +R+ +E
Sbjct: 235 QPLTVRVAEE 244
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor
Length = 324
Score = 45.4 bits (106), Expect = 3e-04
Identities = 33/123 (26%), Positives = 58/123 (46%), Gaps = 9/123 (7%)
Query: 11 SAVGDGVDVGDE---------AADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIR 61
++V DGV+V E A +EE+ ++ S L+V + S++ Q+
Sbjct: 72 ASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLS 131
Query: 62 GLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAK 121
+FA+ G + NV + + R F FV S + A AI+ DG ++GG ++ V +
Sbjct: 132 EIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE 191
Query: 122 PPQ 124
P+
Sbjct: 192 VPR 194
Score = 30.8 bits (68), Expect = 8.8
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
L+V ++ +++ +R FA ++ V + GR FGF+ F+S + A+ ++
Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278
Query: 106 DGVRLGGASLSVGLA 120
+ V L G L + +A
Sbjct: 279 NEVELEGRPLRLNVA 293
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A
Length = 169
Score = 45.4 bits (106), Expect = 3e-04
Identities = 26/75 (34%), Positives = 40/75 (52%)
Query: 47 FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
FV G+A + + F+QFG LV+ + ++ GR FGFV F K AI+ ++
Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 107 GVRLGGASLSVGLAK 121
G L G S++V A+
Sbjct: 71 GQDLDGRSITVNEAQ 85
>ELV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic
encephalomyelitis antigen HuD) (Hu-antigen D)
Length = 373
Score = 45.4 bits (106), Expect = 3e-04
Identities = 26/107 (24%), Positives = 53/107 (49%)
Query: 31 TPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFV 90
+P Q + +L V+ + ++++ + R LF G + + + R K G+ +GFV
Sbjct: 26 SPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 91 RFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
+ K A AI +L+G+RL ++ V A+P + ++ V+ +
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 132
Score = 42.4 bits (98), Expect = 0.003
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L+V G+ ++++ ++ LF+Q+GR++ + + G GF+RF A AIK
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LDGVRLGGAS--LSVGLAKPPQKVVSRS 130
L+G + GA+ ++V A P + S++
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQKSSQA 213
Score = 41.6 bits (96), Expect = 0.005
Identities = 27/72 (37%), Positives = 37/72 (50%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV ++ + LF FG + NV V R + FGFV T++ AA+AI SL
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 352 NGYRLGDRVLQV 363
>ELV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic
encephalomyelitis antigen HuD) (Hu-antigen D)
Length = 385
Score = 45.4 bits (106), Expect = 3e-04
Identities = 26/107 (24%), Positives = 53/107 (49%)
Query: 31 TPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFV 90
+P Q + +L V+ + ++++ + R LF G + + + R K G+ +GFV
Sbjct: 38 SPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 97
Query: 91 RFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
+ K A AI +L+G+RL ++ V A+P + ++ V+ +
Sbjct: 98 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 144
Score = 42.4 bits (98), Expect = 0.003
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L+V G+ ++++ ++ LF+Q+GR++ + + G GF+RF A AIK
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 105 LDGVRLGGAS--LSVGLAKPPQKVVSRS 130
L+G + GA+ ++V A P + S++
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSSQA 225
Score = 41.6 bits (96), Expect = 0.005
Identities = 27/72 (37%), Positives = 37/72 (50%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV ++ + LF FG + NV V R + FGFV T++ AA+AI SL
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 364 NGYRLGDRVLQV 375
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in
chromosome I
Length = 297
Score = 45.1 bits (105), Expect = 4e-04
Identities = 31/107 (28%), Positives = 52/107 (47%), Gaps = 1/107 (0%)
Query: 15 DGVDVGDEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVF 74
D VD +E+ D P G + LFV GIA + +++ +F++FG + +V
Sbjct: 73 DEVDPNNEST-ALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 75 VQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAK 121
+ R+ FGF+ F++ + A AI +L+ G L+V AK
Sbjct: 132 IMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178
>SXL_DROME (P19339) Sex-lethal protein
Length = 354
Score = 45.1 bits (105), Expect = 4e-04
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 4/170 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + + ++ ++ LF G + + R K G F + FV FTS + AIK
Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVDGSSGLTGKRKESVSGPFIS 164
L+G+ + L V A+P + + ++ V N+ I D + GK V +
Sbjct: 186 LNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITD-DQLDTIFGKYGSIVQKNIL- 243
Query: 165 SWRDVVVGNTKGSRLVSFAEDVKMMAYVPWLTNLEGFDDCCKMELRIPDE 214
RD + G +G V + + + + L N+ + +R+ +E
Sbjct: 244 --RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEE 291
>RBM8_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA binding motif
protein 8A) (Ribonucleoprotein RBM8A)
Length = 174
Score = 45.1 bits (105), Expect = 4e-04
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 8 GLGSAVGDGVDVGDEAAD-EEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQ 66
G GS G + ++ E+DG P + S + LFV G+ E + I FA+
Sbjct: 39 GFGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWI---LFVTGVHEEATEEDIHDKFAE 95
Query: 67 FGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSV 117
+G + N+ + ++ G + V + ++K A A++ L+G L G +SV
Sbjct: 96 YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 146
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,390,916
Number of Sequences: 164201
Number of extensions: 2820396
Number of successful extensions: 6685
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 6397
Number of HSP's gapped (non-prelim): 331
length of query: 515
length of database: 59,974,054
effective HSP length: 115
effective length of query: 400
effective length of database: 41,090,939
effective search space: 16436375600
effective search space used: 16436375600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0252b.2