BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0221.5
         (190 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YGP0_YEAST (P53115) Hypothetical 171.5 kDa helicase in NUT1-ARO2...    31  1.5

>YGP0_YEAST (P53115) Hypothetical 171.5 kDa helicase in NUT1-ARO2
            intergenic region
          Length = 1489

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 23/76 (30%), Positives = 35/76 (45%), Gaps = 7/76 (9%)

Query: 115  LKDEVFMYQRTYITKVLKGFYMDKSCPLCTLLILRSLNVNKDPFRP*EKNEELLDPEVLY 174
            L  E   Y+R Y+  + +G++ + S P  T+ +L S +V          N EL DP +  
Sbjct: 1191 LNVEKHAYEREYLNCIQRGYHPNVSAPPVTIEVLGSSHVTN------SINNELFDPLISQ 1244

Query: 175  -LSAIKALLYLASHCK 189
             LS I A+     H K
Sbjct: 1245 ALSDIPAITQYNMHVK 1260


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.359    0.163    0.534 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,127,351
Number of Sequences: 164201
Number of extensions: 532559
Number of successful extensions: 2021
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2021
Number of HSP's gapped (non-prelim): 1
length of query: 190
length of database: 59,974,054
effective HSP length: 104
effective length of query: 86
effective length of database: 42,897,150
effective search space: 3689154900
effective search space used: 3689154900
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 62 (28.5 bits)