BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0240.16
(1549 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 520 e-146
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 484 e-136
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 169 4e-41
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 151 1e-35
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 124 2e-27
YMU0_YEAST (Q04670) Transposon Ty1 protein B 114 2e-24
YMT5_YEAST (Q04214) Transposon Ty1 protein B 114 2e-24
YME4_YEAST (Q04711) Transposon Ty1 protein B 114 2e-24
YJZ9_YEAST (P47100) Transposon Ty1 protein B 114 2e-24
YMD9_YEAST (Q03434) Transposon Ty1 protein B 114 3e-24
YJZ7_YEAST (P47098) Transposon Ty1 protein B 114 3e-24
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 108 9e-23
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 102 6e-21
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 68 2e-10
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 59 1e-07
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 55 1e-06
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 55 2e-06
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 54 3e-06
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 53 6e-06
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 520 bits (1339), Expect = e-146
Identities = 330/1025 (32%), Positives = 536/1025 (52%), Gaps = 52/1025 (5%)
Query: 558 WYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSI----GDGKTPVIND 613
W +D+ S H T R +F + G V G KI G G I G T V+ D
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVA-GDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKD 352
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGS-VLFSGKRKNDIYKIRSSEL 672
V V L NL+S + GY+ F + T GS V+ G + +Y+ +
Sbjct: 353 VRHVPDLRMNLISGIALDRDGYESYFANQKWRL---TKGSLVIAKGVARGTLYRTNAEIC 409
Query: 673 LSQKVKCLMSVNDEQWI--WHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQK 730
+ L + DE + WH+R+GH S + + L+K +L+ + K ++ C+ C
Sbjct: 410 QGE----LNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCLF 462
Query: 731 GKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRH 790
GK + F+ + L+L++ D+ GP++ ES+GG KY + +DD SR WV L+
Sbjct: 463 GKQHRVSFQTSSE-RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKT 521
Query: 791 KDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQ 850
KD+ +F F V++E + +RSD+GGE+ ++ FE+ +S GI H + P TPQ
Sbjct: 522 KDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQH 581
Query: 851 NGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGR 910
NGV ER N T+ E R+M++ + + K FW EA+ TACY+ NR P+ + P + +
Sbjct: 582 NGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNK 641
Query: 911 QPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQ 970
+ S+ FG F KEQ K D K++ C F+GY + G+R+++ + + V S
Sbjct: 642 EVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRD 701
Query: 971 IRF--------DDKLGSEKSKLFERFADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTS 1022
+ F D K+ + F + + + ++V+ + E +
Sbjct: 702 VVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQG 761
Query: 1023 DPLQKKKRIVASHP-----EELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVD 1077
+ L + V HP + + + P R S PS E +L EP+S+
Sbjct: 762 EQLDEGVEEV-EHPTQGEEQHQPLRRSERP-RVESRRYPSTEYVL----ISDDREPESLK 815
Query: 1078 EAL---EDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNK 1134
E L E ++AMQEE++ KN + L+ PKG + KWVF+ K + ++ R K
Sbjct: 816 EVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYK 875
Query: 1135 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEE 1194
ARLV +G+ Q++GID+ E F+PV ++ +IR ++S + + ++ + Q+DVK+AFL+G + EE
Sbjct: 876 ARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEE 935
Query: 1195 VYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCR 1254
+Y++QP GFE V KL KSLYGLKQAPR WY + SF+ +++ D ++ +
Sbjct: 936 IYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFK 995
Query: 1255 TY-KNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQI--DQRP 1311
+ +N+ +I+ +YVDD++ + L + + F+M +G + LG++I ++
Sbjct: 996 RFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTS 1055
Query: 1312 GVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKE------EVSSKVCQKLYRGMI 1365
++ Q+KY +L++FNM + TP+ L K+ E + + Y +
Sbjct: 1056 RKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAV 1115
Query: 1366 GSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYT 1424
GSL+Y + +RPDI +V + +RF +P + H AVK IL+YL+GTT L + S+
Sbjct: 1116 GSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGSDPI 1174
Query: 1425 LSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQT 1484
L G+ DAD AGD RKS++G ++W SK Q +ALST EAEY++A +
Sbjct: 1175 LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEM 1234
Query: 1485 IWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSL 1544
IW+K L++ GL K+ +YCD+ +AI LSKN + H+R KHI+V+YH+IR+ V +L +
Sbjct: 1235 IWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKV 1294
Query: 1545 EYVDT 1549
+ T
Sbjct: 1295 LKIST 1299
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 484 bits (1247), Expect = e-136
Identities = 321/1108 (28%), Positives = 559/1108 (49%), Gaps = 142/1108 (12%)
Query: 560 LDSGCSRHMTGTRSIF----QKLTPLKSGGDVGFGGNQKGKII-----GKGSIGDGKTPV 610
LDSG S H+ S++ + + PLK ++G+ I G + +
Sbjct: 291 LDSGASDHLINDESLYTDSVEVVPPLK------IAVAKQGEFIYATKRGIVRLRNDHEIT 344
Query: 611 INDVLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSS 670
+ DVL + NL+S+ ++ + G + F+++G KN + +++S
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTI-------------SKNGLMVVKNS 391
Query: 671 ELLS-------QKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRG---LPHLKYS 720
+L+ Q + +WH R GH S K+ ++ + N+ L +L+ S
Sbjct: 392 GMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELS 451
Query: 721 SEALCEACQKGKFTKKPFKA-KNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDY 779
