BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0240.1
(1666 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 218 1e-55
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 203 3e-51
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 188 9e-47
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 188 9e-47
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 184 1e-45
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 182 9e-45
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 182 9e-45
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 179 4e-44
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 150 4e-35
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 138 1e-31
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 136 4e-31
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 136 4e-31
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 135 9e-31
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 135 9e-31
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 124 2e-27
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 123 5e-27
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 116 6e-25
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 112 7e-24
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 109 7e-23
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 108 2e-22
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 218 bits (554), Expect = 1e-55
Identities = 145/476 (30%), Positives = 246/476 (51%), Gaps = 15/476 (3%)
Query: 769 CSH*PRVEGQDGEITQGIQRLFRLGL**NAWPQSRIGGIE--LPIKEDKKPVKQLPRRFH 826
C H R G D +I I++ F+ + R G E + +KE +P++Q PR
Sbjct: 893 CEHLKRENGDDRKIWDVIEQ-FQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIP 951
Query: 827 PDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEY 886
+ +I++ I+++L K IR ++ W + VV V KK+G +R+CID+R +N + +
Sbjct: 952 LALKPEIRKMIQKMLNQKVIRESKS-PWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAH 1010
Query: 887 HMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGL 946
+P E + S AG + ++ D +G+ QI + E+ TAF L +EW V+PFGL
Sbjct: 1011 PLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSEL--FEWNVLPFGL 1068
Query: 947 KNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMNP 1006
+ A +Q M I D + VY+DD+++ S + L ++++ R+RK G+K+
Sbjct: 1069 VISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRA 1128
Query: 1007 LKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSKKQLQSLLGKINFLRRFIVN 1066
KC ++LG V G+E + K + + PT+ K+LQS LG + + R+FI+N
Sbjct: 1129 SKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILN 1188
Query: 1067 LSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSPPVMAPP------IGGKPMKL 1120
++ S + L+ K + WE E + AF ELK + PV+A P G +P +
Sbjct: 1189 FAQIASSLTSLISAKV--AWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMI 1246
Query: 1121 YISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYI 1180
Y A+ IG++LAQE + ++ I + S+ L+ AETRY + + L + F+ + K I
Sbjct: 1247 YTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTII 1306
Query: 1181 KPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAVADFL 1236
+ VF+ + + +L L R+ +W++ + E+ + L A K AVAD L
Sbjct: 1307 YGTAITVFTDHKPLISLLKGSPLADRLWRWSIEILEFDVKIVYL-AGKANAVADAL 1361
Score = 83.6 bits (205), Expect = 4e-15
Identities = 59/216 (27%), Positives = 102/216 (46%), Gaps = 11/216 (5%)
Query: 1441 YVIMGNELFKKNVDGTLLKCLSDDDALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPT 1500
Y I+G L ++ + + + +H+G+ H GIK W + + YWP
Sbjct: 1440 YKIVGGVLKNTEIEEQSRSVVPEKIRTPLLKELHEGMLAGH-FGIKKMWRMVHRKFYWPQ 1498
Query: 1501 I---MKDCMEYAKGCQDCQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQH 1557
+ +++C+ C H+ + S L +P A DL+ S + +
Sbjct: 1499 MRVCVENCVRTCAKCLCANDHSKL----TSSLTPYRMTFPLEIVACDLMDV--GLSVQGN 1552
Query: 1558 KYIIVAIDYFTKWVEAIPLQNVTQDTVID-FIQNHIVYRFGLPESLTTDQGTVFVGQKVA 1616
+YI+ ID FTK+ A+P+ + +TV+ F++ + +P L TDQG FV A
Sbjct: 1553 RYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFA 1612
Query: 1617 SFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIK 1652
FT I+ +T+ Y ++ANG VE NKT++ ++K
Sbjct: 1613 QFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMK 1648
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 203 bits (517), Expect = 3e-51
Identities = 205/864 (23%), Positives = 380/864 (43%), Gaps = 92/864 (10%)
Query: 808 ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNG- 866
+L +K+D+ + R H V +I+ ++++L++ K + + + + ++ V KK+
Sbjct: 306 QLRLKDDEPVYTKNYRSPHSQV-EEIQAQVQKLIKDKIVEPS-VSQYNSPLLLVPKKSSP 363
Query: 867 -----KMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEE 921
K R+ ID+R +N D++ +P + ++D +Y S LD SG++QI + E
Sbjct: 364 NSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEG 423
Query: 922 DVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSP 981
T+F G+Y + +PFGLK A ++QR+M F + +Y+DD++V
Sbjct: 424 SRDITSFSTSN--GSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGC 481
Query: 982 SRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDT 1041
S L +L + F + R+Y LK++P KC+F + FLG KGI + K I +
Sbjct: 482 SEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNY 541
Query: 1042 NPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKA 1101
P + + N+ RRFI N ++ ++ + L KK F W E QKAF LK+
Sbjct: 542 PVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRL--CKKNVPFEWTDECQKAFIHLKS 599
