BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252a.3
(282 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HO_CHICK (P14791) Heme oxygenase (EC 1.14.99.3) (HO) 60 8e-09
HO_PORPU (P51271) Heme oxygenase (EC 1.14.99.3) 57 4e-08
HO2_RABIT (P43242) Heme oxygenase 2 (EC 1.14.99.3) (HO-2) 57 5e-08
HO2_RAT (P23711) Heme oxygenase 2 (EC 1.14.99.3) (HO-2) 55 1e-07
HO2_MOUSE (O70252) Heme oxygenase 2 (EC 1.14.99.3) (HO-2) 55 2e-07
HO2_HUMAN (P30519) Heme oxygenase 2 (EC 1.14.99.3) (HO-2) 54 3e-07
HO_FUGRU (O73688) Heme oxygenase (EC 1.14.99.3) (HO) 53 1e-06
HO1_PIG (P32394) Heme oxygenase 1 (EC 1.14.99.3) (HO-1) 52 1e-06
HO1_HUMAN (P09601) Heme oxygenase 1 (EC 1.14.99.3) (HO-1) 50 5e-06
HO_GUITH (O78497) Heme oxygenase (EC 1.14.99.3) 48 2e-05
HO1_MOUSE (P14901) Heme oxygenase 1 (EC 1.14.99.3) (HO-1) (P32 p... 47 7e-05
HO1_SYNY3 (P72849) Heme oxygenase 1 (EC 1.14.99.3) 46 1e-04
HO1_RAT (P06762) Heme oxygenase 1 (EC 1.14.99.3) (HO-1) (HSP32) 46 1e-04
HO2_SYNY3 (P74133) Heme oxygenase 2 (EC 1.14.99.3) 45 2e-04
HMUO_CORDI (P71119) Heme oxygenase (EC 1.14.99.3) 41 0.004
HO3_RAT (O70453) Heme oxygenase 3 (EC 1.14.99.3) (HO-3) 40 0.005
HO_RHOVL (O19998) Heme oxygenase (EC 1.14.99.3) 40 0.006
HMGL_TRYBR (P26586) High mobility group protein homolog TDP-1 35 0.27
SYE_STRA3 (Q8E7P2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 33 0.78
FLHF_AQUAE (O67266) Flagellar biosynthesis protein flhF (Flagell... 33 0.78
>HO_CHICK (P14791) Heme oxygenase (EC 1.14.99.3) (HO)
Length = 296
Score = 59.7 bits (143), Expect = 8e-09
Identities = 57/204 (27%), Positives = 94/204 (45%), Gaps = 19/204 (9%)
Query: 82 AMKLHTKDQAKEGEKEVTEPEE-----KAVTKWEPTVDGYLKFLVDSKVVYDTLEK-IVQ 135
+M + KE KEV E E K K + ++ + +Y LE+ I +
Sbjct: 11 SMSQDLSELLKEATKEVHEQAENTPFMKNFQKGQVSLHEFKLVTASLYFIYSALEEEIER 70
Query: 136 DATHPSYAE-FRNTGLERSASLAKDLEWFKEQGYT--IPQPSSPGLNYAQYLRDLSQNDP 192
+ +P YA + L R A+L KDLE+F + IP P + Y + L + + P
Sbjct: 71 NKDNPVYAPVYFPMELHRKAALEKDLEYFYGSNWRAEIPCPEATQ-KYVERLHVVGKKHP 129
Query: 193 QAFICHFYNIYFAHSAGGRMIGKKIAGELL----NNKGLEFYKWDG--DLSQLLQNVRDK 246
+ + H Y Y +GG+++ KKIA + L +GL F+ +DG + ++ Q R +
Sbjct: 130 ELLVAHAYTRYLGDLSGGQVL-KKIAQKALQLPSTGEGLAFFTFDGVSNATKFKQLYRSR 188
Query: 247 LNKVAEQWTREEKNHCLEETEKSF 270
+N A + K LEE +K+F
Sbjct: 189 MN--ALEMDHATKKRVLEEAKKAF 210
>HO_PORPU (P51271) Heme oxygenase (EC 1.14.99.3)
Length = 236
Score = 57.4 bits (137), Expect = 4e-08