E +CE C GK + PFK K+ RPL ++H D+ GP+ ++ K Y ++ VD +
Sbjct: 452 CE-ICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQF 510
Query: 780 SRWTWVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGIS 839
+ + +++K + +MF +F+ + + F V+ + D+G E+ + +GIS
Sbjct: 511 THYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGIS 570
Query: 840 HNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPIL 899
++ + P TPQ NGV ER T+ E ARTM+ + + K FW EA+ TA Y+ NRI R ++
Sbjct: 571 YHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALV 630
Query: 900 E--KTPYELCKGRQPDISYFHPFGSTCFM------------------------------- 926
+ KTPYE+ ++P + + FG+T ++
Sbjct: 631 DSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDA 690
Query: 927 LNTK---------EQLGKFDSKALK--CYFLGYSERSKGFRIYNIIHQTVE--------- 966
+N K ++ +S+A+K FL S+ S+ N + ++
Sbjct: 691 VNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKE 750
Query: 967 -ESIQIRFDDKLGSEKS------KLFE-RFADLSIDCS---------EANQPIKSPEDVA 1009
++IQ D K K+ K+ + F + S +C E+N+ +
Sbjct: 751 CDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKR 810
Query: 1010 PEAEASEDFPTTSDPLQKKKRIVASHPEEL------------IIGNKDAPVRTRSMLKPS 1057
+ + + +P + ++ A H +E+ II + ++T+ + +
Sbjct: 811 KRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYN 870
Query: 1058 EE------TLLSLKGFVSLIEPKSVDEAL--EDKG-WIQAMQEELDQFTKNDVWTLMPKP 1108
EE +L+ + + P S DE +DK W +A+ EL+ N+ WT+ +P
Sbjct: 871 EEDNSLNKVVLNAHTIFNDV-PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRP 929
Query: 1109 KGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLIS 1168
+ +++ ++WVF K NE G R KARLVA+G++Q+ IDY ETFAPVAR+ + R ++S
Sbjct: 930 ENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILS 989
Query: 1169 FSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRA 1228
+ +N+ +HQMDVK+AFLNG + EE+Y++ P G N ++V KL K++YGLKQA R
Sbjct: 990 LVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS--DNVCKLNKAIYGLKQAARC 1047
Query: 1229 WYERLSSFLLQNEFVRGKGDNTLFC--RTYKNDILIVQIYVDDIIFGSANPSLCKEFSKL 1286
W+E L + EFV D ++ + N+ + V +YVDD++ + + + F +
Sbjct: 1048 WFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRY 1107
Query: 1287 MQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCI 1346
+ +F M+ + E+K+F+GI+I+ + Y+ Q Y ++L KFNM +CN TP+ P+ I
Sbjct: 1108 LMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL-PSKI 1166
Query: 1347 LEKEEVSSKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILK 1405
+ S + C R +IG L+Y + +RPD+ +V++ +R+ S +KR+L+
Sbjct: 1167 NYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLR 1226
Query: 1406 YLKGTTNLGLMYRK--TSEYTLSGFCDADFAGDRVERKSTSGSC-HFLGSNLVTWSSKRQ 1462
YLKGT ++ L+++K E + G+ D+D+AG ++RKST+G NL+ W++KRQ
Sbjct: 1227 YLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQ 1286
Query: 1463 NTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKK-VPIYCDNTAAISLSKNPILHS 1521
N++A S+ EAEY++ + +W+K L + L+ + IY DN IS++ NP H
Sbjct: 1287 NSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHK 1346
Query: 1522 RAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
RAKHI++KYH+ R+ VQ + LEY+ T
Sbjct: 1347 RAKHIDIKYHFAREQVQNNVICLEYIPT 1374
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 169 bits (429), Expect = 4e-41
Identities = 101/305 (33%), Positives = 169/305 (55%), Gaps = 9/305 (2%)
Query: 1180 MDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQ 1239
MDV +AFLN + E +YVKQPPGF + ++P++V++L +YGLKQAP W E +++ L +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1240 NEFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGEL 1299
F R +G++ L+ R+ + + + +YVDD++ + +P + + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1300 KYFLGIQIDQRP-GVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEK-EEVSSKVC 1357
FLG+ I Q G + + Y + K + S+ N K P C + E +S
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDY---IAKAASESEINTFKLTQTPLCNSKPLFETTSPHL 177
Query: 1358 QKL--YRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLG 1414
+ + Y+ ++G LL+ RPDI + V L +RF +PR HL + +R+L+YL T ++
Sbjct: 178 KDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMC 237
Query: 1415 LMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKR-QNTIALSTAEAE 1473
L YR S+ L+ +CDA ST G L VTWSSK+ + I + + EAE
Sbjct: 238 LKYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAE 297
Query: 1474 YVSAA 1478
Y++A+
Sbjct: 298 YITAS 302
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 151 bits (382), Expect = 1e-35
Identities = 77/222 (34%), Positives = 123/222 (54%), Gaps = 1/222 (0%)
Query: 1265 IYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLE 1324
+YVDDI+ ++ +L + + F M +G + YFLGIQI P ++ Q KY +
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 1325 LLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHL 1384
+L M DC TP+ P + + +R ++G+L YLT +RPDI ++V++
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 1385 CARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTS 1444
+ +P +KR+L+Y+KGT GL K S+ + FCD+D+AG R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 1445 GSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIW 1486
G C FLG N+++WS+KRQ T++ S+ E EY + A + W
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 124 bits (312), Expect = 2e-27
Identities = 99/374 (26%), Positives = 175/374 (46%), Gaps = 24/374 (6%)
Query: 622 HNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELLSQKVKCLM 681
++LLS+S++A++ F + + ++DG+VL + D Y + L+ + L
Sbjct: 520 YDLLSLSELANQNITACFTRN---TLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLT 576
Query: 682 --------SVNDEQW-IWHRRLGHASLRKISQLSKLNLVRGLPH--LKYSSEAL--CEAC 728
SVN + + HR LGHA+ R I + K N V L +++S+ + C C
Sbjct: 577 INNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDC 636
Query: 729 QKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWV 785
GK TK + K + + P + LH D+FGPV Y + D+ +R+ WV
Sbjct: 637 LIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWV 696