Query: 1102 YLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTM 1161
L +P ++ P K + A+ G++L Q + N + + Y SR E+ +
Sbjct: 600 QLINPTLLQYPDFSKEFCITTDASKQACGAVLTQ-NHNGHQLPVAYASRAFTKGESNKST 658
Query: 1162 IEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTY 1221
E+ ++++ + + YI V + + + ++ S S++ + L L EY+ T
Sbjct: 659 TEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTV 718
Query: 1222 APLKAVKGQAVADFLVDHTLPKEIVTYVGVQPWKLFFDGSSHKNGTGIGMFIVSPGGTPT 1281
LK K VAD L T+ KE+ K+ TG + + T
Sbjct: 719 EYLKG-KDNHVADALSRITI-KEL------------------KDITGNILKVT------T 752
Query: 1282 KFKFRIKKKCSNNEAEYEALISSLEILIALGARNVVVKGDSELVIKQLTKEYKCISENLA 1341
+F+ R +K C+ E + + + EI V+ + V+ + C+
Sbjct: 753 RFQSR-QKSCAGKE-QLDLQKQTKEIASEPNVYEVITNDEVRKVVTLQLNDSICL----- 805
Query: 1342 KYYTKANNLLAKFDDARLGHVSRIDNQEANELAQIASGYMVDKYRLKELIEVKEKLNPSD 1401
+ ++A++D L +D + + ++ +G + ++ ++K
Sbjct: 806 --FKHGKKIIARYDVGDLYTNGILDLDQFLQRLELQAG-------IYDISQIK------- 849
Query: 1402 LNVLVIDNMAPKDWRKPIVDYLQNPVGTTDRKTKYRAMSYVIMGNELFKKNVDGTLLKCL 1461
MAP W+K I +++ + D+ + MGN++ KN+ LL +
Sbjct: 850 --------MAP--WKK-IFEHV-----SIDK--------FKNMGNKIL-KNLKVALLNPV 884
Query: 1462 ----SDDDALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQR 1517
++ + +S +HD GI ++ YW + K EY + CQ CQ+
Sbjct: 885 TQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQK 944
Query: 1518 HAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQ 1577
+H + F +D IG + P S ++Y + I TK++ AIP+
Sbjct: 945 AKTTKHTKTPMTITETPEHAFDRVVVDTIGPL-PKSENGNEYAVTLICDLTKYLVAIPIA 1003
Query: 1578 NVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQAN 1637
N + TV I + ++G ++ TD GT + + + IK +TST ++ Q
Sbjct: 1004 NKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTV 1063
Query: 1638 GQVEAANKTLISLIKNILVENLKD 1661
G VE +++TL I++ + + D
Sbjct: 1064 GVVERSHRTLNEYIRSYISTDKTD 1087
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 188 bits (478), Expect = 9e-47
Identities = 131/421 (31%), Positives = 216/421 (51%), Gaps = 22/421 (5%)
Query: 832 KIKEEIERLLRCKFIRTARYVD----WLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYH 887
+++ +I+ LL+ IR + W+ P + R+ +DF+ LN T D Y
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197
Query: 888 MPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLK 947
+P + S +Y + LD SG++QI + E D+ KTAF G YE++ +PFGLK
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLN--GKYEFLRLPFGLK 255
Query: 948 NAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMNPL 1007
NA A +QR+++ I + I VYIDDI+V S D +LR + K L++N
Sbjct: 256 NAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLE 315
Query: 1008 KCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSKKQLQSLLGKINFLRRFIVNL 1067
K F +FLG++V GI+ + K +AI + PPTS K+L+ LG ++ R+FI +
Sbjct: 316 KSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDY 375
Query: 1068 SEKTKSFSPLLR-----LKKEDTFR----WEAEHQKAFDELKAYLSSPPVMAPPIGGKPM 1118
++ K + L R +K + + + ++F++LK+ L S ++A P KP
Sbjct: 376 AKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPF 435
Query: 1119 KLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKY 1178
L A+N IG++L+Q+D+ ++R I Y+SR LN E Y IEK L + +S L+
Sbjct: 436 HLTTDASNWAIGAVLSQDDQ-GRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRA 494
Query: 1179 YIKPI-DVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYS--LTYAPLKAVKGQAVADF 1235
Y+ + V++ + + L ++++ +W + EY+ L Y P K VAD
Sbjct: 495 YLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKP---GKSNVVADA 551
Query: 1236 L 1236
L
Sbjct: 552 L 552
Score = 34.7 bits (78), Expect = 2.3
Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Query: 1480 AHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSIIKPWPFR 1539
AH+ +++ L + Y+P + CQ C+ + +H L +P P
Sbjct: 704 AHRGPTEIRLQLLEK-YYFPRMSSTIRLQTSSCQCCKLYKYERHPNKPNL----QPTPIP 758
Query: 1540 GWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLP 1599
+ +++ I+ + + Y+ ID F+K+ + LQ+ + + + + Y F P
Sbjct: 759 NYPCEIL-HIDIFALEKRLYLS-CIDKFSKFAKLFHLQSKASVHLRETLVEALHY-FTAP 815
Query: 1600 ESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIK 1652
+ L +D + V ++ S I L + ++ NGQVE + T + + +
Sbjct: 816 KVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYR 868
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 188 bits (478), Expect = 9e-47
Identities = 125/412 (30%), Positives = 212/412 (51%), Gaps = 17/412 (4%)
Query: 831 VKIKEEIERLLRCKFIRTARYV----DWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEY 886
++++ +++ +L IR + W+ P K RV ID+R LN T D Y
Sbjct: 220 IEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRY 279
Query: 887 HMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGL 946
+P + ++ +Y + +D G++QI + EE +SKTAF G YE++ MPFGL
Sbjct: 280 PIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS--GHYEYLRMPFGL 337
Query: 947 KNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMNP 1006
+NA AT+QR MN I + VY+DDI++ S S + L ++ F ++ LK+
Sbjct: 338 RNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQL 397
Query: 1007 LKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSKKQLQSLLGKINFLRRFIVN 1066
KC F +FLG +V GI+ N K KAI+ PT K++++ LG + R+FI N
Sbjct: 398 DKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPN 457
Query: 1067 LSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSPPVMAPPIGGKPMKLYISATN 1126
++ K + L+ K+ + E+ +AF++LKA + P++ P K L A+N
