BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0239.15
(483 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP13... 52 3e-06
YA88_AQUAE (O67178) Hypothetical protein AQ_1088 39 0.030
YA72_AQUAE (O67167) Hypothetical protein AQ_1072 35 0.56
OGT1_RAT (P56558) UDP-N-acetylglucosamine--peptide N-acetylgluco... 35 0.56
OGT1_HUMAN (O15294) UDP-N-acetylglucosamine--peptide N-acetylglu... 35 0.56
YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I 33 1.6
IF2A_THEVO (Q97BP2) Probable translation initiation factor 2 alp... 33 1.6
IF2A_THEAC (Q9HIX3) Probable translation initiation factor 2 alp... 33 1.6
N145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (... 33 2.1
S24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-rela... 32 3.7
HSS_RHILO (Q98H64) Homospermidine synthase (EC 2.5.1.44) (HSS) 32 3.7
HS49_YEAST (Q99181) HSH49 protein 32 3.7
CAQ2_MOUSE (O09161) Calsequestrin, cardiac muscle isoform precur... 32 4.8
YTE5_BACAN (Q9RMZ0) Hypothetical cell-wall amidase pXO2-42/BXB00... 31 6.2
HM39_CAEEL (Q22812) Homeobox protein ceh-39 31 6.2
EMB5_CAEEL (P34703) Abnormal embryogenesis protein 5 31 6.2
DPOL_PYRSD (Q51334) DNA polymerase (EC 2.7.7.7) (Deep vent DNA p... 31 8.1
ADNP_RAT (Q9JKL8) Activity-dependent neuroprotector (Activity-de... 31 8.1
>LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)
(Leucine-rich PPR-motif containing protein)
Length = 1273
Score = 52.4 bits (124), Expect = 3e-06
Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)
Query: 154 FDKMNELGYVTFLS-FNNLIGMYMRLGQPLKVHELVHDMKERNIPMSAFAYHAWMNSYAA 212
+D + +LG V +S +N L+ +Y++ + + M+E NI + Y + SY
Sbjct: 29 WDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCN 88
Query: 213 LNDLVGVEKIYELMKLEVETKIDWLTYSNLAAIYVKAKQFEKAELMLRKLEQAVKPRKRE 272
+ D+ G KI MK + + + +S L + +A E AE +L + A +
Sbjct: 89 VGDIEGASKILGFMKTK-DLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPD 147
Query: 273 AYHCLLSLYAGTGNLEKVYSLWDSL-KSVTPVLNVSYLCMISALKRLNDMEGLIRCFKEW 331
Y LL+ YA G+++ V + + K +++ L +I + + + + +K++
Sbjct: 148 TYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKAGYLSMSQKFWKKF 207
Query: 332 --ESRYGHCDLRLISAVISAYLSHDMSEEAAL--VFKDAIKKSKGPFFKIREMFMIFFLE 387
E RY + LI +++ L E+ AL + + K GP +F FFL+
Sbjct: 208 TCERRYIPDAMNLILLLVTEKL-----EDVALQILLACPVSKEDGP-----SVFGSFFLQ 257
Query: 388 KC 389
C
Sbjct: 258 HC 259
Score = 34.3 bits (77), Expect = 0.74
Identities = 49/230 (21%), Positives = 100/230 (43%), Gaps = 23/230 (10%)
Query: 14 LRHLCTAVTEADRPAKGRSLYQRLSELEKTGMSASQTLDQYISEGKVAGKKELMSIVKEL 73
L +L ++++++ AK L Q +LEK + + + Y + + ++K+
Sbjct: 464 LYNLIDSMSDSEVQAKEEHLRQYFHQLEKMNVKIPENI--YRGIRNLLESYHVPELIKDA 521
Query: 74 -----RKYRRFQDALQIMKW-MESRVESPLDYNYAVHLDLVCKNEGVVAAENYFNSLPPL 127
RK FQ +Q+ +ES +E+ N + L + + EN +L
Sbjct: 522 HLLVERKNLDFQKTVQLTSSELESTLETLKAENQPIRDVLKQLILVLCSEENMQKALELK 581