Query: 786 KFL--RHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFS 843
L R ++ +FT+ + ++ +F + V+ ++ D G E+ NK F ++GI+ ++
Sbjct: 697 YPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYT 756
Query: 844 CPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTP 903
+ +GV ER N TL RT++ S + H W A+ + I+N + + P +K+
Sbjct: 757 TTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDKSA 815
Query: 904 YELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIY-NIIH 962
+ DI+ PFG ++N K + + Y L S S G+ IY +
Sbjct: 816 RQHAGLAGLDITTILPFGQP-VIVNNHNPDSKIHPRGIPGYALHPSRNSYGYIIYLPSLK 874
Query: 963 QTVEESIQIRFDDK 976
+TV+ + + DK
Sbjct: 875 KTVDTTNYVILQDK 888
Score = 112 bits (280), Expect = 8e-24
Identities = 140/588 (23%), Positives = 260/588 (43%), Gaps = 79/588 (13%)
Query: 1003 KSPEDVAPEAEASEDFPTTS-----DPLQKKKRIVASHPEELIIGNKDAPVRTRSMLKPS 1057
+S ED E E S D +P + KKRI N A ++ +KP
Sbjct: 1195 RSLEDNETEIEVSRDTWNNKNMRSLEPPRSKKRI-----------NLIAAIKGVKSIKPV 1243
Query: 1058 EETLLSLKGFVSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMP-------KPKG 1110
TL + + K D +++A +E+ Q K + W PK
Sbjct: 1244 RTTLRYDEAITYNKDNKEKDR------YVEAYHKEISQLLKMNTWDTNKYYDRNDIDPK- 1296
Query: 1111 FHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFS 1170
VI + ++F N+K + T +KAR VA+G Q ++ + A+ +S +
Sbjct: 1297 -KVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIA 1350
Query: 1171 VNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWY 1230
++++ + Q+D+ SA+L I EE+Y++ PP N + + +L+KSLYGLKQ+ WY
Sbjct: 1351 LDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLN---DKLLRLRKSLYGLKQSGANWY 1407
Query: 1231 ERLSSFLL---QNEFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLM 1287
E + S+L+ + VRG + +KN + + ++VDD+I S + + K+ +
Sbjct: 1408 ETIKSYLINCCDMQEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTL 1461
Query: 1288 QAEFEMSMM------GELKY-FLGIQID-QRPGVTYIHQKKYTLELLKKFNM---SDCNI 1336
+ +++ ++ E++Y LG++I QR + +K E L K N+
Sbjct: 1462 KKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKK 1521
Query: 1337 SKTPMHPTCILEKEEV---SSKVCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQS 1390
+ P P ++++E+ + +K++ + +IG Y+ R D+L+ ++ A+
Sbjct: 1522 LRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHIL 1581
Query: 1391 DPRETHLTAVKRILKYLKGTTNLGLMYRKTS----EYTLSGFCDADFAGDRVERKSTSGS 1446
P L +++++ T + L++ K + L DA + G++ KS G+
Sbjct: 1582 FPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQPYYKSQIGN 1640
Query: 1447 CHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPI--- 1503
L ++ S + + ST EAE + ++ I + N+L L K PI
Sbjct: 1641 IFLLNGKVIGGKSTKASLTCTSTTEAEIHAV----SEAIPLLNNLSHLVQELNKKPIIKG 1696
Query: 1504 -YCDNTAAISLSKNPILHS-RAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
D+ + IS+ K+ R + K +RD V L + Y++T
Sbjct: 1697 LLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIET 1744
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (286), Expect = 2e-24
Identities = 108/424 (25%), Positives = 183/424 (42%), Gaps = 35/424 (8%)
Query: 560 LDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGD------GKTPVIND 613
LDSG SR + + + S D+ QK + I +IGD T
Sbjct: 33 LDSGASRTLIRSA---HHIHSASSNPDINVVDAQK-RNIPINAIGDLQFHFQDNTKTSIK 88
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
VL + ++LLS++++A F + + ++DG+VL + D Y + LL
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 674 SQKVKCLMSVNDEQW----------IWHRRLGHASLRKISQLSKLNLVRGLPH--LKYSS 721
+ + ++N+ HR L HA+ + I K N + + +SS
Sbjct: 146 PSNIS-VPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSS 204
Query: 722 --EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYELVIV 776
+ C C GK TK + K + ++ P + LH D+FGPV Y +
Sbjct: 205 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 264
Query: 777 DDYSRWTWVKFL--RHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFN 834
D+ +++ WV L R +D +FT + ++ +FQ+SV+ ++ D G E+ N+
Sbjct: 265 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 324
Query: 835 SQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRIS 894
GI+ ++ + +GV ER N TL + RT +Q S + H W AI + ++N ++
Sbjct: 325 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA 384
Query: 895 IRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKG 954
P +K+ + DIS PFG ++N K + + Y L S S G
Sbjct: 385 -SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYG 442
Query: 955 FRIY 958
+ IY
Sbjct: 443 YIIY 446
Score = 112 bits (280), Expect = 8e-24
Identities = 152/606 (25%), Positives = 263/606 (43%), Gaps = 107/606 (17%)
Query: 999 NQPIKSPEDVAPEAEASEDFPTTS-----DPLQKKKRIVASHPEELIIGNKDAPVRTRSM 1053
N +S ED E + S D T +P + KKRI LI A V+
Sbjct: 749 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRI------HLI-----AAVKAVKS 797
Query: 1054 LKPSEETLLSLKGFVSLIEPKSVDEAL-------EDKGWIQAMQEELDQFTKNDVWT--- 1103
+KP TL DEA+ E + +IQA +E++Q K W
Sbjct: 798 IKPIRTTL-------------RYDEAITYNKDIKEKEKYIQAYHKEVNQLLKMKTWDTDR 844
Query: 1104 ------LMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPV 1157
+ PK VI + ++F N K + T +KAR VA+G I + +T+ P
Sbjct: 845 YYDRKEIDPK----RVINSMFIF----NRKRDGT-HKARFVARG-----DIQHPDTYDPG 890
Query: 1158 ARLE-----AIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHV 1212
+ A+ +S ++++N + Q+D+ SA+L I EE+Y++ PP N + +
Sbjct: 891 MQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKL 947
Query: 1213 YKLKKSLYGLKQAPRAWYERLSSFLLQN---EFVRGKGDNTLFCRTYKNDILIVQIYVDD 1269
+LKKSLYGLKQ+ WYE + S+L++ E VRG + +KN + + ++VDD
Sbjct: 948 IRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDD 1001
Query: 1270 IIFGSANPSLCKEFSKLMQAEFEMSMM------GELKY-FLGIQID-QRPGVTYIHQKKY 1321
+I S + + K+ ++ +++ ++ E++Y LG++I QR + +
Sbjct: 1002 MILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENS 1061
Query: 1322 TLELLKKFNM---SDCNISKTPMHPTCI-----LEKEEVSSKVCQKLYRGMIGSLLYLTA 1373
E + K N+ P P LE EE K+ + +IG Y+
Sbjct: 1062 LTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGY 1121
Query: 1374 S-RPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEY----TLSGF 1428