Sbjct: 458 YADIAKPMTSCLK-KRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASN 516
Query: 1127 GTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVM 1186
+G++L+Q I ++SR LND E Y+ IEK L + ++ ++Y+ +
Sbjct: 517 LALGAVLSQNG-----HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFL 571
Query: 1187 VFSHYDIIK--HMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAVADFL 1236
+ S + ++ H L +P +++ +W + L+EY +K K +VAD L
Sbjct: 572 IASDHQPLRWLHNLKEP--GAKLERWRVRLSEYQFKIDYIKG-KENSVADAL 620
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 184 bits (468), Expect = 1e-45
Identities = 121/444 (27%), Positives = 229/444 (51%), Gaps = 17/444 (3%)
Query: 807 IELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNG 866
+EL + + P++ P P + + +EI + L+ IR ++ ++ V+ V KK G
Sbjct: 404 VELTQENYRLPIRNYP--LPPGKMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEG 460
Query: 867 KMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKT 926
+R+ +D++ LN + Y +P+ E ++ G + LD S Y+ I + + D K
Sbjct: 461 TLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKL 520
Query: 927 AFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQ 986
AFRCP G +E++VMP+G+ A A +Q +NTI + E+ + Y+DDI++ S S +
Sbjct: 521 AFRCPR--GVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEH 578
Query: 987 LLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTS 1046
+ H++ ++++ L +N KC F F+G+ + +KG + +L P +
Sbjct: 579 VKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKN 638
Query: 1047 KKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSP 1106
+K+L+ LG +N+LR+FI S+ T + L LKK+ ++W +A + +K L SP
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNL--LKKDVRWKWTPTQTQAIENIKQCLVSP 696
Query: 1107 PVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLC 1166
PV+ K + L A++ +G++L+Q+ ++ K + Y S ++ A+ Y++ +K
Sbjct: 697 PVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEM 756
Query: 1167 LCLYFSCVKLKYY----IKPIDVMVFSHYDIIKHML--SKPILHSRIGKWALALTEYS-- 1218
L + S ++Y I+P ++ H ++I + S+P + R+ +W L L +++
Sbjct: 757 LAIIKSLKHWRHYLESTIEPFKILT-DHRNLIGRITNESEP-ENKRLARWQLFLQDFNFE 814
Query: 1219 LTYAPLKAVKGQAVADFLVDHTLP 1242
+ Y P A +VD T P
Sbjct: 815 INYRPGSANHIADALSRIVDETEP 838
Score = 68.2 bits (165), Expect = 2e-10
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 1484 GIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSII---KPWPFRG 1540
GI++ + + W I K EY + C CQ + H P L I +PW
Sbjct: 929 GIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW--ES 986
Query: 1541 WALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPL-QNVTQDTVIDFIQNHIVYRFGLP 1599
++D I + S + + V +D F+K +P +++T + ++ FG P
Sbjct: 987 LSMDFITALPESSG--YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
Query: 1600 ESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIKNILVENL 1659
+ + D +F Q F + + S PY Q +GQ E N+T+ L++ + +
Sbjct: 1045 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1104
Query: 1660 KDGIKH 1665
+ H
Sbjct: 1105 NTWVDH 1110
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 182 bits (461), Expect = 9e-45
Identities = 120/444 (27%), Positives = 229/444 (51%), Gaps = 17/444 (3%)
Query: 807 IELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNG 866
+EL + + P++ P P + + +EI + L+ IR ++ ++ V+ V KK G
Sbjct: 404 VELTQENYRLPIRNYP--LPPGKMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEG 460
Query: 867 KMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKT 926
+R+ +D++ LN + Y +P+ E ++ G + LD S Y+ I + + D K
Sbjct: 461 TLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKL 520
Query: 927 AFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQ 986
AFRCP G +E++VMP+G+ A A +Q +NTI + E+ + Y+D+I++ S S +
Sbjct: 521 AFRCPR--GVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEH 578
Query: 987 LLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTS 1046
+ H++ ++++ L +N KC F F+G+ + +KG + +L P +
Sbjct: 579 VKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKN 638
Query: 1047 KKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSP 1106
+K+L+ LG +N+LR+FI S+ T + L LKK+ ++W +A + +K L SP
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNL--LKKDVRWKWTPTQTQAIENIKQCLVSP 696
Query: 1107 PVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLC 1166
PV+ K + L A++ +G++L+Q+ ++ K + Y S ++ A+ Y++ +K
Sbjct: 697 PVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEM 756
Query: 1167 LCLYFSCVKLKYY----IKPIDVMVFSHYDIIKHML--SKPILHSRIGKWALALTEYS-- 1218
L + S ++Y I+P ++ H ++I + S+P + R+ +W L L +++
Sbjct: 757 LAIIKSLKHWRHYLESTIEPFKILT-DHRNLIGRITNESEP-ENKRLARWQLFLQDFNFE 814
Query: 1219 LTYAPLKAVKGQAVADFLVDHTLP 1242
+ Y P A +VD T P
Sbjct: 815 INYRPGSANHIADALSRIVDETEP 838
Score = 68.2 bits (165), Expect = 2e-10
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 1484 GIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSII---KPWPFRG 1540
GI++ + + W I K EY + C CQ + H P L I +PW
Sbjct: 929 GIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW--ES 986
Query: 1541 WALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPL-QNVTQDTVIDFIQNHIVYRFGLP 1599
++D I + S + + V +D F+K +P +++T + ++ FG P
Sbjct: 987 LSMDFITALPESSG--YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
Query: 1600 ESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIKNILVENL 1659
+ + D +F Q F + + S PY Q +GQ E N+T+ L++ + +
Sbjct: 1045 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1104