Query: 128 AMNKYT-------YGALLNCYCKELMVNKALAHFDKMNELGYVTFLSFNNLIGMYMRLGQ 180
A KY Y AL+N C+ V AL ++ + L L N +G+ L +
Sbjct: 582 A--KYESDMVTGGYAALINLCCRHDKVEDALNLKEEFDRLDSSAVLDTGNYLGLVRVLAK 639
Query: 181 PLKVHE---LVHDMKERNI---PMSAFAYHAWMNSYAALNDLVGVEKIYE 224
K+ + ++ +MKE+++ +A ++ +N A ++ V++++E
Sbjct: 640 HGKLQDAIKILKEMKEKDVLIKDTTALSFFHMLNGAALRGEIETVKQLHE 689
>YA88_AQUAE (O67178) Hypothetical protein AQ_1088
Length = 761
Score = 38.9 bits (89), Expect = 0.030
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 143 KELMVNKALAHFDKMNELGYVTFLSFNN---LIGMYMRL-GQPLKVHELVHDMKERNIPM 198
++L ++ F + + Y T LS L+G+Y L G+P K EL+ + E ++
Sbjct: 9 RKLFKSRNTHDFSNLCKENYQTLLSSEEGKILLGIYHFLSGEPQKAEELLSQVSENSL-- 66
Query: 199 SAFAYHAWMNSYAALNDL------VG-VEKIYELMKLEVE-TKIDWLTYSNLAAIYVKAK 250
NS L+DL +G VE ++K ++ + +D Y+ L A+Y
Sbjct: 67 ---------NSAQGLSDLGLLYFFLGRVEDAERVLKKALKFSDVDDALYARLGALYYSQG 117
Query: 251 QFEKAELMLRKLEQAVKPRKREAYHCLLSLYAGTGNLEKVYSLWDSLKSVTP 302
+ E+A+ + ++ P K E + L L+ G LEK L++ + P
Sbjct: 118 KLEEAQHYWERA-LSLNPNKVEILYNLGVLHLNKGELEKALDLFERALRLKP 168
>YA72_AQUAE (O67167) Hypothetical protein AQ_1072
Length = 144
Score = 34.7 bits (78), Expect = 0.56
Identities = 15/65 (23%), Positives = 39/65 (59%), Gaps = 4/65 (6%)
Query: 19 TAVTEADRPAKGRSLYQRLSELEKTGMSASQTLDQYISEGKVAGKKELMSIVKELRKYRR 78
+ +T+ + K + LYQRL++ G++ + L + + + K +K ++ +++E+ KY
Sbjct: 14 SCITKVEEHYKLKELYQRLNQ----GINVEEVLKETVEDYKEKMEKYILEVLEEIEKYCE 69
Query: 79 FQDAL 83
++++L
Sbjct: 70 YRESL 74
>OGT1_RAT (P56558) UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase 110 kDa subunit (EC
2.4.1.-) (O-GlcNAc transferase p110 subunit)
Length = 1036
Score = 34.7 bits (78), Expect = 0.56
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Query: 186 ELVHDMKERNIPMSAFAYHAWMNSYAALNDLVGV---EKIYELMKLEVETKIDWLTYSNL 242
+L D R I + A+ N AL + V E Y T D L +NL
Sbjct: 266 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL--NNL 323
Query: 243 AAIYVKAKQFEKAELMLRKLEQAVKPRKREAYHCLLSLYAGTGNLEKVYSLWDSLKSVTP 302
A I + E+A + RK + V P A+ L S+ G L++ + ++P
Sbjct: 324 ANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 382
Query: 303 VLNVSYLCMISALKRLNDMEGLIRCF 328
+Y M + LK + D++G ++C+
Sbjct: 383 TFADAYSNMGNTLKEMQDVQGALQCY 408
>OGT1_HUMAN (O15294) UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase 110 kDa subunit (EC
2.4.1.-) (O-GlcNAc transferase p110 subunit)
Length = 1036
Score = 34.7 bits (78), Expect = 0.56
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Query: 186 ELVHDMKERNIPMSAFAYHAWMNSYAALNDLVGV---EKIYELMKLEVETKIDWLTYSNL 242
+L D R I + A+ N AL + V E Y T D L +NL
Sbjct: 266 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL--NNL 323
Query: 243 AAIYVKAKQFEKAELMLRKLEQAVKPRKREAYHCLLSLYAGTGNLEKVYSLWDSLKSVTP 302
A I + E+A + RK + V P A+ L S+ G L++ + ++P
Sbjct: 324 ANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 382
Query: 303 VLNVSYLCMISALKRLNDMEGLIRCF 328
