BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0248.1
(119 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310... 38 0.005
LDH1_CLOAB (Q97MD1) L-lactate dehydrogenase 1 (EC 1.1.1.27) (L-L... 36 0.018
PDX3_HUMAN (P30048) Thioredoxin-dependent peroxide reductase, mi... 28 2.8
PDX3_BOVIN (P35705) Thioredoxin-dependent peroxide reductase, mi... 28 2.8
GUNC_PSEFL (P27033) Endoglucanase C precursor (EC 3.2.1.4) (Endo... 28 3.7
STB3_MOUSE (Q60770) Syntaxin binding protein 3 (UNC-18 homolog 3... 27 8.2
PSTB_AQUAE (O67154) Phosphate import ATP-binding protein pstB (E... 27 8.2
NS3B_MOUSE (Q9CQE1) NipSnap3B protein 27 8.2
>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
(ORF154)
Length = 154
Score = 37.7 bits (86), Expect = 0.005
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 39 SWYLVPWCEVSCPKEN-GGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNK 97
SW V W ++ KE+ GGLG R N A+L K ++ L R+L +Y +
Sbjct: 40 SW--VAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHS 97
Query: 98 SVLAGKYKRGDSYIWKGIVSAK 119
S++ SY W+ I+ +
Sbjct: 98 SMMECSVGTRPSYAWRSIIHGR 119
>LDH1_CLOAB (Q97MD1) L-lactate dehydrogenase 1 (EC 1.1.1.27) (L-LDH
1)
Length = 313
Score = 35.8 bits (81), Expect = 0.018
Identities = 35/139 (25%), Positives = 60/139 (42%), Gaps = 37/139 (26%)
Query: 1 IGSLPLLEKNEFTFKLHLHLEYD-KNIRSCIWAKGGQTH--SWYLV--------PWCEVS 49
IGS +L+ + F + L H E D +NI + I + G + +W L +CE S
Sbjct: 142 IGSGTVLDTSRFRYMLSEHFEIDVRNIHTYIMGEHGDSEIATWSLTNIAGMDVNEYCEAS 201
Query: 50 CPKENGGLGLR-----------------STSLNNIAMLEKLVESLLRDKGKLWGRVLSQK 92
C K +G L + +T ++++VE++LRD+ +
Sbjct: 202 CKKCDGSLKYKIYDDVKNAAYHVIEKKGATYYAVALAVKRIVEAILRDENSI-------- 253
Query: 93 YLSNKSVLAGKYKRGDSYI 111
L+ S+L G+Y D Y+
Sbjct: 254 -LTVSSLLEGQYGIKDVYM 271
>PDX3_HUMAN (P30048) Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (EC 1.11.1.-) (Peroxiredoxin 3)
(Antioxidant protein 1) (AOP-1) (MER5 protein homolog)
(HBC189) (PRX III)
Length = 256
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 5/37 (13%)
Query: 48 VSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKL 84
++ P++NGGLG NIA+L L + + RD G L
Sbjct: 144 INTPRKNGGLGHM-----NIALLSDLTKQISRDYGVL 175
>PDX3_BOVIN (P35705) Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (EC 1.11.1.-) (Peroxiredoxin 3)
(Antioxidant protein 1) (AOP-1) (SP-22 protein)
Length = 257
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 5/37 (13%)
Query: 48 VSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKL 84
++ P++NGGLG NIA+L L + + RD G L
Sbjct: 145 INTPRKNGGLGHM-----NIALLSDLTKQISRDYGVL 176
>GUNC_PSEFL (P27033) Endoglucanase C precursor (EC 3.2.1.4)
(Endo-1,4-beta-glucanase) (Cellulase) (EGC)
(Cellodextrinase C)
Length = 748
Score = 28.1 bits (61), Expect = 3.7
Identities = 11/29 (37%), Positives = 15/29 (50%), Gaps = 3/29 (10%)
Query: 24 KNIRSCIWA---KGGQTHSWYLVPWCEVS 49
K I +C W+ + T WYL PW V+
Sbjct: 695 KGINACYWSMNPESADTMGWYLTPWDPVT 723
>STB3_MOUSE (Q60770) Syntaxin binding protein 3 (UNC-18 homolog 3)
(UNC-18C) (MUNC-18-3)
Length = 592
Score = 26.9 bits (58), Expect = 8.2
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 6/45 (13%)
Query: 53 ENGGLGLRSTSLNNIAMLEKLVESLLRD------KGKLWGRVLSQ 91
EN G+ +S L+N + L +LVE L D KG + G+ SQ
Sbjct: 190 ENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQ 234
>PSTB_AQUAE (O67154) Phosphate import ATP-binding protein pstB (EC
3.6.3.27) (Phosphate-transporting ATPase) (ABC phosphate
transporter)
Length = 257
Score = 26.9 bits (58), Expect = 8.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 53 ENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKR 106
EN GL+ + ++L++ VE LRD LW V + + + S+ G+ +R
Sbjct: 109 ENVAYGLKLRGIKKKSILDEKVEKALRD-AALWDEVKDRLHENAYSLSGGQQQR 161
>NS3B_MOUSE (Q9CQE1) NipSnap3B protein
Length = 247
Score = 26.9 bits (58), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 41 YLVPWCEVSCPKENG 55
YLVPWC++ P + G
Sbjct: 130 YLVPWCKIGTPPKEG 144
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,729,398
Number of Sequences: 164201
Number of extensions: 560843
Number of successful extensions: 979
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 59,974,054
effective HSP length: 95
effective length of query: 24
effective length of database: 44,374,959
effective search space: 1064999016
effective search space used: 1064999016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0248.1