Query: 1660 KDGIKH 1665
+ H
Sbjct: 1105 NTWVDH 1110
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 182 bits (461), Expect = 9e-45
Identities = 120/444 (27%), Positives = 229/444 (51%), Gaps = 17/444 (3%)
Query: 807 IELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNG 866
+EL + + P++ P P + + +EI + L+ IR ++ ++ V+ V KK G
Sbjct: 404 VELTQENYRLPIRNYP--LPPGKMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEG 460
Query: 867 KMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKT 926
+R+ +D++ LN + Y +P+ E ++ G + LD S Y+ I + + D K
Sbjct: 461 TLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKL 520
Query: 927 AFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQ 986
AFRCP G +E++VMP+G+ A A +Q +NTI + E+ + Y+D+I++ S S +
Sbjct: 521 AFRCPR--GVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEH 578
Query: 987 LLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTS 1046
+ H++ ++++ L +N KC F F+G+ + +KG + +L P +
Sbjct: 579 VKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKN 638
Query: 1047 KKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSP 1106
+K+L+ LG +N+LR+FI S+ T + L LKK+ ++W +A + +K L SP
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNL--LKKDVRWKWTPTQTQAIENIKQCLVSP 696
Query: 1107 PVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLC 1166
PV+ K + L A++ +G++L+Q+ ++ K + Y S ++ A+ Y++ +K
Sbjct: 697 PVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEM 756
Query: 1167 LCLYFSCVKLKYY----IKPIDVMVFSHYDIIKHML--SKPILHSRIGKWALALTEYS-- 1218
L + S ++Y I+P ++ H ++I + S+P + R+ +W L L +++
Sbjct: 757 LAIIKSLKHWRHYLESTIEPFKILT-DHRNLIGRITNESEP-ENKRLARWQLFLQDFNFE 814
Query: 1219 LTYAPLKAVKGQAVADFLVDHTLP 1242
+ Y P A +VD T P
Sbjct: 815 INYRPGSANHIADALSRIVDETEP 838
Score = 68.2 bits (165), Expect = 2e-10
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 1484 GIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSII---KPWPFRG 1540
GI++ + + W I K EY + C CQ + H P L I +PW
Sbjct: 929 GIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW--ES 986
Query: 1541 WALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPL-QNVTQDTVIDFIQNHIVYRFGLP 1599
++D I + S + + V +D F+K +P +++T + ++ FG P
Sbjct: 987 LSMDFITALPESSG--YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
Query: 1600 ESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIKNILVENL 1659
+ + D +F Q F + + S PY Q +GQ E N+T+ L++ + +
Sbjct: 1045 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1104
Query: 1660 KDGIKH 1665
+ H
Sbjct: 1105 NTWVDH 1110
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 179 bits (455), Expect = 4e-44
Identities = 126/410 (30%), Positives = 203/410 (48%), Gaps = 15/410 (3%)
Query: 832 KIKEEIERLLRCKFIRTARYVD----WLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYH 887
+++ +I+ +L IRT+ W+ K R+ ID+R LN T D +
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281
Query: 888 MPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLK 947
+P + ++ Y + +D G++QI + E VSKTAF G YE++ MPFGLK
Sbjct: 282 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKH--GHYEYLRMPFGLK 339
Query: 948 NAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMNPL 1007
NA AT+QR MN I + VY+DDI+V S S D+ L L FE++ K LK+
Sbjct: 340 NAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLD 399
Query: 1008 KCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSKKQLQSLLGKINFLRRFIVNL 1067
KC F FLG V+ GI+ N K +AI PT K++++ LG + R+FI N
Sbjct: 400 KCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNF 459
Query: 1068 SEKTKSFSPLLRLK-KEDTFRWEAEHQKAFDELKAYLSSPPVMAPPIGGKPMKLYISATN 1126
++ K + L+ K DT E+ AF +LK +S P++ P K L A++
Sbjct: 460 ADIAKPMTKCLKKNMKIDT--TNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASD 517
Query: 1127 GTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVM 1186
+G++L+Q+ + Y+SR LN+ E Y+ IEK L + ++ ++Y+
Sbjct: 518 VALGAVLSQDG-----HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFE 572
Query: 1187 VFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAVADFL 1236
+ S + + + +S++ +W + L+E+ +K K VAD L
Sbjct: 573 ISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKG-KENCVADAL 621
Score = 33.5 bits (75), Expect = 5.0
Identities = 27/119 (22%), Positives = 56/119 (46%), Gaps = 19/119 (15%)
Query: 437 KPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTGSS 496
KP ++ K E + K L+D G+T+N+ K + D+ + + +S
Sbjct: 12 KPQYITIKYKENNL-KCLIDTGSTVNMTSKNIF-------------DLPIQNTSTFIHTS 57
Query: 497 LGAIMLNITVGTVAR-----STLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIW 550
G +++N ++ ++ + F++ P NY+LLLGR+ + A S Q ++++
Sbjct: 58 NGPLIVNKSIIIPSKILFPTTNEFLLHPFSENYDLLLGRKLLAEAKATISYRDQEVTLY 116
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 150 bits (378), Expect = 4e-35
Identities = 107/403 (26%), Positives = 201/403 (49%), Gaps = 25/403 (6%)
Query: 833 IKEEIERLLRCKFIRTARYVDWLANVVPVIKK------NGKMRVCIDFRDLNAATPKDEY 886
+ E+++LL+ IR +R + + V KK N R+ IDFR LN T D Y
Sbjct: 197 VNNEVKQLLKDGIIRPSRS-PYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRY 255
Query: 887 HMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGL 946
MP M++ + ++ + LD SGY+QI++AE D KT+F G G YE+ +PFGL
Sbjct: 256 PMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNG--GKYEFCRLPFGL 313
Query: 947 KNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMNP 1006