+Y M + LK + D++G ++C+
Sbjct: 383 TFADAYSNMGNTLKEMQDVQGALQCY 408
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I
Length = 1261
Score = 33.1 bits (74), Expect = 1.6
Identities = 18/74 (24%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Query: 127 LAMNKYTYGALLNCYCKELMVNKALAHFDKMNELGY--VTFLSFNNLIGMYMRLGQPLKV 184
+++N Y AL+ + K M++KA +FD + G ++ N++ Y+ + K
Sbjct: 1141 VSLNAYIVNALIKGFTKVGMISKARYYFDLLECEGMSGKEPSTYENMVRAYLSVNDGRKA 1200
Query: 185 HELVHDMKERNIPM 198
E+V +K + P+
Sbjct: 1201 MEIVEQLKRKRYPL 1214
Score = 31.6 bits (70), Expect = 4.8
Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 13/209 (6%)
Query: 168 FNNLIGMYMRLGQPLKVHELVHDMKERNIPMSAFAYHAWMNSYAALNDLVGVEKIYELMK 227
+N ++ R + + +L +MKE + ++ Y +N+ + D EK++ M+
Sbjct: 929 YNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEME 988
Query: 228 LEVETKIDWLTYSNLAAIYVKAK-QFEKAELMLRKLEQAVKPRKREAYHCLLSLY----- 281
+ + Y+ + V+ EKA +L Y L+ Y
Sbjct: 989 NQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDAYGTLKP 1048
Query: 282 AGTGNLEKVYSLWDSLKSVTPVLNVSYLCMISALKR-LNDMEGLIRCFKEWESRYG---- 336
G+++ V L + ++ P+L++ Y I L ++D++ C+ +++
Sbjct: 1049 VNVGSVKAVLELME--RTDVPILSMHYAAYIHILGNVVSDVQAATSCYMNALAKHDAGEI 1106
Query: 337 HCDLRLISAVISAYLSHDMSEEAALVFKD 365
D L + I + +++D E + D
Sbjct: 1107 QLDANLFQSQIESLIANDRIVEGIQIVSD 1135
>IF2A_THEVO (Q97BP2) Probable translation initiation factor 2 alpha
subunit (eIF-2-alpha)
Length = 254
Score = 33.1 bits (74), Expect = 1.6
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 190 DMKERNIPMSAFAYHAWMNSYAALNDLVGVEKIYELMKLEVETKIDWLTYSNLAA--IYV 247
++ + NI + + + +Y+ +D GVEKI E++ + E L Y I V
Sbjct: 162 EVAKENITIPEVSVAGYFEAYSLASD--GVEKIKEVLTIPPEIGKAELEYVGAPRYRIVV 219
Query: 248 KAKQFEKAELMLRKLEQAVKPRKRE 272
+ K ++KAE L+K+ Q+V + ++
Sbjct: 220 RDKDYKKAEETLKKIVQSVTDKAKK 244
>IF2A_THEAC (Q9HIX3) Probable translation initiation factor 2 alpha
subunit (eIF-2-alpha)
Length = 254
Score = 33.1 bits (74), Expect = 1.6
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 190 DMKERNIPMSAFAYHAWMNSYAALNDLVGVEKIYELMKLEVETKIDWLTYSNLAA--IYV 247
++ + NI + + + Y+ +D GVE+I E++ + +T L Y I V
Sbjct: 162 EIAKENITIPEVSVSGYFEVYSLASD--GVERIKEVLTIPEDTGKVELEYVGAPRYRIVV 219
Query: 248 KAKQFEKAELMLRKLEQAVKPRKRE 272
K K ++KAE +L+K+ Q V + ++
Sbjct: 220 KDKDYKKAEEILKKVVQIVNEKAKK 244
>N145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-)
(Nuclear pore protein NUP145) [Contains: Nucleoporin
NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)]
Length = 1317
Score = 32.7 bits (73), Expect = 2.1
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 219 VEKIYELMK----------LEVETKIDWLTYSNLAAIYVKAKQFEKAELMLRKLEQAVKP 268
+ KIY+L+ E+E++ WL NL Y + ++ L+ L++ P
Sbjct: 960 ISKIYKLLSGSPFEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLP 1019
Query: 269 RKREAYHCLLSLYAGTGNLEKVYSLWDSLKSVTPVLNVSYLCMISALKRLN 319
+ + LYA N EK+Y ++ T L+V + + R N