R D+L+ ++ A+ P + L +++++ T + L++ K+ L
Sbjct: 1122 KFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVI 1181
Query: 1429 CDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMK 1488
DA + G++ KS G+ + L ++ S + + ST EAE ++++ +
Sbjct: 1182 SDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLL 1236
Query: 1489 NHLEDYGLSLKKVPI----YCDNTAAIS-LSKNPILHSRAKHIEVKYHYIRDHVQKGTLS 1543
N+L L K PI D+ + IS + N R + K +RD V L
Sbjct: 1237 NNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLH 1296
Query: 1544 LEYVDT 1549
+ Y++T
Sbjct: 1297 VCYIET 1302
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (286), Expect = 2e-24
Identities = 108/424 (25%), Positives = 183/424 (42%), Gaps = 35/424 (8%)
Query: 560 LDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGD------GKTPVIND 613
LDSG SR + + + S D+ QK + I +IGD T
Sbjct: 33 LDSGASRTLIRSA---HHIHSASSNPDINVVDAQK-RNIPINAIGDLQFHFQDNTKTSIK 88
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
VL + ++LLS++++A F + + ++DG+VL + D Y + LL
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 674 SQKVKCLMSVNDEQW----------IWHRRLGHASLRKISQLSKLNLVRGLPH--LKYSS 721
+ + ++N+ HR L HA+ + I K N + + +SS
Sbjct: 146 PSNIS-VPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSS 204
Query: 722 --EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYELVIV 776
+ C C GK TK + K + ++ P + LH D+FGPV Y +
Sbjct: 205 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 264
Query: 777 DDYSRWTWVKFL--RHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFN 834
D+ +++ WV L R +D +FT + ++ +FQ+SV+ ++ D G E+ N+
Sbjct: 265 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 324
Query: 835 SQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRIS 894
GI+ ++ + +GV ER N TL + RT +Q S + H W AI + ++N ++
Sbjct: 325 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA 384
Query: 895 IRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKG 954
P +K+ + DIS PFG ++N K + + Y L S S G
Sbjct: 385 -SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYG 442
Query: 955 FRIY 958
+ IY
Sbjct: 443 YIIY 446
Score = 107 bits (268), Expect = 2e-22
Identities = 148/601 (24%), Positives = 258/601 (42%), Gaps = 97/601 (16%)
Query: 999 NQPIKSPEDVAPEAEASEDFPTTS-----DPLQKKKRIVASHPEELIIGNKDAPVRTRSM 1053
N +S ED E + S D T +P + KKRI LI A V+
Sbjct: 749 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRI------HLI-----AAVKAVKS 797
Query: 1054 LKPSEETLLSLKGFVSLIEPKSVDEAL-------EDKGWIQAMQEELDQFTKNDVWT--- 1103
+KP TL DEA+ E + +I+A +E++Q K W
Sbjct: 798 IKPIRTTL-------------RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDK 844
Query: 1104 ------LMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPV 1157
+ PK VI + ++F N K + T +KAR VA+G Q + +
Sbjct: 845 YYDRKEIDPK----RVINSMFIF----NRKRDGT-HKARFVARGDIQHPDTYDSGMQSNT 895
Query: 1158 ARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKK 1217
A+ +S ++++N + Q+D+ SA+L I EE+Y++ PP N + + +LKK
Sbjct: 896 VHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKK 952
Query: 1218 SLYGLKQAPRAWYERLSSFLLQN---EFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGS 1274
SLYGLKQ+ WYE + S+L++ E VRG + ++N + + ++VDD++ S
Sbjct: 953 SLYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFENSQVTICLFVDDMVLFS 1006
Query: 1275 ANPSLCKEFSKLMQAEFEMSMMG------ELKY-FLGIQID-QRPGVTYIHQKKYTLELL 1326
N + K ++ +++ ++ E++Y LG++I QR + + E +
Sbjct: 1007 KNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKI 1066
Query: 1327 KKFNM---SDCNISKTPMHPTCI-----LEKEEVSSKVCQKLYRGMIGSLLYLTAS-RPD 1377
K N+ P P LE EE K+ + +IG Y+ R D
Sbjct: 1067 PKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFD 1126
Query: 1378 ILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEY----TLSGFCDADF 1433
+L+ ++ A+ P + L +++++ T + L++ K+ L DA +
Sbjct: 1127 LLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY 1186
Query: 1434 AGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLED 1493
G++ KS G+ + L ++ S + + ST EAE ++++ + N+L
Sbjct: 1187 -GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSY 1241
Query: 1494 YGLSLKKVPI----YCDNTAAIS-LSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVD 1548
L K PI D+ + IS + N R + K +RD V L + Y++
Sbjct: 1242 LIQELDKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIE 1301
Query: 1549 T 1549
T
Sbjct: 1302 T 1302
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (286), Expect = 2e-24
Identities = 108/424 (25%), Positives = 183/424 (42%), Gaps = 35/424 (8%)
Query: 560 LDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGD------GKTPVIND 613
LDSG SR + + + S D+ QK + I +IGD T
Sbjct: 33 LDSGASRTLIRSA---HHIHSASSNPDINVVDAQK-RNIPINAIGDLQFHFQDNTKTSIK 88
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
VL + ++LLS++++A F + + ++DG+VL + D Y + LL
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 674 SQKVKCLMSVNDEQW----------IWHRRLGHASLRKISQLSKLNLVRGLPH--LKYSS 721
+ + ++N+ HR L HA+ + I K N + + +SS
Sbjct: 146 PSNIS-VPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSS 204
Query: 722 --EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYELVIV 776
+ C C GK TK + K + ++ P + LH D+FGPV Y +
Sbjct: 205 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 264
Query: 777 DDYSRWTWVKFL--RHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFN 834
D+ +++ WV L R +D +FT + ++ +FQ+SV+ ++ D G E+ N+
Sbjct: 265 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 324
Query: 835 SQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRIS 894
GI+ ++ + +GV ER N TL + RT +Q S + H W AI + ++N ++
Sbjct: 325 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA 384
Query: 895 IRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKG 954
P +K+ + DIS PFG ++N K + + Y L S S G
Sbjct: 385 -SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYG 442
Query: 955 FRIY 958
+ IY
Sbjct: 443 YIIY 446
Score = 112 bits (280), Expect = 8e-24