+NA + +QR ++ + + I VY+DD+++ S + D + H+ + + ++++
Sbjct: 314 RNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQ 373
Query: 1007 LKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSKKQLQSLLGKINFLRRFIVN 1066
K F + ++LGF+V K G + + K KAI + P +++S LG ++ R FI +
Sbjct: 374 EKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKD 433
Query: 1067 LSEKTKSFSPLLR---------LKKEDTFRWEAEHQKAFDELKAYLSSPPVMAP-PIGGK 1116
+ + + +L+ + K+ + + AF L+ L+S V+ P K
Sbjct: 434 FAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKK 493
Query: 1117 PMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKL 1176
P L A+ IG++L+QE R I +SR L E Y E+ L + ++ KL
Sbjct: 494 PFDLTTDASASGIGAVLSQEG-----RPITMISRTLKQPEQNYATNERELLAIVWALGKL 548
Query: 1177 KYYI-KPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYS 1218
+ ++ ++ +F+ + + ++ +++I +W + +++
Sbjct: 549 QNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHN 591
Score = 40.4 bits (93), Expect = 0.041
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 19/205 (9%)
Query: 1451 KNVDGTLLKCLSDDDALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAK 1510
KNV +L ++ + ++A H+ A Q IK + Y+P + E
Sbjct: 726 KNV---VLDITDKNEQIEIVTAEHNRAHRAAQENIKQ----VLRDYYFPKMGSLAKEVVA 778
Query: 1511 GCQDCQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKW 1570
C+ C + +H EL P + G + + S K + ID F+K+
Sbjct: 779 NCRVCTQAKYDRHPKKQELGETPIP-SYTGEMVHI-----DIFSTDRKLFLTCIDKFSKY 832
Query: 1571 VEAIPLQNVTQDTVIDFIQN--HIVYRFGLPESLTTDQGTVFVGQKVASFTE-SWGIKLL 1627
P V T++D I+ F +++ D F + V S + S+GI ++
Sbjct: 833 AIVQP---VVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIV 889
Query: 1628 TSTPYYAQANGQVEAANKTLISLIK 1652
+ P ++ +NGQVE + TL + +
Sbjct: 890 NAPPLHSSSNGQVERFHSTLAEIAR 914
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 138 bits (347), Expect = 1e-31
Identities = 115/446 (25%), Positives = 204/446 (44%), Gaps = 31/446 (6%)
Query: 809 LPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVI------ 862
+ + + K +K P ++ P + ++I+ LL K I+ ++ ++ P
Sbjct: 238 IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS----PHMAPAFLVNNEA 293
Query: 863 -KKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEE 921
K+ GK R+ ++++ +N AT D Y++P + ++ G + S D SG+ Q+ + +E
Sbjct: 294 EKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 353
Query: 922 DVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSP 981
TAF CP G YEW V+PFGLK A + +QR M+ F F F VY+DDI+V S
Sbjct: 354 SRPLTAFTCP--QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSN 410
Query: 982 SRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDT 1041
+ +D LLH+ ++ ++G+ ++ K +FLG + +G + ++
Sbjct: 411 NEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHINK 469
Query: 1042 NPPT--SKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDEL 1099
P T KKQLQ LG + + +I L++ K +LK+ +RW E ++
Sbjct: 470 FPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQ--AKLKENVPWRWTKEDTLYMQKV 527
Query: 1100 KAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQ---EDENSKERAIFYLSRVLNDAE 1156
K L P + P+ + + + A++ G ML + + E Y S AE
Sbjct: 528 KKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAE 587
Query: 1157 TRYTMIEKLCLCLYFSCVKLKYYIKPIDVMV---FSHYDIIKHMLSKPILHSRIG---KW 1210
Y +K L + + K Y+ P+ ++ +H+ ++ K S++G +W
Sbjct: 588 KNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG--DSKLGRNIRW 645
Query: 1211 ALALTEYSLTYAPLKAVKGQAVADFL 1236
L+ YS +K ADFL
Sbjct: 646 QAWLSHYSFDVEHIKGTDNH-FADFL 670
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 136 bits (343), Expect = 4e-31
Identities = 114/446 (25%), Positives = 204/446 (45%), Gaps = 31/446 (6%)
Query: 809 LPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVI------ 862
+ + + K +K P ++ P + ++I+ LL K I+ ++ ++ P
Sbjct: 238 IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS----PHMAPAFLVNNEA 293
Query: 863 -KKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEE 921
K+ GK R+ ++++ +N AT D Y++P + ++ G + S D SG+ Q+ + +E
Sbjct: 294 EKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 353
Query: 922 DVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSP 981
TAF CP G YEW V+PFGLK A + +QR M+ F F F VY+DDI+V S
Sbjct: 354 SRPLTAFTCP--QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSN 410
Query: 982 SRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDT 1041
+ +D LLH+ ++ ++G+ ++ K +FLG + +G + ++
Sbjct: 411 NEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHINK 469
Query: 1042 NPPT--SKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDEL 1099
P T KKQLQ LG + + +I L++ K +LK+ ++W E ++
Sbjct: 470 FPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQ--AKLKENVPWKWTKEDTLYMQKV 527
Query: 1100 KAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQ---EDENSKERAIFYLSRVLNDAE 1156
K L P + P+ + + + A++ G ML + + E Y S AE
Sbjct: 528 KKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAE 587
Query: 1157 TRYTMIEKLCLCLYFSCVKLKYYIKPIDVMV---FSHYDIIKHMLSKPILHSRIG---KW 1210
Y +K L + + K Y+ P+ ++ +H+ ++ K S++G +W
Sbjct: 588 RNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG--DSKLGRNIRW 645
Query: 1211 ALALTEYSLTYAPLKAVKGQAVADFL 1236
L+ YS +K ADFL
Sbjct: 646 QAWLSHYSFDVEHIKGTDNH-FADFL 670
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 136 bits (343), Expect = 4e-31
Identities = 114/446 (25%), Positives = 204/446 (45%), Gaps = 31/446 (6%)