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 116 YLKFLVDSKVVYDTLEK-IVQDATHPSYAEFRNTGLERSASLAKDLEWFKEQGY-TIPQP 173
Y K + + VY +E+ I+ + HP+ T L R SLAKDL ++ + I +P
Sbjct: 39 YRKLIANLYFVYSAIEEEILLNKDHPAIKPIYFTELNRKTSLAKDLNYYYGPDWLNIIEP 98
Query: 174 SSPGLNYAQYLRDLSQNDPQAFICHFYNIYFAHSAGGRMIGKKIAGELLN---NKGLEFY 230
SS Y + ++ P+ + H Y Y +GG+++ KKIA +N +G +FY
Sbjct: 99 SSATQVYVNRIHNIGNKQPELLVAHAYTRYLGDLSGGQVL-KKIARGAMNLSDERGTKFY 157
Query: 231 KWD 233
+D
Sbjct: 158 DFD 160
>HO2_RABIT (P43242) Heme oxygenase 2 (EC 1.14.99.3) (HO-2)
Length = 312
Score = 57.0 bits (136), Expect = 5e-08
Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 21/201 (10%)
Query: 92 KEGEKEVTEPEEKAVTKW-EPTVDGYLK---FLVDSKVVYDTL----EKIVQDATHPSYA 143
KEG KE + E TK+ + + G +K F + + +Y T E++ ++ HP++A
Sbjct: 34 KEGTKEAHDRAEN--TKFVKDFLKGNIKKEIFKLATTALYFTYSALEEEMDRNKDHPAFA 91
Query: 144 E-FRNTGLERSASLAKDLEWFKEQGYTIP-QPSSPGLNYAQYLRDLSQNDPQAFICHFYN 201
+ L R +L KD+E+F + + Q S Y + + + QN+P+ + H Y
Sbjct: 92 PLYFPMELHRKEALTKDMEYFFGENWEEQVQCSEAAQKYVERIHYIGQNEPELLVAHAYT 151
Query: 202 IYFAHSAGGRMIGKKIAGELL----NNKGLEFYKWDG--DLSQLLQNVRDKLNKVAEQWT 255
Y +GG+++ KK+A L +G +FY ++ + Q Q R ++N A
Sbjct: 152 RYMGDLSGGQVL-KKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQFYRARMN--ALDLN 208
Query: 256 REEKNHCLEETEKSFKWSGEI 276
+ K +EE K+F+++ +I
Sbjct: 209 LKTKERIVEEANKAFEYNMQI 229
>HO2_RAT (P23711) Heme oxygenase 2 (EC 1.14.99.3) (HO-2)
Length = 315
Score = 55.5 bits (132), Expect = 1e-07
Identities = 54/211 (25%), Positives = 100/211 (46%), Gaps = 24/211 (11%)
Query: 86 HTK-----DQAKEGEKEVTEPEEKAVTKWEPTVDGYLK---FLVDSKVVYDTL----EKI 133
HTK + KEG KE + E + + G +K F + + +Y T E++
Sbjct: 26 HTKMADLSELLKEGTKEAHDRAENTQFV-KDFLKGNIKKELFKLATTALYFTYSALEEEM 84
Query: 134 VQDATHPSYAE-FRNTGLERSASLAKDLEWFKEQGYTIP-QPSSPGLNYAQYLRDLSQND 191
++ HP++A + T L R +L KD+E+F + + + S Y + + QN+
Sbjct: 85 DRNKDHPAFAPLYFPTELHRKEALIKDMEYFFGENWEEQVKCSEAAQKYVDRIHYVGQNE 144
Query: 192 PQAFICHFYNIYFAHSAGGRMIGKKIAGELL----NNKGLEFYKWD--GDLSQLLQNVRD 245
P+ + H Y Y +GG+++ KK+A L +G +FY ++ + Q Q R
Sbjct: 145 PELLVAHAYTRYMGDLSGGQVL-KKVAQRALKLPSTGEGTQFYLFEHVDNAQQFKQFYRA 203
Query: 246 KLNKVAEQWTREEKNHCLEETEKSFKWSGEI 276
++N A + + K +EE K+F+++ +I
Sbjct: 204 RMN--ALDLSMKTKERIVEEANKAFEYNMQI 232
>HO2_MOUSE (O70252) Heme oxygenase 2 (EC 1.14.99.3) (HO-2)
Length = 315
Score = 55.1 bits (131), Expect = 2e-07
Identities = 54/211 (25%), Positives = 100/211 (46%), Gaps = 24/211 (11%)
Query: 86 HTK-----DQAKEGEKEVTEPEEKAVTKWEPTVDGYLK---FLVDSKVVYDTL----EKI 133