Identities = 146/601 (24%), Positives = 264/601 (43%), Gaps = 97/601 (16%)
Query: 999 NQPIKSPEDVAPEAEASEDFPTTS-----DPLQKKKRIVASHPEELIIGNKDAPVRTRSM 1053
N +S ED E + S D T +P + KKRI LI A V+
Sbjct: 749 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRI------HLI-----AAVKAVKS 797
Query: 1054 LKPSEETLLSLKGFVSLIEPKSVDEAL-------EDKGWIQAMQEELDQFTKNDVWT--- 1103
+KP TL DEA+ E + +I+A +E++Q K + W
Sbjct: 798 IKPIRTTL-------------RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMNTWDTDK 844
Query: 1104 ------LMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPV 1157
+ PK VI + ++F N K + T +KAR VA+G Q + +
Sbjct: 845 YYDRKEIDPK----RVINSMFIF----NRKRDGT-HKARFVARGDIQHPDTYDSGMQSNT 895
Query: 1158 ARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKK 1217
A+ +S ++++N + Q+D+ SA+L I EE+Y++ PP N + + +LKK
Sbjct: 896 VHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKK 952
Query: 1218 SLYGLKQAPRAWYERLSSFLLQN---EFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGS 1274
SLYGLKQ+ WYE + S+L++ E VRG + +KN + + ++VDD+I S
Sbjct: 953 SLYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFS 1006
Query: 1275 ANPSLCKEFSKLMQAEFEMSMM------GELKY-FLGIQID-QRPGVTYIHQKKYTLELL 1326
+ + K+ ++ +++ ++ E++Y LG++I QR + + E +
Sbjct: 1007 KDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKI 1066
Query: 1327 KKFNM---SDCNISKTPMHPTCILEKEEV---SSKVCQKLY--RGMIGSLLYLTAS-RPD 1377
K N+ P P ++++E+ + +K++ + +IG Y+ R D
Sbjct: 1067 PKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFD 1126
Query: 1378 ILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTS----EYTLSGFCDADF 1433
+L+ ++ A+ P L +++++ T + L++ K + L DA +
Sbjct: 1127 LLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY 1186
Query: 1434 AGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLED 1493
G++ KS G+ + L ++ S + + ST EAE ++++ + N+L
Sbjct: 1187 -GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSH 1241
Query: 1494 YGLSLKKVPI----YCDNTAAIS-LSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVD 1548
L K PI D+ + IS + N R + K +RD V L + Y++
Sbjct: 1242 LVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIE 1301
Query: 1549 T 1549
T
Sbjct: 1302 T 1302
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 114 bits (286), Expect = 2e-24
Identities = 108/424 (25%), Positives = 183/424 (42%), Gaps = 35/424 (8%)
Query: 560 LDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGD------GKTPVIND 613
LDSG SR + + + S D+ QK + I +IGD T
Sbjct: 460 LDSGASRTLIRSA---HHIHSASSNPDINVVDAQK-RNIPINAIGDLQFHFQDNTKTSIK 515
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
VL + ++LLS++++A F + + ++DG+VL + D Y + LL
Sbjct: 516 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 572
Query: 674 SQKVKCLMSVNDEQW----------IWHRRLGHASLRKISQLSKLNLVRGLPH--LKYSS 721
+ + ++N+ HR L HA+ + I K N + + +SS
Sbjct: 573 PSNIS-VPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSS 631
Query: 722 --EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYELVIV 776
+ C C GK TK + K + ++ P + LH D+FGPV Y +
Sbjct: 632 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 691
Query: 777 DDYSRWTWVKFL--RHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFN 834
D+ +++ WV L R +D +FT + ++ +FQ+SV+ ++ D G E+ N+
Sbjct: 692 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 751
Query: 835 SQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRIS 894
GI+ ++ + +GV ER N TL + RT +Q S + H W AI + ++N ++
Sbjct: 752 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA 811
Query: 895 IRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKG 954
P +K+ + DIS PFG ++N K + + Y L S S G
Sbjct: 812 -SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYG 869
Query: 955 FRIY 958
+ IY
Sbjct: 870 YIIY 873
Score = 112 bits (279), Expect = 1e-23
Identities = 150/601 (24%), Positives = 260/601 (42%), Gaps = 97/601 (16%)
Query: 999 NQPIKSPEDVAPEAEASEDFPTTS-----DPLQKKKRIVASHPEELIIGNKDAPVRTRSM 1053
N +S ED E + S D T +P + KKRI LI A V+
Sbjct: 1176 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRI------HLI-----AAVKAVKS 1224
Query: 1054 LKPSEETLLSLKGFVSLIEPKSVDEAL-------EDKGWIQAMQEELDQFTKNDVWT--- 1103
+KP TL DEA+ E + +I+A +E++Q K W
Sbjct: 1225 IKPIRTTL-------------RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDE 1271
Query: 1104 ------LMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPV 1157
+ PK VI + ++F N+K + T +KAR VA+G Q + +
Sbjct: 1272 YYDRKEIDPK----RVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDSGMQSNT 1322
Query: 1158 ARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKK 1217
A+ +S ++++N + Q+D+ SA+L I EE+Y++ PP N + + +LKK
Sbjct: 1323 VHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKK 1379
Query: 1218 SLYGLKQAPRAWYERLSSFLLQN---EFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGS 1274
SLYGLKQ+ WYE + S+L+Q E VRG + +KN + + ++VDD++ S
Sbjct: 1380 SLYGLKQSGANWYETIKSYLIQQCGMEEVRG------WSCVFKNSQVTICLFVDDMVLFS 1433
Query: 1275 ANPSLCKEFSKLMQAEFEMSMMG------ELKY-FLGIQID-QRPGVTYIHQKKYTLELL 1326
N + K + ++ +++ ++ E++Y LG++I QR + + E +
Sbjct: 1434 KNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKI 1493
Query: 1327 KKFNM---SDCNISKTPMHPTCI-----LEKEEVSSKVCQKLYRGMIGSLLYLTAS-RPD 1377
K N+ P P LE EE K+ + +IG Y+ R D
Sbjct: 1494 PKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFD 1553
Query: 1378 ILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEY----TLSGFCDADF 1433
+L+ ++ A+ P + L +++++ T + L++ K+ L DA +
Sbjct: 1554 LLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY 1613
Query: 1434 AGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLED 1493
G++ KS G+ + L ++ S + + ST EAE ++++ + N+L
Sbjct: 1614 -GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSY 1668
Query: 1494 YGLSLKKVPI----YCDNTAAIS-LSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVD 1548
L K PI D+ + IS + N R + K +RD V L + Y++
Sbjct: 1669 LIQELDKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIE 1728