Query: 809 LPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVI------ 862
+ + + K +K P ++ P + ++I+ LL K I+ ++ ++ P
Sbjct: 238 IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS----PHMAPAFLVNNEA 293
Query: 863 -KKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEE 921
K+ GK R+ ++++ +N AT D Y++P + ++ G + S D SG+ Q+ + +E
Sbjct: 294 EKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 353
Query: 922 DVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSP 981
TAF CP G YEW V+PFGLK A + +QR M+ F F F VY+DDI+V S
Sbjct: 354 SRPLTAFTCP--QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSN 410
Query: 982 SRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDT 1041
+ +D LLH+ ++ ++G+ ++ K +FLG + +G + ++
Sbjct: 411 NEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHINK 469
Query: 1042 NPPT--SKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDEL 1099
P T KKQLQ LG + + +I L++ K +LK+ ++W E ++
Sbjct: 470 FPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQ--AKLKENVPWKWTKEDTLYMQKV 527
Query: 1100 KAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQ---EDENSKERAIFYLSRVLNDAE 1156
K L P + P+ + + + A++ G ML + + E Y S AE
Sbjct: 528 KKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAE 587
Query: 1157 TRYTMIEKLCLCLYFSCVKLKYYIKPIDVMV---FSHYDIIKHMLSKPILHSRIG---KW 1210
Y +K L + + K Y+ P+ ++ +H+ ++ K S++G +W
Sbjct: 588 RNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG--DSKLGRNIRW 645
Query: 1211 ALALTEYSLTYAPLKAVKGQAVADFL 1236
L+ YS +K ADFL
Sbjct: 646 QAWLSHYSFDVEHIKGTDNH-FADFL 670
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 135 bits (340), Expect = 9e-31
Identities = 114/446 (25%), Positives = 203/446 (44%), Gaps = 31/446 (6%)
Query: 809 LPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKN--- 865
+ + + K +K P ++ P + ++I+ LL K I+ ++ ++ P N
Sbjct: 239 IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS----PHMAPAFLVNNEA 294
Query: 866 ----GKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEE 921
G R+ ++++ +N AT D Y++P + ++ G + S D SG+ Q+ + +E
Sbjct: 295 ENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 354
Query: 922 DVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSP 981
TAF CP G YEW V+PFGLK A + +QR M+ F F F VY+DDIVV S
Sbjct: 355 SRPLTAFTCP--QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDIVVFSN 411
Query: 982 SRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDT 1041
+ +D LLH+ ++ ++G+ ++ K +FLG + +G + ++
Sbjct: 412 NEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHINK 470
Query: 1042 NPPT--SKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDEL 1099
P T KKQLQ LG + + +I NL++ + +LK+ ++W E ++
Sbjct: 471 FPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQ--AKLKENVPWKWTKEDTLYMQKV 528
Query: 1100 KAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQ---EDENSKERAIFYLSRVLNDAE 1156
K L P + P+ + + + A++ G ML + + E Y S AE
Sbjct: 529 KKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAE 588
Query: 1157 TRYTMIEKLCLCLYFSCVKLKYYIKPIDVMV---FSHYDIIKHMLSKPILHSRIG---KW 1210
Y +K L + + K Y+ P+ ++ +H+ ++ K S++G +W
Sbjct: 589 RNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG--DSKLGRNIRW 646
Query: 1211 ALALTEYSLTYAPLKAVKGQAVADFL 1236
L+ YS +K ADFL
Sbjct: 647 QAWLSHYSFDVEHIKGTDNH-FADFL 671
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 135 bits (340), Expect = 9e-31
Identities = 114/446 (25%), Positives = 203/446 (44%), Gaps = 31/446 (6%)
Query: 809 LPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVI------ 862
+ + + K +K P ++ P + ++I+ LL K I+ ++ ++ P
Sbjct: 233 IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS----PHMAPAFLVNNEA 288
Query: 863 -KKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEE 921
K+ GK R+ ++++ +N AT D Y+ P + ++ G + S D SG+ Q+ + +E
Sbjct: 289 EKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 348
Query: 922 DVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSP 981
TAF CP G YEW V+PFGLK A + +QR M+ F F F VY+DDI+V S
Sbjct: 349 SRPLTAFTCP--QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSN 405
Query: 982 SRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDT 1041
+ +D LLH+ ++ ++G+ ++ K +FLG + +G + ++
Sbjct: 406 NEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHINK 464
Query: 1042 NPPT--SKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDEL 1099
P T KKQLQ LG + + +I L++ K +LK+ ++W E ++
Sbjct: 465 FPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQ--AKLKENVPWKWTKEDTLYMQKV 522
Query: 1100 KAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQ---EDENSKERAIFYLSRVLNDAE 1156
K L P + P+ + + + A++ G ML + + E Y S AE
Sbjct: 523 KKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAE 582
Query: 1157 TRYTMIEKLCLCLYFSCVKLKYYIKPIDVMV---FSHYDIIKHMLSKPILHSRIG---KW 1210
Y +K L + + K Y+ P+ ++ +H+ ++ K S++G +W
Sbjct: 583 KNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG--DSKLGRNIRW 640
Query: 1211 ALALTEYSLTYAPLKAVKGQAVADFL 1236
L+ YS +K ADFL
Sbjct: 641 QAWLSHYSFDVEHIKGTDNH-FADFL 665
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 124 bits (312), Expect = 2e-27
Identities = 102/382 (26%), Positives = 170/382 (43%), Gaps = 17/382 (4%)
Query: 863 KKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEED 922
++ GK R+ ++++ +N AT D +++P + ++ G S D SG+ Q+ + EE
Sbjct: 288 RRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEES 347