Sbjct: 1020 YD-DPIGVIFQLYAANENTEKLYK---EVRQRTNALDVQFCWYLIQTLRFN 1066
>S24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related
protein A) (Fragment)
Length = 1078
Score = 32.0 bits (71), Expect = 3.7
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 138 LNCYCKELMVNKALAHFDKMNELGYVTFLSFNNLIGMYMRLGQPLKVHELVHDMKERNIP 197
LN C+ L+ N L + ++G++TF S + G+ L QP + +V D+++ IP
Sbjct: 507 LNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQESLSQPQML--IVSDIEDVFIP 564
Query: 198 M 198
M
Sbjct: 565 M 565
>HSS_RHILO (Q98H64) Homospermidine synthase (EC 2.5.1.44) (HSS)
Length = 485
Score = 32.0 bits (71), Expect = 3.7
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 401 ALSEVVGDEWRPTPRVLRAFVKYYKEETDL-DGVDELSKILMTHNFDDSWLQSSIAAAES 459
+L E+ G +P P V + +E +L DGVDEL +L H+ + W S ++ AE+
Sbjct: 342 SLDEMFGAAGKPQP------VHHVLDENELVDGVDELGVLLYGHDKNAYWYGSQLSLAEA 395
>HS49_YEAST (Q99181) HSH49 protein
Length = 213
Score = 32.0 bits (71), Expect = 3.7
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 16/158 (10%)
Query: 121 FNSLPPLAMNKYTYGALLNCYCKELMVNKALAHFDKMNELGYVTFLSFNNLIGMYMRLGQ 180
F + P+ KY +L Y A F + Y + NN + +Y RL
Sbjct: 29 FIQINPVLRIKYPKDKVLQAY-----QGYAFIEFYNQGDAQYAIKI-MNNTVRLYDRL-- 80
Query: 181 PLKVHELVHDMKERNIP------MSAFAYHAWMNSYAALNDLVGVEKIYELM-KLEVETK 233
+KV ++ + N+P M ++ + A D + KI+ KL E +
Sbjct: 81 -IKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPE 139
Query: 234 IDWLTYSNLAAIYVKAKQFEKAELMLRKLEQAVKPRKR 271
I +L+ L YV + FEKA+L ++ L + R
Sbjct: 140 IFYLSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNR 177
>CAQ2_MOUSE (O09161) Calsequestrin, cardiac muscle isoform precursor
(Calsequestrin 2)
Length = 415
Score = 31.6 bits (70), Expect = 4.8
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 302 PVLNVSYLCMISALKRLNDMEGLIRCFKEWESRYGHCDLRLISAVISAYLSHDMSEEAAL 361
PV V+ + A +R+ D L+ FK +S Y + + + Y+ + + A+
Sbjct: 145 PVEIVNNKLEVQAFERIEDQTKLLGFFKNEDSEY-YKAFQEAAEHFQPYIKFFATFDKAV 203
Query: 362 VFKDAIKKSKGPFFKIREMFMIFFLEKCQLDGAVSHLEAALSEVVGDEWRPTPRVLRAFV 421
K ++K ++ F++ F+++ + + E L E V + RPT R LR
Sbjct: 204 AKKLSLKMNEVGFYEP-------FMDEPNVIPNKPYTEEELVEFVKEHQRPTLRRLRPED 256
Query: 422 KYYKEETDLDGV 433
+ E DL+G+
Sbjct: 257 MFETWEDDLNGI 268
>YTE5_BACAN (Q9RMZ0) Hypothetical cell-wall amidase
pXO2-42/BXB0045/GBAA_pXO2_0045 precursor (EC 3.5.1.-)
Length = 531
Score = 31.2 bits (69), Expect = 6.2
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 402 LSEVVGDEWRPTPRVLRAFVKYYKEETDLDGVDELSKILMTHNF---DDSWLQSSIAAAE 458
+S+ GD W+P V RA + +TD+ D ++ M +F L S + + +
Sbjct: 173 ISKGTGDGWKPNGIVTRAEAVQFIAQTDMKKADTSKRMYMNRHFITYHQPSLSSGVTSNQ 232
Query: 459 SSPEI 463
+P+I
Sbjct: 233 HAPQI 237
>HM39_CAEEL (Q22812) Homeobox protein ceh-39
Length = 399
Score = 31.2 bits (69), Expect = 6.2
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 169 NNLIGMYMRLGQPLKVHELVHDMKERNIPMSAFAYHAWMNSYAALNDLVGVEKIYELMKL 228