Query: 1549 T 1549
T
Sbjct: 1729 T 1729
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (284), Expect = 3e-24
Identities = 106/424 (25%), Positives = 179/424 (42%), Gaps = 35/424 (8%)
Query: 560 LDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGD------GKTPVIND 613
LDSG SR + + + S D+ QK + I +IGD T
Sbjct: 33 LDSGASRTLIRSA---HHIHSASSNPDINVVDAQK-RNIPINAIGDLQFHFQDNTKTSIK 88
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
VL + ++LLS++++A F + + ++DG+VL + D Y + LL
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 674 SQKVKCLMSVNDEQW----------IWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEA 723
+ + ++N+ HR L HA+ + I K N + +
Sbjct: 146 PSNIS-VPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSS 204
Query: 724 L----CEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYELVIV 776
C C GK TK + K + ++ P + LH D+FGPV Y +
Sbjct: 205 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 264
Query: 777 DDYSRWTWVKFL--RHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFN 834
D+ +++ WV L R +D +FT + ++ +FQ+SV+ ++ D G E+ N+
Sbjct: 265 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 324
Query: 835 SQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRIS 894
GI+ ++ + +GV ER N TL + RT +Q S + H W AI + ++N ++
Sbjct: 325 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA 384
Query: 895 IRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKG 954
P +K+ + DIS PFG ++N K + + Y L S S G
Sbjct: 385 -SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYG 442
Query: 955 FRIY 958
+ IY
Sbjct: 443 YIIY 446
Score = 113 bits (283), Expect = 4e-24
Identities = 146/601 (24%), Positives = 265/601 (43%), Gaps = 97/601 (16%)
Query: 999 NQPIKSPEDVAPEAEASEDFPTTS-----DPLQKKKRIVASHPEELIIGNKDAPVRTRSM 1053
N +S ED E + S D T +P + KKRI LI A V+
Sbjct: 749 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRI------HLI-----AAVKAVKS 797
Query: 1054 LKPSEETLLSLKGFVSLIEPKSVDEAL-------EDKGWIQAMQEELDQFTKNDVWT--- 1103
+KP TL DEA+ E + +I+A +E++Q K W
Sbjct: 798 IKPIRTTL-------------RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDE 844
Query: 1104 ------LMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPV 1157
+ PK VI + ++F N+K + T +KAR VA+G Q + +
Sbjct: 845 YYDRKEIDPK----RVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDSGMQSNT 895
Query: 1158 ARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKK 1217
A+ +S ++++N + Q+D+ SA+L I EE+Y++ PP N + + +LKK
Sbjct: 896 VHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKK 952
Query: 1218 SLYGLKQAPRAWYERLSSFLLQN---EFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGS 1274
SLYGLKQ+ WYE + S+L++ E VRG + +KN + + ++VDD+I S
Sbjct: 953 SLYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFS 1006
Query: 1275 ANPSLCKEFSKLMQAEFEMSMM------GELKY-FLGIQID-QRPGVTYIHQKKYTLELL 1326
+ + K+ ++ +++ ++ E++Y LG++I QR + + E +
Sbjct: 1007 KDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKI 1066
Query: 1327 KKFNM---SDCNISKTPMHPTCILEKEEV---SSKVCQKLY--RGMIGSLLYLTAS-RPD 1377
K N+ P P ++++E+ + +K++ + +IG Y+ R D
Sbjct: 1067 PKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFD 1126
Query: 1378 ILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTS----EYTLSGFCDADF 1433
+L+ ++ A+ P L +++++ T + L++ K + L DA +
Sbjct: 1127 LLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY 1186
Query: 1434 AGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLED 1493
G++ KS G+ + L ++ S + + ST EAE ++++ + N+L
Sbjct: 1187 -GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSY 1241
Query: 1494 YGLSLKKVPI----YCDNTAAISLSKNPILHS-RAKHIEVKYHYIRDHVQKGTLSLEYVD 1548
L K PI D+ + IS+ K+ R + K +RD V L + Y++
Sbjct: 1242 LIQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIE 1301
Query: 1549 T 1549
T
Sbjct: 1302 T 1302
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 114 bits (284), Expect = 3e-24
Identities = 108/424 (25%), Positives = 183/424 (42%), Gaps = 35/424 (8%)
Query: 560 LDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGD------GKTPVIND 613
LDSG SR + + + S D+ QK + I +IGD T
Sbjct: 460 LDSGASRTLIRSA---HHIHSASSNPDINVVDAQK-RNIPINAIGDLQFHFQDNTKTSIK 515
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
VL + ++LLS++++A F + + ++DG+VL + D Y + LL
Sbjct: 516 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVQYGDFYWVSKRYLL 572
Query: 674 SQKVKCLMSVNDEQW----------IWHRRLGHASLRKISQLSKLNLVRGLPH--LKYSS 721
+ + ++N+ HR L HA+ + I K N + + +SS
Sbjct: 573 PSNIS-VPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSS 631
Query: 722 --EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYELVIV 776
+ C C GK TK + K + ++ P + LH D+FGPV Y +
Sbjct: 632 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 691
Query: 777 DDYSRWTWVKFL--RHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFN 834
D+ +++ WV L R +D +FT + ++ +FQ+SV+ ++ D G E+ N+
Sbjct: 692 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 751
Query: 835 SQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRIS 894
GI+ ++ + +GV ER N TL + RT +Q S + H W AI + ++N ++
Sbjct: 752 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA 811
Query: 895 IRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKG 954
P +K+ + DIS PFG ++N K + + Y L S S G
Sbjct: 812 -SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYG 869
Query: 955 FRIY 958
+ IY
Sbjct: 870 YIIY 873
Score = 111 bits (277), Expect = 2e-23
Identities = 146/601 (24%), Positives = 263/601 (43%), Gaps = 97/601 (16%)
Query: 999 NQPIKSPEDVAPEAEASEDFPTTS-----DPLQKKKRIVASHPEELIIGNKDAPVRTRSM 1053
N +S ED E + S D T +P + KKRI LI A V+
Sbjct: 1176 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRI------HLI-----AAVKAVKS 1224
Query: 1054 LKPSEETLLSLKGFVSLIEPKSVDEAL-------EDKGWIQAMQEELDQFTKNDVWT--- 1103
+KP TL DEA+ E + +I+A +E++Q K W
Sbjct: 1225 IKPIRTTL-------------RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDE 1271
