BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0237.3
         (508 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SPCN_CHICK (P07751) Spectrin alpha chain, brain (Spectrin, non-e...    32  5.1
PRAX_HUMAN (Q9BXM0) Periaxin                                           31  6.6
ALF_BUCAP (Q8K9B2) Fructose-bisphosphate aldolase class II (EC 4...    31  8.6

>SPCN_CHICK (P07751) Spectrin alpha chain, brain (Spectrin,
            non-erythroid alpha chain) (Fodrin alpha chain)
          Length = 2477

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 288  LNEAVEDIRNVKTVSLNAAGPLWLFQLWLNAVFESLL-PARDNPPAVSNTRIDAHRLETL 346
            L EA E  R V+ + L  A     F  W     E L  P R N             ++ L
Sbjct: 2084 LLEAQEHFRKVEDLFLTFAKKASAFNSWFENAEEDLTDPVRCN---------SLEEIKAL 2134

Query: 347  TPAYDA-----SSFEADFRKYFTMFLELKHYRSSFSPYS 380
              A+DA     SS +ADF +   +  ++K +R + +PY+
Sbjct: 2135 REAHDAFRSSLSSAQADFNQLAELDRQIKSFRVASNPYT 2173


>PRAX_HUMAN (Q9BXM0) Periaxin
          Length = 1461

 Score = 31.2 bits (69), Expect = 6.6
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)

Query: 5   PEQTIPLATELKLDESKRVAIPEPPNEAEKRAIWKSQVLIPFSVNGTLRAILGPLKVVKH 64
           PE  +P  +E+KL +   +A+PE     E + +  S++ +P      +  +  P   +  
Sbjct: 492 PEVELPKVSEMKLPKVPEMAVPE-VRLPEVQLLKVSEMKLPKVPEMAVPEVRLPEVQLPK 550

Query: 65  DRPNSLPEEHESFHPSVRGEELILAFQPSYRMPFLNDPK 103
                LPE  E   P VR  E+ L   P  ++P +  PK
Sbjct: 551 VSEMKLPEVSEVAVPEVRLPEVQLPKVPEMKVPEMKLPK 589


>ALF_BUCAP (Q8K9B2) Fructose-bisphosphate aldolase class II (EC
           4.1.2.13) (FBP aldolase)
          Length = 359

 Score = 30.8 bits (68), Expect = 8.6
 Identities = 30/143 (20%), Positives = 56/143 (38%), Gaps = 22/143 (15%)

Query: 39  KSQVLIPFSVNGTLRAILGPLKVVKHDRPNSLPEEHESFHPSVRGEELILAFQPSYRMPF 98
           KS V+I FS  G          +  + R +S   E ++   S+ G + +      Y++P 
Sbjct: 53  KSPVIIQFSYGGASF-------IAGYKRTSSKNPEDQAIQGSISGAQHVHLMSQYYQIPV 105

Query: 99  LNDPKRAFRSAPPNPSANDKAYLKWLDRVEEAKRQHWKDVG----ILDLIQLSRSQVSYN 154
           +                  K  L W+D + E  ++H+K+ G       +I LS+  +  N
Sbjct: 106 ILHTDHC-----------SKEMLPWIDGLLEEGKKHYKNFGKPLFTSHMIDLSKEHLKEN 154

Query: 155 PAMLLSALYFWERSTNCLHVPFG 177
            A+  + L   ++    L +  G
Sbjct: 155 IAICSNYLKKIKKINMILEIELG 177


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,003,584
Number of Sequences: 164201
Number of extensions: 2583788
Number of successful extensions: 5733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5726
Number of HSP's gapped (non-prelim): 12
length of query: 508
length of database: 59,974,054
effective HSP length: 115
effective length of query: 393
effective length of database: 41,090,939
effective search space: 16148739027
effective search space used: 16148739027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)