HTK + KEG KE + E + + G +K F + + +Y T E++
Sbjct: 26 HTKMADLSELLKEGTKEAHDRAENTQFV-KDFLKGNIKKELFKLATTALYFTYSALEEEM 84
Query: 134 VQDATHPSYAE-FRNTGLERSASLAKDLEWFKEQGYTIP-QPSSPGLNYAQYLRDLSQND 191
++ HP++A + T L R A+L KD+++F + + + S Y + + QN+
Sbjct: 85 DRNKDHPAFAPLYFPTELHRKAALIKDMKYFFGENWEEQVKCSEAAQKYVDRIHYVGQNE 144
Query: 192 PQAFICHFYNIYFAHSAGGRMIGKKIAGELL----NNKGLEFYKWD--GDLSQLLQNVRD 245
P+ + H Y Y +GG+++ KK+A L +G +FY ++ + Q Q R
Sbjct: 145 PELLVAHAYTRYMGDLSGGQVL-KKVAQRALKLPSTGEGTQFYLFEHVDNAQQFKQFYRA 203
Query: 246 KLNKVAEQWTREEKNHCLEETEKSFKWSGEI 276
++N A + K +EE K+F+++ +I
Sbjct: 204 RMN--ALDLNLKTKERIVEEANKAFEYNMQI 232
>HO2_HUMAN (P30519) Heme oxygenase 2 (EC 1.14.99.3) (HO-2)
Length = 316
Score = 54.3 bits (129), Expect = 3e-07
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 92 KEGEKEVTEPEEKAVTKWEPTVDGYLK---FLVDSKVVYDTL----EKIVQDATHPSYAE 144
KEG KE + E + + G +K F + + +Y T E++ ++ HP++A
Sbjct: 38 KEGTKEAHDRAENTQFV-KDFLKGNIKKELFKLATTALYFTYSALEEEMERNKDHPAFAP 96
Query: 145 -FRNTGLERSASLAKDLEWFKEQGYTIP-QPSSPGLNYAQYLRDLSQNDPQAFICHFYNI 202
+ L R +L KD+E+F + + Q Y + + + QN+P+ + H Y
Sbjct: 97 LYFPMELHRKEALTKDMEYFFGENWEEQVQCPKAAQKYVERIHYIGQNEPELLVAHAYTR 156
Query: 203 YFAHSAGGRMIGKKIAGELL----NNKGLEFYKWDG--DLSQLLQNVRDKLNKVAEQWTR 256
Y +GG+++ KK+A L +G +FY ++ + Q Q R ++N A
Sbjct: 157 YMGDLSGGQVL-KKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMN--ALDLNM 213
Query: 257 EEKNHCLEETEKSFKWSGEI 276
+ K +EE K+F+++ +I
Sbjct: 214 KTKERIVEEANKAFEYNMQI 233
>HO_FUGRU (O73688) Heme oxygenase (EC 1.14.99.3) (HO)
Length = 277
Score = 52.8 bits (125), Expect = 1e-06
Identities = 45/175 (25%), Positives = 88/175 (49%), Gaps = 15/175 (8%)
Query: 112 TVDGYLKFLVDSKVVYDTLEKIV-QDATHPSYAE-FRNTGLERSASLAKDLEWFK----E 165
T+ Y L +Y LE+ + ++ HPS A + L R A++ KDLE+F
Sbjct: 47 TLQQYKLLLCSLYEIYLALEEEMDRNCDHPSVAPIYFPAELARLATIEKDLEFFFGPDWR 106
Query: 166 QGYTIPQPSSPGLNYAQYLRDLSQNDPQAFICHFYNIYFAHSAGGRMIGK--KIAGELLN 223
+ +P + Y +R + Q +P+ I H Y Y +GG+++G+ + + +L
Sbjct: 107 EKIVVPAATE---RYCHRIRQIGQENPEYLIAHAYTRYLGDLSGGQVLGRIAQKSMKLGG 163
Query: 224 NKGLEFYKWDGDLSQLL--QNVRDKLNKVAEQWTREEKNHCLEETEKSFKWSGEI 276
++GL F+ + G S L + R ++N V + T E+++ L+E +F+++ ++
Sbjct: 164 SEGLSFFAFPGVSSPNLFKRLYRSRMNSV--ELTEEQRSAVLQEALGAFEFNIQV 216
>HO1_PIG (P32394) Heme oxygenase 1 (EC 1.14.99.3) (HO-1)
Length = 288
Score = 52.4 bits (124), Expect = 1e-06
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 17/203 (8%)