Query: 1104 ------LMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPV 1157
+ PK VI + ++F N+K + T +KAR VA+G Q T +
Sbjct: 1272 YYDRKEIDPK----RVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDTGMQSNT 1322
Query: 1158 ARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKK 1217
A+ +S ++++N + Q+D+ SA+L I EE+Y++ PP N + + +LKK
Sbjct: 1323 VHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKK 1379
Query: 1218 SLYGLKQAPRAWYERLSSFLLQN---EFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGS 1274
S YGLKQ+ WYE + S+L++ E VRG + +KN + + ++VDD+I S
Sbjct: 1380 SHYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFS 1433
Query: 1275 ANPSLCKEFSKLMQAEFEMSMM------GELKY-FLGIQID-QRPGVTYIHQKKYTLELL 1326
+ + K+ ++ +++ ++ E++Y LG++I QR + + E +
Sbjct: 1434 KDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKI 1493
Query: 1327 KKFNM---SDCNISKTPMHPTCILEKEEV---SSKVCQKLY--RGMIGSLLYLTAS-RPD 1377
K N+ P P ++++E+ + +K++ + +IG Y+ R D
Sbjct: 1494 PKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFD 1553
Query: 1378 ILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTS----EYTLSGFCDADF 1433
+L+ ++ A+ P L +++++ T + L++ K + L DA +
Sbjct: 1554 LLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY 1613
Query: 1434 AGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLED 1493
G++ KS G+ L ++ S + + ST EAE ++++ + N+L
Sbjct: 1614 -GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSY 1668
Query: 1494 YGLSLKKVPI----YCDNTAAISLSKNPILHS-RAKHIEVKYHYIRDHVQKGTLSLEYVD 1548
L K PI D+ + IS+ K+ R + K +RD V L + Y++
Sbjct: 1669 LIQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIE 1728
Query: 1549 T 1549
T
Sbjct: 1729 T 1729
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 108 bits (271), Expect = 9e-23
Identities = 50/97 (51%), Positives = 69/97 (70%)
Query: 1072 EPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVT 1131
EPKSV AL+D GW QAMQEELD ++N W L+P P +++G KWVF+ KL+ G +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 1132 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLIS 1168
R KARLVA+G+ Q+EGI + ET++PV R IR +++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 102 bits (255), Expect = 6e-21
Identities = 108/447 (24%), Positives = 186/447 (41%), Gaps = 47/447 (10%)
Query: 691 HRRLGHASLRKISQLSKLN-LVRGLPHLKYSSEALCEACQKGKFTKKPF---KAKNVVST 746
H+R+GH +++I K N L +K +E C+ C+ K TK+ N +
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 747 TRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRW--TWVKFLRHKDETHTMFTNFITQ 804
P +D+FGPV + + K+Y L++VD+ +R+ T F ++ + I
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 805 VQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVERKNITLQEM 864
V+ +F V + SD G EF N E+ F S+GI H + + NG ER T+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 865 ARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQP---DISYFHPFG 921
A T++++S++ FW A+ +A I+N + + K P + RQP + F PFG
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKS-TGKLPLKAI-SRQPVTVRLMSFLPFG 799
Query: 922 STCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRI-------------YNIIH------ 962
+ N + K L L S G++ Y I +
Sbjct: 800 EKGIIWNHNHK--KLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTSDNYTIPNYTMDGR 857
Query: 963 ----QTVEESIQIRFDDKLGSEKSKLFERFADLSIDCSEANQPIKSPEDVAPEAEASE-- 1016
Q + +S Q D+ ++ + + + + N+PI ED+ E E S+
Sbjct: 858 VRNTQNINKSHQFSSDNDDEEDQIETVTNLCEALENYEDDNKPITRLEDLFTEEELSQID 917
Query: 1017 ---DFPTTSDPLQKKKRIVASHPEELIIGNKDAPVR---TRSMLKPSEETLLSLKGFVSL 1070
+P+ S+ L+ V S EE G+ D T + + + +LS K F S
Sbjct: 918 SNAKYPSPSNNLEGDLDYVFSDVEE--SGDYDVESELSTTNNSISTDKNKILSNKDFNSE 975
Query: 1071 IEPKSVD-EALEDKGWIQAMQEELDQF 1096
+ + ++ KG I + D++
Sbjct: 976 LASTEISISGIDKKGLINTSHIDEDKY 1002
Score = 100 bits (250), Expect = 2e-20
Identities = 107/458 (23%), Positives = 196/458 (42%), Gaps = 46/458 (10%)
Query: 1113 VIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVN 1172
++ T +F K N KAR+V +G +Q Y+ I++ + + N
Sbjct: 1322 IVPTNTIFTKKRNGI-----YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANN 1375
Query: 1173 HNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEH-VYKLKKSLYGLKQAPRAWYE 1231
N+ + +D+ AFL + EE+Y+ P H V KL K+LYGLKQ+P+ W +
Sbjct: 1376 RNMFMKTLDINHAFLYAKLEEEIYIPHP-------HDRRCVVKLNKALYGLKQSPKEWND 1428
Query: 1232 RLSSFLLQNEFVRGKGDNTLFCRTYKND--ILIVQIYVDDIIFGSANPSLCKEFSKLMQA 1289
L +L N G DN+ Y+ + L++ +YVDD + ++N EF +++
Sbjct: 1429 HLRQYL--NGI--GLKDNSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKS 1484
Query: 1290 EFEMSMMGEL------KYFLGIQI--DQRPGVTYIHQKKYTLELLKKFNMSDCNISKT-- 1339
FE+ + G L LG+ + ++R G + K + + KK+N I K+
Sbjct: 1485 NFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSI 1544
Query: 1340 ---------PMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLT-ASRPDILFSVHLCARFQ 1389
P + +EE V + + ++G L Y+ R DI F+V AR
Sbjct: 1545 PHMSTYKIDPKKDVLQMSEEEFRQGVLK--LQQLLGELNYVRHKCRYDIEFAVKKVARLV 1602
Query: 1390 SDPRETHLTAVKRILKYLKGTTNLGLMYRK--TSEYTLSGFCDADFAGDRVERKSTSGSC 1447
+ P E + +I++YL ++G+ Y + + + DA G + +S G
Sbjct: 1603 NYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVI 1661
Query: 1448 HFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGL-SLKKVPIYCD 1506
+ G N+ S + +S+ EAE + + +K L++ G + + D
Sbjct: 1662 LWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITD 1721
Query: 1507 NTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSL 1544
+ AI + K +K I++ +++ ++ L
Sbjct: 1722 SKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKL 1759
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 68.2 bits (165), Expect = 2e-10
Identities = 42/108 (38%), Positives = 59/108 (53%), Gaps = 9/108 (8%)
Query: 1369 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGF 1428
+YLT +RPD+ F+V+ ++F S R + AV ++L Y+KGT GL Y TS+ L F
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1429 CDADFAGDRVERKSTSGSCH-----FLG----SNLVTWSSKRQNTIAL 1467