Query: 923 VSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPS 982
TAF CP G ++W V+PFGLK A + +QR M T + + F VY+DDI+V S S
Sbjct: 348 QKLTAFTCP--QGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSNS 404
Query: 983 RDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTN 1042
D H+ + + KYG+ ++ K +FLG + KG +N +
Sbjct: 405 ELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEI-DKGTHCPQNHILENIHKF 463
Query: 1043 PP--TSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELK 1100
P KK LQ LG + + +I L+E K ++LKK+ T+ W ++K
Sbjct: 464 PDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQ--VKLKKDVTWNWTQSDSDYVKKIK 521
Query: 1101 AYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYT 1160
L S P + P + + A++ G +L + E Y S AE Y
Sbjct: 522 KNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYH 581
Query: 1161 MIEKLCLCLYFSCVKLKYYIKPIDVMV------FSHYDIIKHMLSKPILHSRIGKWALAL 1214
+K L + K Y+ P+ V F+++ ++ L R+ +W
Sbjct: 582 SNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYF--LRINLKGDSKQGRLVRWQNWF 639
Query: 1215 TEYSLTYAPLKAVKGQAVADFL 1236
++Y L+ VK +AD L
Sbjct: 640 SKYQFDVEHLEGVK-NVLADCL 660
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 123 bits (308), Expect = 5e-27
Identities = 108/441 (24%), Positives = 188/441 (42%), Gaps = 21/441 (4%)
Query: 813 EDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVV---PVIKKNGKMR 869
+ K VK P + P + +I+ LL K I+ ++ + ++ GK R
Sbjct: 224 DPKTVVKVKPMSYSPSDREEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKR 283
Query: 870 VCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFR 929
+ ++++ +N AT D +++P + ++ G + S D SG Q+ + +E TAF
Sbjct: 284 MVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFT 343
Query: 930 CPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVV-KSPSRDDQLL 988
CP G Y+W V+PFGLK A + + + + + VY+DDI+V + R + +
Sbjct: 344 CP--QGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYI 401
Query: 989 HLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPP--TS 1046
H+ R K G+ ++ K +FLG + +G +N + P
Sbjct: 402 HVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEI-DQGTHCPQNHILEHIHKFPDRIED 460
Query: 1047 KKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSP 1106
KKQLQ LG + + +I L+ K +LK++ T+ W + ++K L S
Sbjct: 461 KKQLQRFLGILTYASDYIPKLASIRKPLQS--KLKEDSTWTWNDTDSQYMAKIKKNLKSF 518
Query: 1107 PVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLC 1166
P + P + + A+ G +L + NS E Y S AE Y EK
Sbjct: 519 PKLYHPEPNDKLVIETDASEEFWGGIL-KAIHNSHEYICRYASGSFKAAERNYHSNEKEL 577
Query: 1167 LCLYFSCVKLKYYIKPIDVMV------FSHYDIIKHMLSKPILHSRIGKWALALTEYSLT 1220
L + K Y+ P ++ F+H+ + L R+ +W + L++Y
Sbjct: 578 LAVIRVIKKFSIYLTPSRFLIRTDNKNFTHF--VNINLKGDRKQGRLVRWQMWLSQYDFD 635
Query: 1221 YAPLKAVKGQAVADFLVDHTL 1241
+ K ADFL ++TL
Sbjct: 636 VEHIAGTK-NVFADFLQENTL 655
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 116 bits (290), Expect = 6e-25
Identities = 88/261 (33%), Positives = 134/261 (50%), Gaps = 11/261 (4%)
Query: 808 ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKN-G 866
E +E+ PV + R L ++ E+ RL I Y W A +V + KK G
Sbjct: 431 EFRTEENAVPVFKRARPVPYGSLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTG 490
Query: 867 KMRVCIDFR--DLNAATPKDEYH-MPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDV 923
K+RVC DF+ LNAA KDE+H +P +E + G Y S +D Y Q+ + EE
Sbjct: 491 KIRVCADFKCSGLNAAL-KDEFHPLPTSEDIFSRLKGTVY-SQIDLKDAYLQVELDEEAQ 548
Query: 924 SKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSR 983
G ++++ M FGLK A A++Q++M+ + T + VY DDI++ + S
Sbjct: 549 KLAVINTHR--GIFKYLRMTFGLKPAPASFQKIMDKMVSGL--TGVAVYWDDIIISASSI 604
Query: 984 DDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNP 1043
++ LR+ FER ++YG +++ KCAF FLGF V + G + K +AI
Sbjct: 605 EEHEKILRELFERFKEYGFRVSAEKCAFAQKQVTFLGF-VDEHGRRPDSKKTEAIRSMKA 663
Query: 1044 PTSKKQLQSLLGKINFLRRFI 1064
PT +KQL S LG ++L R +
Sbjct: 664 PTDQKQLASFLGAADWLSRMM 684
Score = 68.2 bits (165), Expect = 2e-10
Identities = 49/185 (26%), Positives = 84/185 (44%), Gaps = 23/185 (12%)
Query: 1468 IAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPAS 1527
I + +H+G H ++MK R ++W + D + C +CQ ++ + V
Sbjct: 785 IVLKQLHEG----HPGIVQMKQKA-RSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVP- 838
Query: 1528 ELHSIIKPWP-----FRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQD 1582
+ PWP ++ +D G +N C Y++V +D TK+ E ++++
Sbjct: 839 -----LNPWPVPEAPWKRIHIDFAGPLNGC------YLLVVVDAKTKYAEVKLTRSISAV 887
Query: 1583 TVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEA 1642
T ID ++ I G PE++ +D GT A +S GI+ TS YY ++NG E
Sbjct: 888 TTIDLLEE-IFSIHGYPETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAER 946
Query: 1643 ANKTL 1647
TL
Sbjct: 947 FVDTL 951
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 112 bits (281), Expect = 7e-24
Identities = 84/332 (25%), Positives = 151/332 (45%), Gaps = 7/332 (2%)
Query: 858 VVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIF 917
V PV K +G+ R+ +D+R++N P + ++ + +Y + LD +G+
Sbjct: 5 VYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHP 64
Query: 918 IAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIV 977
I E TAF G Y W +P G N+ A + + + + +QVY+DDI
Sbjct: 65 ITPESYWLTAFTWQGK--QYCWTRLPQGFLNSPALFTADVVDLLKEIPN--VQVYVDDIY 120
Query: 978 VKSPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKA 1037
+ + + L K F+ + + G ++ K G +FLGF + K+G +