Query: 82 AMKLHTKDQAKEGEKEVTEPEEKA-----VTKWEPTVDGYLKFLVDSKVVYDTLEKIVQ- 135
+M + KE KEV E A K E T +G+ + +YD LE+ ++
Sbjct: 8 SMPQDLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDALEEEIEH 67
Query: 136 DATHPSYAE-FRNTGLERSASLAKDLE-WFKEQGYTIPQPSSPGLNYAQYLRDLSQNDPQ 193
+ +P Y + L R A+L +D+ W+ + + Y + L+ + + +P+
Sbjct: 68 NKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQVGRFEPE 127
Query: 194 AFICHFYNIYFAHSAGGRMIGKKIAGELL----NNKGLEFYKWD--GDLSQLLQNVRDKL 247
+ H Y Y +GG+++ KKIA + L + +GL F+ + + ++ Q R ++
Sbjct: 128 LLVAHAYTRYMGDLSGGQVL-KKIAQKALDLPSSGEGLAFFTFPNVANATKFKQLYRSRM 186
Query: 248 NKVAEQWTREEKNHCLEETEKSF 270
N + + T E K LEE + +F
Sbjct: 187 NTL--EMTPEVKQRVLEEAKTAF 207
>HO1_HUMAN (P09601) Heme oxygenase 1 (EC 1.14.99.3) (HO-1)
Length = 288
Score = 50.4 bits (119), Expect = 5e-06
Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 17/203 (8%)
Query: 82 AMKLHTKDQAKEGEKEVTEPEEKA-----VTKWEPTVDGYLKFLVDSKVVYDTLEK-IVQ 135
+M + KE KEV E A K + T DG+ + +Y LE+ I +
Sbjct: 8 SMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIER 67
Query: 136 DATHPSYAE-FRNTGLERSASLAKDLEWFKEQGYTIPQPSSPGLN-YAQYLRDLSQNDPQ 193
+ P +A + L R A+L +DL ++ + P +P + Y + L ++ + +P+
Sbjct: 68 NKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPE 127
Query: 194 AFICHFYNIYFAHSAGGRMIGKKIAGELL----NNKGLEFYKWD--GDLSQLLQNVRDKL 247
+ H Y Y +GG+++ KKIA + L + +GL F+ + ++ Q R ++
Sbjct: 128 LLVAHAYTRYLGDLSGGQVL-KKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRM 186
Query: 248 NKVAEQWTREEKNHCLEETEKSF 270
N + + T + +EE + +F
Sbjct: 187 NSL--EMTPAVRQRVIEEAKTAF 207
>HO_GUITH (O78497) Heme oxygenase (EC 1.14.99.3)
Length = 237
Score = 48.1 bits (113), Expect = 2e-05
Identities = 39/129 (30%), Positives = 62/129 (47%), Gaps = 14/129 (10%)
Query: 114 DGYLKFLVDSKVVYDTLEKIVQ-----DATHPSYAEFRNTGLERSASLAKDLEWFKEQGY 168
+ Y K + + VY +E+ ++ D P Y L RS SLA DL ++ +
Sbjct: 37 NSYKKMMSNLYFVYKAMEEEMEYHKENDLIKPIYF----VELNRSESLALDLNFYYGDTW 92
Query: 169 T-IPQPSSPGLNYAQYLRDLSQNDPQAFICHFYNIYFAHSAGGRMIGKKIAGELL---NN 224
I +PS Y ++ +S+ P I H Y Y +GG+++ KKIA L N+
Sbjct: 93 KDIIEPSEATRVYINRIKKISKEKPLLLIAHAYTRYLGDLSGGQIL-KKIAQRALNVPNS 151
Query: 225 KGLEFYKWD 233
+GL FY++D
Sbjct: 152 QGLAFYEFD 160
>HO1_MOUSE (P14901) Heme oxygenase 1 (EC 1.14.99.3) (HO-1) (P32
protein)
Length = 289
Score = 46.6 bits (109), Expect = 7e-05
Identities = 48/203 (23%), Positives = 94/203 (45%), Gaps = 17/203 (8%)
Query: 82 AMKLHTKDQAKEGEKEVTEPEEKA-----VTKWEPTVDGYLKFLVDSKVVYDTLEK-IVQ 135