D+D+A R+S +G C FLG S L +RQN AL
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLVPLWFLGALRKSILSPGLLQRQNIEAL 108
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 58.9 bits (141), Expect = 1e-07
Identities = 62/246 (25%), Positives = 100/246 (40%), Gaps = 16/246 (6%)
Query: 672 LLSQKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKG 731
+L QK M W LG+ L+ + + + + R ++ + A C+ CQ+
Sbjct: 831 VLPQKEALAMIQQMHAWT---HLGNRKLKLLIEKTDFLIPRASTLIEQVTSA-CKVCQQV 886
Query: 732 KFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHK 791
A RP ID F VK G KY LV VD +S W F +
Sbjct: 887 NAGATRVPAGKRTRGNRPGVYWEID-FTEVKPH-YAGYKYLLVFVDTFSGWVEA-FPTRQ 943
Query: 792 DETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQN 851
+ H + + ++ F + + SD+G F ++ + L GI+ C PQ +
Sbjct: 944 ETAHIVAKKILEEIFPRFGLPKV-IGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSS 1002
Query: 852 GVVERKNITLQEMARTMMQESSMA--KHFWAEAINTACYIQNRISIRPILEKTPYELCKG 909
G VER N T++E + E+ + + + A+ A NR + TPYE+ G
Sbjct: 1003 GQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNTPNRFGL------TPYEILYG 1056
Query: 910 RQPDIS 915
P +S
Sbjct: 1057 GPPPLS 1062
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 55.5 bits (132), Expect = 1e-06
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 16/238 (6%)
Query: 677 VKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGKFTKK 736
VK + +D Q I + A + + L K+ + P+++ CQ+ T
Sbjct: 599 VKIIPPQSDRQKIVLQAHNLAHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNA 658
Query: 737 PFKAKNVV----STTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKD 792
KA + +P + ID GP+ G Y LV+VD + +TW+ +
Sbjct: 659 SNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQ--GYLYVLVVVDGMTGFTWLYPTKAPS 716
Query: 793 ETHTMFT-NFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQN 851
+ T+ + N +T + + + SD G F + F + +GI FS P PQ
Sbjct: 717 TSATVKSLNVLTSI-----AIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSG 771
Query: 852 GVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKG 909
VERKN ++ + ++ W + + N + P+L+ TP++L G
Sbjct: 772 SKVERKNSDIKRLLTKLLVGRPTK---WYDLLPVVQLALNN-TYSPVLKYTPHQLLFG 825
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 55.1 bits (131), Expect = 2e-06
Identities = 50/193 (25%), Positives = 80/193 (40%), Gaps = 12/193 (6%)
Query: 725 CEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTW 784
C+ CQ+ RP ID F VK G KY LV VD +S W
Sbjct: 737 CKVCQQVNAGATRVPEGKRTRGNRPGVYWEID-FTEVKPH-YAGYKYLLVFVDTFSGWVE 794
Query: 785 VKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSC 844
+ ++ H + + ++ F + + SD+G F ++ + L + GI+ C
Sbjct: 795 A-YPTRQETAHMVAKKILEEIFPRFGLPKV-IGSDNGPAFVSQVSQGLARTLGINWKLHC 852
Query: 845 PRTPQQNGVVERKNITLQEMARTMMQESSMA--KHFWAEAINTACYIQNRISIRPILEKT 902
PQ +G VER N T++E + E+ + + + A+ A NR + T
Sbjct: 853 AYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNTPNRFGL------T 906
Query: 903 PYELCKGRQPDIS 915
PYE+ G P +S
Sbjct: 907 PYEILYGGPPPLS 919
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 53.9 bits (128), Expect = 3e-06
Identities = 45/167 (26%), Positives = 74/167 (43%), Gaps = 12/167 (7%)
Query: 744 VSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDETHTMFT-NFI 802
V +P + +ID GP+ + G + LV+VD + + W+ + + T+ N +
Sbjct: 878 VKPLKPFDKFYIDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNML 935
Query: 803 TQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVERKNITLQ 862
T + + + SD G F + F D +GI FS P PQ +G VERKN ++
Sbjct: 936 TSI-----AIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIK 990
Query: 863 EMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKG 909
+ T + AK W + + N S P + TP++L G
Sbjct: 991 RLL-TKLLIGRPAK--WYDLLPVVQLALNN-SYSPSSKYTPHQLLFG 1033
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 53.1 bits (126), Expect = 6e-06
Identities = 44/163 (26%), Positives = 73/163 (43%), Gaps = 12/163 (7%)
Query: 748 RPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDETHTMFT-NFITQVQ 806
+P + ID GP+ + G + LV+VD + + W+ + + T+ N +T +
Sbjct: 884 KPFDKFFIDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSI- 940
Query: 807 KEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVERKNITLQEMAR 866
+ + SD G F + F D ++GI FS P PQ +G VERKN ++ +
Sbjct: 941 ----AVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLL- 995
Query: 867 TMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKG 909
T + AK W + + N S P + TP++L G
Sbjct: 996 TKLLVGRPAK--WYDLLPVVQLALNN-SYSPSSKYTPHQLLFG 1035
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 52.4 bits (124), Expect = 1e-05
Identities = 55/194 (28%), Positives = 84/194 (42%), Gaps = 10/194 (5%)
Query: 725 CEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTW 784
C+AC + +K K V RP ID F VK + G KY LV VD +S W
Sbjct: 890 CKACAQVNASKSAVKQGTRVRGHRPGTHWEID-FTEVKP-GLYGYKYLLVFVDTFSGW-- 945
Query: 785 VKFLRHKDETHTMFTN-FITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFS 843
V+ K ET + T + ++ F + + +D+G F +K + + + G+
Sbjct: 946 VEAFPTKKETAKVVTKKLLEEIFPRFGMPQV-LGTDNGPAFVSKVSQTVADLLGVDWKLH 1004
Query: 844 CPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTP 903
C PQ +G VER N T++E + + W + A Y + R + P TP
Sbjct: 1005 CAYRPQSSGQVERMNRTIKETLTKL--TLATGSRDWVLLLPLALY-RARNTPGP-HGLTP 1060
Query: 904 YELCKGRQPDISYF 917
YE+ G P + F
Sbjct: 1061 YEILYGAPPPLVNF 1074
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.330 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,008,066
Number of Sequences: 164201
Number of extensions: 6675441
Number of successful extensions: 19790
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 19603
Number of HSP's gapped (non-prelim): 140
length of query: 1549
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1426
effective length of database: 39,777,331
effective search space: 56722474006
effective search space used: 56722474006
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0240.16