BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0233.7
         (482 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

XYLT_ARATH (Q9LDH0) Beta-(1,2)-xylosyltransferase (EC 2.4.2.38)        32  3.6
MM13_RABIT (O62806) Collagenase 3 precursor (EC 3.4.24.-) (Matri...    31  6.2

>XYLT_ARATH (Q9LDH0) Beta-(1,2)-xylosyltransferase (EC 2.4.2.38)
          Length = 534

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 360 EWLSSLFSDRRRWVPIYVKSIFWAGMSTTQRSESMNAFFDGYVNSKNLIGTIC 412
           +W S+  S R   +P     +F  G  TTQ  E+  A F G   +KN    +C
Sbjct: 255 DWYSAYVSSRVTGLPNRPHVVFVDGHCTTQLEETWTALFSGIRYAKNFTKPVC 307


>MM13_RABIT (O62806) Collagenase 3 precursor (EC 3.4.24.-) (Matrix
           metalloproteinase-13) (MMP-13)
          Length = 471

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 22/65 (33%), Positives = 34/65 (51%), Gaps = 10/65 (15%)

Query: 307 WHIMKKVPEKLNGLTQYKEIKK---------TLKTLVYDSIEASEFDDG*HKMIEDY-RL 356
           + I++  P+KL+ L   +E+KK         T KTL +   +   +DD  H M +DY RL
Sbjct: 360 YDILEGYPQKLSELGFPREVKKISAAVHFEDTGKTLFFSGNQVWSYDDTNHTMDQDYPRL 419

Query: 357 QENEW 361
            E E+
Sbjct: 420 IEEEF 424


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.358    0.160    0.581 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,240,479
Number of Sequences: 164201
Number of extensions: 1621036
Number of successful extensions: 7269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7267
Number of HSP's gapped (non-prelim): 2
length of query: 482
length of database: 59,974,054
effective HSP length: 114
effective length of query: 368
effective length of database: 41,255,140
effective search space: 15181891520
effective search space used: 15181891520
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 68 (30.8 bits)