+M + KE KEV E A K + + +G+ + +Y LE+ I +
Sbjct: 8 SMPQDLSEALKEATKEVHIQAENAEFMKNFQKGQVSREGFKLVMASLYHIYTALEEEIER 67
Query: 136 DATHPSYAE-FRNTGLERSASLAKDLEWFKEQGYTIPQPSSPGL-NYAQYLRDLSQNDPQ 193
+ +P YA + L R A+L +D+ ++ + P +P +Y + L ++ + P+
Sbjct: 68 NKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEIIPCTPATQHYVKRLHEVGRTHPE 127
Query: 194 AFICHFYNIYFAHSAGGRMIGKKIAGELL----NNKGLEFYKWDG--DLSQLLQNVRDKL 247
+ H Y Y +GG+++ KKIA + + + +GL F+ + ++ Q R ++
Sbjct: 128 LLVAHAYTRYLGDLSGGQVL-KKIAQKAMALPSSGEGLAFFTFPNIDSPTKFKQLYRARM 186
Query: 248 NKVAEQWTREEKNHCLEETEKSF 270
N + + T E K+ EE + +F
Sbjct: 187 NTL--EMTPEVKHRVTEEAKTAF 207
>HO1_SYNY3 (P72849) Heme oxygenase 1 (EC 1.14.99.3)
Length = 240
Score = 45.8 bits (107), Expect = 1e-04
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 83 MKLHTKDQAKEGEKEVTEPEE-----KAVTKWEPTVDGYLKFLVDSKVVYDTLEK-IVQD 136
M ++ Q +EG K+ E K K + Y K + + VY +E+ + +
Sbjct: 1 MSVNLASQLREGTKKSHSMAENVGFVKCFLKGVVEKNSYRKLVGNLYFVYSAMEEEMAKF 60
Query: 137 ATHPSYAEFRNTGLERSASLAKDLEWFKEQGYTIP-QPSSPGLNYAQYLRDLSQNDPQAF 195
HP + L R SL +DL+++ + + S+ G Y +R ++ P+
Sbjct: 61 KDHPILSHIYFPELNRKQSLEQDLQFYYGSNWRQEVKISAAGQAYVDRVRQVAATAPELL 120
Query: 196 ICHFYNIYFAHSAGGRMIGKKIAGELLN--NKGLEFYKW 232
+ H Y Y +GG+++ KKIA +N + G FY++
Sbjct: 121 VAHSYTRYLGDLSGGQIL-KKIAQNAMNLHDGGTAFYEF 158
>HO1_RAT (P06762) Heme oxygenase 1 (EC 1.14.99.3) (HO-1) (HSP32)
Length = 289
Score = 45.8 bits (107), Expect = 1e-04
Identities = 48/210 (22%), Positives = 97/210 (45%), Gaps = 17/210 (8%)
Query: 75 VEEMRFVAMKLHTKDQAKEGEKEVTEPEEKA-----VTKWEPTVDGYLKFLVDSKVVYDT 129
+E + +M + KE KEV E + K + + +G+ + +Y
Sbjct: 1 MERPQLDSMSQDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTA 60
Query: 130 LEK-IVQDATHPSYAE-FRNTGLERSASLAKDLEWFKEQGYTIPQPSSPGL-NYAQYLRD 186
LE+ I ++ +P YA + L R A+L +D+ ++ + P +P +Y + L +
Sbjct: 61 LEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHE 120
Query: 187 LSQNDPQAFICHFYNIYFAHSAGGRMIGKKIAGELL----NNKGLEFYKWDG--DLSQLL 240
+ P+ + H Y Y +GG+++ KKIA + + + +GL F+ + + ++
Sbjct: 121 VGGTHPELLVAHAYTRYLGDLSGGQVL-KKIAQKAMALPSSGEGLAFFTFPSIDNPTKFK 179
Query: 241 QNVRDKLNKVAEQWTREEKNHCLEETEKSF 270
Q R ++N + + T E K+ EE + +F
Sbjct: 180 QLYRARMNTL--EMTPEVKHRVTEEAKTAF 207
>HO2_SYNY3 (P74133) Heme oxygenase 2 (EC 1.14.99.3)
Length = 250
Score = 45.1 bits (105), Expect = 2e-04
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 150 LERSASLAKDLEWFKEQGYT-IPQPSSPGLNYAQYLRDLSQNDPQAFICHFYNIYFAHSA 208
