BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0223.17
         (88 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

HEM6_ARATH (Q9LR75) Coproporphyrinogen III oxidase, chloroplast ...    30  1.4
KC11_MOUSE (Q8BTH8) Casein kinase I, gamma 1 isoform (EC 2.7.1.-...    27  7.0
GLMS_THEMA (Q9WXZ5) Glucosamine--fructose-6-phosphate aminotrans...    27  7.0
TPIS_MYCFL (P48779) Triosephosphate isomerase (EC 5.3.1.1) (TIM)...    27  9.2
SPA4_MOUSE (Q9JJF2) Sperm-associated antigen 4 protein (Outer de...    27  9.2
OM1M_CHLTR (P06597) Major outer membrane protein, serovar L2 pre...    27  9.2

>HEM6_ARATH (Q9LR75) Coproporphyrinogen III oxidase, chloroplast
           precursor (EC 1.3.3.3) (Coproporphyrinogenase) (Coprogen
           oxidase)
          Length = 386

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 21  DEREGYNGNFVYDQVDND-----IITAEVSNGPIPSFATFLERRGHMSQREIHRQLQ 72
           DER G  G F  D  D D         E +N  +P++   +E+R  M   E H+  Q
Sbjct: 263 DERRGLGGIFFDDLNDYDQEMLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQ 319


>KC11_MOUSE (Q8BTH8) Casein kinase I, gamma 1 isoform (EC 2.7.1.-)
           (CKI-gamma 1)
          Length = 459

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 22  EREGYNGNFVYDQVDNDIITAEVSNGPIPSFATFLERRGH------MSQREIHRQLQADL 75
           ER+GY  ++ YD V   I T  V +  + S A+ + R  H        Q+ +  Q  +  
Sbjct: 316 ERKGYTFDYAYDWVGRPIPT-PVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSE 374

Query: 76  VEHIWELSESR 86
               WE+  SR
Sbjct: 375 RRGEWEIQPSR 385


>GLMS_THEMA (Q9WXZ5) Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] (EC 2.6.1.16)
           (Hexosephosphate aminotransferase)
           (D-fructose-6-phosphate amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 605

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 42  AEVSNGPIPSFAT---FLERRGHMSQREIHRQLQADLVEHIWE 81
           A V NG I ++     FLE+RGH+   E   ++ A LVE  +E
Sbjct: 95  AVVHNGIIENYREIREFLEQRGHVFSSETDTEVIAHLVEEEFE 137


>TPIS_MYCFL (P48779) Triosephosphate isomerase (EC 5.3.1.1) (TIM)
           (Triose-phosphate isomerase)
          Length = 242

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 34  QVDNDIITAEVSNGPIPSFATFLERRGHMSQREIHRQLQADLVEHI 79
           Q D+   T E+S   +   A      GH  +REI +++  DL   I
Sbjct: 71  QFDSGAFTGEISAKMLQDLAVHYVIIGHSERREIFKEIGEDLTNKI 116


>SPA4_MOUSE (Q9JJF2) Sperm-associated antigen 4 protein (Outer dense
           fiber-associated protein SPAG4)
          Length = 443

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 14  LHNMIVEDEREGYNGNFVYDQVDNDIITAEVSNGPIPSF 52
           ++ +  +DE E + G F++D   ++I T  + N P  +F
Sbjct: 360 VYGLQADDETEVFLGKFIFDVQKSEIQTFHLQNDPPSAF 398


>OM1M_CHLTR (P06597) Major outer membrane protein, serovar L2
          precursor (MOMP)
          Length = 394

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 18/32 (55%)

Query: 23 REGYNGNFVYDQVDNDIITAEVSNGPIPSFAT 54
          R GY G+FV+D+V    +  E   G  P+ AT
Sbjct: 61 RMGYYGDFVFDRVLQTDVNKEFQMGAKPTTAT 92


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.327    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,632,115
Number of Sequences: 164201
Number of extensions: 325789
Number of successful extensions: 1023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 59,974,054
effective HSP length: 64
effective length of query: 24
effective length of database: 49,465,190
effective search space: 1187164560
effective search space used: 1187164560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)