BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0239.1
         (285 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalos...    33  1.0
UVRA_MYCTU (P63380) UvrABC system protein A (UvrA protein) (Exci...    30  6.7
UVRA_MYCBO (P63381) UvrABC system protein A (UvrA protein) (Exci...    30  6.7
UVRA_MICLU (P13567) UvrABC system protein A (UvrA protein) (Exci...    30  8.8

>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome
           subunit 6) (SGN6) (JAB1-containing signalosome subunit
           6) (Vpr interacting protein) (hVIP) (MOV34 homolog)
          Length = 327

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/79 (31%), Positives = 36/79 (44%), Gaps = 4/79 (5%)

Query: 190 AAAAAVGGDETTIRNMGFVVDVARVPTVLTCERRPGDTGIKAVMRWWCGDVELIDWWLFL 249
           AAAAA      T  + G  VD A VP+V+ C    G TG  +V       + + D W+ +
Sbjct: 3   AAAAAAAATNGTGGSSGMEVDAAVVPSVMAC----GVTGSVSVALHPLVILNISDHWIRM 58

Query: 250 AEKGGRRSTHGGGLLAAKE 268
             + GR     G L+  +E
Sbjct: 59  RSQEGRPVQVIGALIGKQE 77


>UVRA_MYCTU (P63380) UvrABC system protein A (UvrA protein)
           (Excinuclease ABC subunit A)
          Length = 972

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 151 NGLSVSPKSRRFAQKVQPMVEVHSVFPLVVGVDRKKLPKAAAAAVGGDETTIR 203
           N L++ P+ +  A +V   +     F L VG++   L +AAA   GG+   IR
Sbjct: 458 NALTLGPREQAIAGQVLKEIRSRLGFLLDVGLEYLSLSRAAATLSGGEAQRIR 510


>UVRA_MYCBO (P63381) UvrABC system protein A (UvrA protein)
           (Excinuclease ABC subunit A)
          Length = 972

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 151 NGLSVSPKSRRFAQKVQPMVEVHSVFPLVVGVDRKKLPKAAAAAVGGDETTIR 203
           N L++ P+ +  A +V   +     F L VG++   L +AAA   GG+   IR
Sbjct: 458 NALTLGPREQAIAGQVLKEIRSRLGFLLDVGLEYLSLSRAAATLSGGEAQRIR 510


>UVRA_MICLU (P13567) UvrABC system protein A (UvrA protein)
           (Excinuclease ABC subunit A)
          Length = 992

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 16/54 (29%), Positives = 27/54 (49%)

Query: 150 FNGLSVSPKSRRFAQKVQPMVEVHSVFPLVVGVDRKKLPKAAAAAVGGDETTIR 203
           F+GL ++ + R+ A +V   +     F L VG++   L + A    GG+   IR
Sbjct: 495 FSGLRLTDRERQIADQVLKEILARLAFLLDVGLEYLNLERPAGTLSGGEAQRIR 548


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,875,070
Number of Sequences: 164201
Number of extensions: 1344753
Number of successful extensions: 2787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2784
Number of HSP's gapped (non-prelim): 4
length of query: 285
length of database: 59,974,054
effective HSP length: 109
effective length of query: 176
effective length of database: 42,076,145
effective search space: 7405401520
effective search space used: 7405401520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)