L R+ LA+DL ++ + I QP+ Y L+ ++ ++P+ I H Y Y +
Sbjct: 73 LNRTDKLAEDLTYYYGPNWQQIIQPTPCAKIYVDRLKTIAASEPELLIAHCYTRYLGDLS 132
Query: 209 GGRMIGKKI--AGELLNNKGLEFYKWD-----GDLSQLLQNVRDKLNKVAEQWTREEKNH 261
GG+ + I A +L +G Y++D GD Q + RD LN + N
Sbjct: 133 GGQSLKNIIRSALQLPEGEGTAMYEFDSLPTPGDRRQFKEIYRDVLNSL--PLDEATINR 190
Query: 262 CLEETEKSFKWSGEIL 277
+EE +F + E++
Sbjct: 191 IVEEANYAFSLNREVM 206
>HMUO_CORDI (P71119) Heme oxygenase (EC 1.14.99.3)
Length = 215
Score = 40.8 bits (94), Expect = 0.004
Identities = 37/157 (23%), Positives = 74/157 (46%), Gaps = 9/157 (5%)
Query: 127 YDTLEKIVQDATHPSYAE-FRNTGLERSASLAKDLEWFKEQG-YTIPQPSSPG-LNYAQY 183
Y LE+ +AE + L R+ LA+DL+ + + +SP ++Y
Sbjct: 53 YTALEQAADAVRASGFAESLLDPALNRAEVLARDLDKLNDGSEWRSRITASPAVIDYVNR 112
Query: 184 LRDLSQN-DPQAFICHFYNIYFAHSAGGRMIGKKIAGEL-LNNKGLEFYKWDG--DLSQL 239
L ++ N D A + H Y Y +GG++I + + ++ + L FY ++G L
Sbjct: 113 LEEIRDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVY 172
Query: 240 LQNVRDKLNKVAEQWTREEKNHCLEETEKSFKWSGEI 276
R+KLN + + + E++ + L+E +F ++ ++
Sbjct: 173 KDEYREKLNNL--ELSDEQRENLLKEATDAFVFNHQV 207
>HO3_RAT (O70453) Heme oxygenase 3 (EC 1.14.99.3) (HO-3)
Length = 290
Score = 40.4 bits (93), Expect = 0.005
Identities = 51/224 (22%), Positives = 86/224 (37%), Gaps = 22/224 (9%)
Query: 57 ATAAETARKRYPGESKGFVEEMRFVAMKLHTKDQAKEGEKEVTEPEEKAVTKWEPTVDGY 116
++ ETA E E + D KEG KE + E V +
Sbjct: 2 SSEVETAEAVDESEKNSMASEKENHSKIADFSDLLKEGTKEADDRAENT-----QFVKDF 56
Query: 117 LKFLVDSKVVYDTLEKIVQDATHPSYAEFRNTGLERSASLAKDLEWFKEQGYTIP-QPSS 175
LK + + L K+ A S E E SL KD+E+F + + + S
Sbjct: 57 LKGNIKKE-----LFKLATTALSYSAPE------EEMDSLTKDMEYFFGENWEEKVKCSE 105
Query: 176 PGLNYAQYLRDLSQNDPQAFICHFYNIYFAHSAGGRMIGKKIAGEL-LNNKGLEFYKWD- 233
Y + + QN+P+ + H Y+ Y + G + KK + +G +FY ++
Sbjct: 106 AAQTYVDQIHYVGQNEPEHLVAHTYSTYMGGNLSGDQVLKKETQPVPFTREGTQFYLFEH 165
Query: 234 -GDLSQLLQNVRDKLNKVAEQWTREEKNHCLEETEKSFKWSGEI 276
+ Q +LN A + K +EE K+F+++ +I
Sbjct: 166 VDNAKQFKLFYCARLN--ALDLNLKTKERIVEEATKAFEYNMQI 207
>HO_RHOVL (O19998) Heme oxygenase (EC 1.14.99.3)
Length = 235
Score = 40.0 bits (92), Expect = 0.006
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 150 LERSASLAKDLEWF---KEQGYTIPQPSSPGLNYAQYLRDLSQNDPQAFICHFYNIYFAH 206
L R +SL +DL+++ + Q P P++ Y + ++S P+ I H Y Y
Sbjct: 76 LNRKSSLEEDLQFYYGLEWQDKIFPSPATKV--YINRIHEISNTSPELLIAHCYTRYLGD 133
Query: 207 SAGGRMIGKKIAGELLN---NKGLEFYKWDG--DLSQLLQNVRDKLNKV 250
+GG+++ KKI +N +G FY++ D QN R L+ +
