BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0247.1
(323 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RFCL_METMP (Q6M0E9) Replication factor C large subunit (RFC larg... 36 0.15
YODN_BACSU (O34414) Hypothetical protein yodN 33 0.96
MAPA_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Co... 32 2.8
RFCL_METJA (Q58294) Replication factor C large subunit (RFC larg... 31 3.7
DD50_MOUSE (Q99MJ9) DEAD-box protein 50 (EC 3.6.1.-) (Nucleolar ... 31 4.8
RFBJ_SALMU (Q00329) CDP-abequose synthase (EC 4.2.1.-) 30 6.2
Y291_METJA (Q57739) Probable signal recognition particle protein... 30 8.1
>RFCL_METMP (Q6M0E9) Replication factor C large subunit (RFC large
subunit) (Clamp loader large subunit)
Length = 486
Score = 35.8 bits (81), Expect = 0.15
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 71 VDEDGVKIPREKMNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTH 130
+DE +K+ GD + D T +I E+ +++ DR+S KSIFD++R+
Sbjct: 179 IDEKIIKMIASHSGGDLRAAINDLQSLATG--GSIEIEDAKELPDRDSEKSIFDAMRIIM 236
Query: 131 EGNEEDKETKALALIKK-YGAFKMEPDESIEAMFSRF*MLIAGIRVLDK 178
+ D T A +K+ G + E++ + ++ L G L K
Sbjct: 237 KTTHYDIATSATRDVKEDIGTIEEWISENLPKEYLKYKDLAEGYDYLSK 285
>YODN_BACSU (O34414) Hypothetical protein yodN
Length = 226
Score = 33.1 bits (74), Expect = 0.96
Identities = 21/86 (24%), Positives = 39/86 (44%), Gaps = 6/86 (6%)
Query: 54 RFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQKKKYKDHHRARTILLNAISYEEYEKI 113
R+ D W+ ++Y TRL D + ++ E + +K D ++ + + Y
Sbjct: 100 RYLEDGWEDIIYELTRLKDGEWLETEEEDLTLVLRKYEMDQ------FVHQLLFVHYVGE 153
Query: 114 TDRESAKSIFDSLRMTHEGNEEDKET 139
T E + I S + EG +ED++T
Sbjct: 154 TGHEIGEDIASSALLQFEGGDEDQDT 179
>MAPA_RAT (P34926) Microtubule-associated protein 1A (MAP 1A)
[Contains: MAP1 light chain LC2]
Length = 2774
Score = 31.6 bits (70), Expect = 2.8
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 66 GYTRLVDEDGVKIPREKMNGDQKKKYKDHHRARTILLNAISYEEYE-KITDRESAKSIFD 124
G T + G ++ +EK +++K+ A N + EE E ++ + K+ +
Sbjct: 603 GSTNRGPDSGAEVEKEKETWEERKQ----REAELGPENTAAREESEAEVKEDVIEKAELE 658
Query: 125 SLRMTHEGNEEDKETKALALIKKY--GAFKMEPDESIEAMFSR 165
+ TH +EE +ETKA + +K+ A K P +S EA+ R
Sbjct: 659 EMEETHPSDEEGEETKAESFYQKHTQEALKASP-KSREALGGR 700
>RFCL_METJA (Q58294) Replication factor C large subunit (RFC large
subunit) (Clamp loader large subunit)
Length = 516
Score = 31.2 bits (69), Expect = 3.7
Identities = 21/66 (31%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Query: 71 VDEDGVKIPREKMNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRM-- 128
VD+ +K+ + GD + D L +SYE +K+ DR+ +IFD+LR+
Sbjct: 179 VDDKTLKMIAQHSAGDLRSAINDLEALA--LSGDLSYEAAQKLPDRKREANIFDALRVIL 236
Query: 129 --THEG 132
TH G
Sbjct: 237 KTTHYG 242
>DD50_MOUSE (Q99MJ9) DEAD-box protein 50 (EC 3.6.1.-) (Nucleolar
protein Gu2) (Gu-beta)
Length = 734
Score = 30.8 bits (68), Expect = 4.8
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 80 REKMNGDQKK------KYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGN 133
REK+NGD K+ ++ H++R L +EYEK + R S S +H+ +
Sbjct: 67 REKLNGDTKEGLRFSDEFSPSHKSRRKDLPNGDVDEYEKRSKRVS------SSENSHKSS 120
Query: 134 EEDKETKALALIKKYGAF 151
++ +ET L +K GAF
Sbjct: 121 DKAEET--LTREQKEGAF 136
>RFBJ_SALMU (Q00329) CDP-abequose synthase (EC 4.2.1.-)
Length = 293
Score = 30.4 bits (67), Expect = 6.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 90 KYKDHHR-ARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
KY+ H+ R+ + + + E KI E F +LR+ H E DK K + + K
Sbjct: 119 KYEKHYGYMRSYMASKRHFVELSKIYVEEHPDVCFINLRLEHVYGERDKAGKIIPYVIK- 177
Query: 149 GAFKMEPDESIEAMFSR 165
KM+ +E I+ +R
Sbjct: 178 ---KMKNNEDIDCTIAR 191
>Y291_METJA (Q57739) Probable signal recognition particle protein
MJ0291
Length = 409
Score = 30.0 bits (66), Expect = 8.1
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 88 KKKYKDHHRARTILLNAISYEEYEKITDRESAKS--IFDSLRMTHEGNEEDKETKALALI 145
K K K A I S E E++ + + KS F SL EE K+ KA I
Sbjct: 4 KLKEKLLETASKITEKIYSKGEAEEVKEEKEEKSKISFTSLFKKEPKKEEVKKEKAEEEI 63
Query: 146 KKYGAFKMEPDESIE 160
KK K EP E +E
Sbjct: 64 KKSEIVKTEPSEKVE 78
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.343 0.150 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,373,039
Number of Sequences: 164201
Number of extensions: 1294026
Number of successful extensions: 6159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6157
Number of HSP's gapped (non-prelim): 7
length of query: 323
length of database: 59,974,054
effective HSP length: 110
effective length of query: 213
effective length of database: 41,911,944
effective search space: 8927244072
effective search space used: 8927244072
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0247.1