BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0229.10
         (277 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810...    71  3e-12
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein     39  0.011
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain...    38  0.031

>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
           (ORF240b)
          Length = 240

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 25/220 (11%)

Query: 1   DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRY------ 54
           DI++TGSS+ L+N  I +L+  F +K LG + +FLGI++K+   G L L+Q +Y      
Sbjct: 9   DILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG-LFLSQTKYAEQILN 67

Query: 55  ------IRDL*AKVNISYGEKLQIPHNRGCSFYGSIAGSLQ*LTITRPEQSYSVKKVC-- 106
                  + +   + +     +        S + SI G+LQ LT+TRP+ SY+V  VC  
Sbjct: 68  NAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQR 127

Query: 107 ---PFMSSLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RSS 163
              P ++      R       T    + +  +S+         S W      G  S R S
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFC-DSDWA-----GCTSTRRS 181

Query: 164 FYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSS 203
               C +L   I I W + +Q  VS SS+E EYR+L L++
Sbjct: 182 TTGFCTFLGCNI-ISWSAKRQPTVSRSSTETEYRALALTA 220


>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
          Length = 308

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 50/218 (22%), Positives = 87/218 (38%), Gaps = 31/218 (14%)

Query: 1   DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
           D+++   S  + +    +L  ++ +K LG ++ FLG+ +   ++G + L+   YI    +
Sbjct: 90  DLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSTNGDITLSLQDYIAKAAS 149

Query: 61  KVNISYGEKLQI-------------PHNRGCSFYGSIAGSLQ*LTIT-RPEQSYSVKKVC 106
           +  I+  +  Q              PH +  + Y SI G L     T RP+ SY V  + 
Sbjct: 150 ESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLS 209

Query: 107 PFMSS-----LHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*R 161
            F+       L  + R      +T S  +   + SQ   +           C   HG+  
Sbjct: 210 RFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQVALTVY---------CDASHGAIH 260

Query: 162 SSFYLRCVY--LLRPILIFWRS*K-QTVVSGSSSEAEY 196
              +    Y  LL    + W S K + V+   S+EAEY
Sbjct: 261 DLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEY 298


>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
            Copia VLP protein; Copia protease (EC 3.4.23.-)]
          Length = 1409

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 25/218 (11%)

Query: 1    DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
            D++I       MNNF   L   F +  L  ++HF+GI ++ + +  + L+Q  Y++ + +
Sbjct: 1090 DVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE-MQEDKIYLSQSAYVKKILS 1148

Query: 61   KVNISYGEKLQIP-----------HNRGCSF-YGSIAGSLQ*LTI-TRPEQSYSVKKVCP 107
            K N+     +  P            +  C+    S+ G L  + + TRP+ + +V  +  
Sbjct: 1149 KFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSR 1208

Query: 108  FMSSLHDSHRTAINASSTNSKA---MSLLASSQACFSR--LSFI-SSWV**C*LGHGS*R 161
            + S  +      +       K    M L+      F    + ++ S W      G    R
Sbjct: 1209 YSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWA-----GSEIDR 1263

Query: 162  SSFYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSL 199
             S       +    LI W + +Q  V+ SS+EAEY +L
Sbjct: 1264 KSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMAL 1301


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.348    0.152    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,047,787
Number of Sequences: 164201
Number of extensions: 864980
Number of successful extensions: 2686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2679
Number of HSP's gapped (non-prelim): 6
length of query: 277
length of database: 59,974,054
effective HSP length: 109
effective length of query: 168
effective length of database: 42,076,145
effective search space: 7068792360
effective search space used: 7068792360
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 65 (29.6 bits)