Sbjct: 121 LSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTK 180
Query: 1038 ILDTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFD 1097
+L+ PP KQLQS+LG +NF R FI N +E + L+ K W E+ K +
Sbjct: 181 LLNITPPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLN 240
Query: 1098 ELKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAET 1157
+ L++ + + +L I + +E K + I YL+ V + AE
Sbjct: 241 MVIEALNTASNLEERL--PEQRLVIKVNTSPSAGYVRYYNETGK-KPIMYLNYVFSKAEL 297
Query: 1158 RYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFS 1189
+++M+EKL ++ + +K +++V+S
Sbjct: 298 KFSMLEKLLTTMHKALIKAMDLAMGQEILVYS 329
Score = 65.1 bits (157), Expect = 2e-09
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 4/160 (2%)
Query: 1497 YWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQ 1556
+WP + KD ++ CQ C L PF + +D IG + P S+
Sbjct: 635 WWPNMRKDVVKQLGRCQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPP--SQG 692
Query: 1557 HKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVA 1616
+ Y++V +D T + P + + + + +++ +P+ + +DQG F A
Sbjct: 693 YLYVLVVVDGMTGFTWLYPTKAPSTSATVKSL--NVLTSIAIPKVIHSDQGAAFTSSTFA 750
Query: 1617 SFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIKNILV 1656
+ + GI L STPY+ Q+ +VE N + L+ +LV
Sbjct: 751 EWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLV 790
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 109 bits (272), Expect = 7e-23
Identities = 99/340 (29%), Positives = 156/340 (45%), Gaps = 33/340 (9%)
Query: 836 EIERLLRCKFIR--------TARYVDWLANVVPVI--KKNGKMRVCIDFRDLNAATPKDE 885
+I LL+ K IR TA V + P+ +K GK R+ +++ LN T D+
Sbjct: 1421 QINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQ 1480
Query: 886 YHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFG 945
Y +P ++ + S D SG+ Q+ + EE V TAF L YEW+VMPFG
Sbjct: 1481 YSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKL--YEWLVMPFG 1538
Query: 946 LKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMN 1005
LKNA A +QR M+ +F E F+ VYIDDI+V S + + HL + ++ GL ++
Sbjct: 1539 LKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLILS 1597
Query: 1006 PLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPP--TSKKQLQSLLGKINFLRRF 1063
P K G DFLG + I++ + I D + + + ++S LG +++ R +
Sbjct: 1598 PTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSYARNY 1657
Query: 1064 IVNLSEKTKSFSPLLRLKKEDT--FRWEAEHQKAFDELKAYLSS-PPVMAPPIGGKPMKL 1120
I ++ + + LR K T R E K ++K + + P + PP
Sbjct: 1658 IQDIGKLVQP----LRQKMAPTGDKRMNPETWKMVRQIKEKVKNLPDLQLPP----KDSF 1709
Query: 1121 YISATNGTIGS-------MLAQEDENSKERAIFYLSRVLN 1153
I T+G + +++ D S ER Y S N
Sbjct: 1710 IIIETDGCMTGWGAVCKWKMSKHDPRSTERICAYASGSFN 1749
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 108 bits (269), Expect = 2e-22
Identities = 94/374 (25%), Positives = 161/374 (42%), Gaps = 10/374 (2%)
Query: 816 KPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFR 875
+P KQ P +P I+ I LL+ + + V PV K +GK R+ +D+R
Sbjct: 177 RPQKQYP--INPKAKASIQTVINDLLKQGVLIQQNSI-MNTPVYPVPKPDGKWRMVLDYR 233
Query: 876 DLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALG 935
++N P + ++ S +Y + LD +G+ I E TAF G
Sbjct: 234 EVNKTIPLIAAQNQHSAGILSSIFRGKYKTTLDLSNGFWAHSITPESYWLTAFTWLGQ-- 291
Query: 936 TYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSFE 995
Y W +P G N+ A + + + + +QVY+DDI + + L L K F
Sbjct: 292 QYCWTRLPQGFLNSPALFTADVVDLLKEVPN--VQVYVDDIYISHDDPREHLEQLEKVFS 349
Query: 996 RMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSKKQLQSLLG 1055
+ G ++ K +FLGF + K+G + + + +L+ PP KQLQS+LG
Sbjct: 350 LLLNAGYVVSLKKSEIAQHEVEFLGFNITKEGRGLTETFKQKLLNITPPRDLKQLQSILG 409
Query: 1056 KINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSPPVMAPPIGG 1115
+NF R FI N SE K ++ W ++ + + + L+S +
Sbjct: 410 LLNFARNFIPNFSELVKPLYNIIATANGKYITWTTDNSQQLQNIISMLNSAENLEE--RN 467
Query: 1116 KPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVK 1175
++L + + +E +K R I YL+ V AE ++T EKL ++ +K
Sbjct: 468 PEVRLIMKVNTSPSAGYIRFYNEFAK-RPIMYLNYVYTKAEVKFTNTEKLLTTIHKGLIK 526
Query: 1176 LKYYIKPIDVMVFS 1189
+++V+S
Sbjct: 527 ALDLGMGQEILVYS 540
Score = 67.4 bits (163), Expect = 3e-10
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 1497 YWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSIIKPW----PFRGWALDLIGEINPC 1552
+WP + KD ++ + C+ C + + I++P PF + +D IG + P
Sbjct: 845 WWPNLRKDVVKVIRQCKQCL----VTNAATLAAPPILRPERPVKPFDKFFIDYIGPLPPS 900
Query: 1553 SSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVG 1612
+ H ++V +D T +V P + + + + +++ +P+ + +DQG F
Sbjct: 901 NGYLH--VLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTSIAVPKVIHSDQGAAFTS 956
Query: 1613 QKVASFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIKNILV 1656
A + ++ GI+L STPY+ Q++G+VE N + L+ +LV
Sbjct: 957 ATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLV 1000
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.140 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,894,039
Number of Sequences: 164201
Number of extensions: 8977821
Number of successful extensions: 29855
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 29305
Number of HSP's gapped (non-prelim): 365
length of query: 1666
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1542
effective length of database: 39,613,130
effective search space: 61083446460
effective search space used: 61083446460
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0240.1