Sbjct: 134 LSGGQIL-KKITQSAMNLSGGEGTAFYEFKDIKDEKNFKQNYRLALDSI 181
>HMGL_TRYBR (P26586) High mobility group protein homolog TDP-1
Length = 271
Score = 34.7 bits (78), Expect = 0.27
Identities = 22/86 (25%), Positives = 37/86 (42%), Gaps = 13/86 (15%)
Query: 95 EKEVTEPEEKAVTKWEPTVDGYLKFLVDSK-------------VVYDTLEKIVQDATHPS 141
+KE+TE +K +P V YL F+ D + + TL K+ DA+
Sbjct: 104 KKEMTEKPKKPADYPKPAVSSYLLFVADQREELKAKNPGMQNTAILQTLGKMWSDASDDV 163
Query: 142 YAEFRNTGLERSASLAKDLEWFKEQG 167
+R E A ++++ +K QG
Sbjct: 164 KEHYRKKAEEDKARFRREVDEYKRQG 189
>SYE_STRA3 (Q8E7P2) Glutamyl-tRNA synthetase (EC 6.1.1.17)
(Glutamate--tRNA ligase) (GluRS)
Length = 484
Score = 33.1 bits (74), Expect = 0.78
Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 32/190 (16%)
Query: 8 SQIQSLYIIKPRLSPPPPPHRQFRSIYFPTTRLLQQHRF--------RQMKSVVIVSATA 59
SQ+++L + P H +R + RL R+ + KS V A
Sbjct: 58 SQLENLRWLGMDWDESPETHENYRQ----SERLELYQRYIDQLLAEGKAYKSYVTEEELA 113
Query: 60 AETARKRYPGESKGFVEEMRFVAMKLHTKDQAKEGEKEVT--------EPEEKAVTKWEP 111
AE R+ GE+ ++ E F+ M T+ +A E+E + E + KW
Sbjct: 114 AERERQELAGETPRYINE--FIGMS-ETEKEAYIAEREASGIIPTVRLAVNESGIYKWTD 170
Query: 112 TVDGYLKF---------LVDSKVVYDTLEKIVQDATHPSYAEFRNTGLERSASLAKDLEW 162
V G ++F ++ K Y T V H G + A+ K L
Sbjct: 171 MVKGDIEFEGSNIGGDWVIQKKDGYPTYNFAVVIDDHDMQISHVIRGDDHIANTPKQLMV 230
Query: 163 FKEQGYTIPQ 172
++ G+ PQ
Sbjct: 231 YEALGWEAPQ 240
>FLHF_AQUAE (O67266) Flagellar biosynthesis protein flhF (Flagella
associated GTP-binding protein)
Length = 373
Score = 33.1 bits (74), Expect = 0.78
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 37 TTRLLQQHRF------RQMKSVVIVSATAAETARKRYPGESKGF--VEEMRFVAMKLHTK 88
++R+++++RF R+ V V E RK + E + +E ++ + +L
Sbjct: 30 SSRVIRKNRFGFLPIFRKKILEVTVGIREEEDFRKEFERERELIKEIENLKKIVNELINN 89
Query: 89 DQAKEGEKEVTEPEEKAVTKWEPTVDGYLKFLVDSKVVYDTLEKIVQDA 137
+ K GEK V EK + P V YL+ LV + + EKI+QDA
Sbjct: 90 GEVK-GEKIV----EKGSDTYAPRVKRYLEKLVIKNISKNIAEKIIQDA 133
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,490,986
Number of Sequences: 164201
Number of extensions: 1458309
Number of successful extensions: 5394
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5383
Number of HSP's gapped (non-prelim): 32
length of query: 282
length of database: 59,974,054
effective HSP length: 109
effective length of query: 173
effective length of database: 42,076,145
effective search space: 7279173085
effective search space used: 7279173085
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0252a.3