N IG L L H ++ ++KE+ IP ++ A S L+DL+ K + +MK
Sbjct: 205 NRQIGDDEELDTQLIAHRILDELKEQCIPQASLAVKVLGRSQGTLSDLLRKPKPWGIMKN 264
Query: 229 EVETKIDWLTYSNLAAIYVKAKQFEKAELMLR 260
T + +L + +A F K E + R
Sbjct: 265 GRGTFQRMANWLDLDPVVRRALCFMKKEDVAR 296
>EMB5_CAEEL (P34703) Abnormal embryogenesis protein 5
Length = 1521
Score = 31.2 bits (69), Expect = 6.2
Identities = 15/61 (24%), Positives = 32/61 (51%), Gaps = 5/61 (8%)
Query: 420 FVKYYKEETDLDGVDELSKILMTHNFDDSWLQSSIAAAESSPEIYPILNEDSVLENLQDD 479
F+ +Y++E D+D + ++ + ++FD+ W S E +IY ++ + L DD
Sbjct: 369 FIGFYRKE-DIDNLLTMNNLWRVYDFDEKWCHLS----EKKNKIYDLMRRMREYQELSDD 423
Query: 480 V 480
+
Sbjct: 424 L 424
>DPOL_PYRSD (Q51334) DNA polymerase (EC 2.7.7.7) (Deep vent DNA
polymerase) [Contains: Endonuclease PI-PspI (EC 3.1.-.-)
(Psp-GDB pol intein)]
Length = 1312
Score = 30.8 bits (68), Expect = 8.1
Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 47/230 (20%)
Query: 211 AALNDLVGVEKIYELMKLEVETKIDWLTYSNLAAIYVKAKQFEKAELMLRKLEQAVKPRK 270
A L+ LVG + ++++ + ++W Y+ K +E+ EL K P +
Sbjct: 331 AQLSRLVG-QPLWDVSRSSTGNLVEW---------YLLRKAYERNELAPNK------PDE 374
Query: 271 REAYHCLLSLYAGTGNLEKVYSLWDSL-----KSVTPVLNVSYLCMISALKRLNDMEGLI 325
RE L YAG E LW+ L +S+ P + +++ L R EG
Sbjct: 375 REYERRLRESYAGGYVKEPEKGLWEGLVSLDFRSLYPSIIITHNVSPDTLNR----EGC- 429
Query: 326 RCFKEWE--SRYGHCDLRLISAVISAYLSHDMSEEAALVFKDAIKKSKGPFFKIREMFMI 383
+E++ GH + I + L + E + K +K SK P
Sbjct: 430 ---REYDVAPEVGHKFCKDFPGFIPSLLKRLLDERQEI--KRKMKASKDP---------- 474
Query: 384 FFLEKCQLDGAVSHLEAALSEVVGDEWRPTPRVLRAFVKYYKEETDLDGV 433
+EK LD ++ + ++ +EW P + VK ++ +DG+
Sbjct: 475 --IEKKMLDYRQRAIKILANSILPEEW--VPLIKNGKVKIFRIGDFVDGL 520
>ADNP_RAT (Q9JKL8) Activity-dependent neuroprotector
(Activity-dependent neuroprotective protein)
Length = 823
Score = 30.8 bits (68), Expect = 8.1
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 26/131 (19%)
Query: 101 YAVHLDLVCKNEGVVAAENYFNSLPP-----LAMNKY-TYGALLN--------C-YCKEL 145
Y+VH + K E V A NY + L N+Y LLN C YC+
Sbjct: 181 YSVHFEKEHKAEKVPAVANYIMKIHNFTSKCLYCNRYLATDTLLNHMLIHGLSCPYCRST 240
Query: 146 M--VNKALAHFDKMN---ELGYVT--FLSFNNLIGMYMRLGQPLKVHELVHDMKERNIPM 198
V K AH ++ E+G T LSF+ + ++ G +H LV R+ P
Sbjct: 241 FNDVEKMAAHMRMVHIDEEMGPKTDSTLSFD----LTLQQGSHTNIHLLVTTYNLRDAPA 296
Query: 199 SAFAYHAWMNS 209
+ AYHA N+
Sbjct: 297 ESVAYHAQNNA 307
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,776,788
Number of Sequences: 164201
Number of extensions: 2222196
Number of successful extensions: 6056
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6042
Number of HSP's gapped (non-prelim): 27
length of query: 483
length of database: 59,974,054
effective HSP length: 114
effective length of query: 369
effective length of database: 41,255,140
effective search space: 15223146660
effective search space used: 15223146660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0239.15