Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0218.25
         (334 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ZFL1_HUMAN (O95159) Zinc finger protein-like 1 (Zinc-finger prot...    95  3e-19
ZFL1_MOUSE (Q9DB43) Zinc finger protein-like 1                         94  4e-19
ZFL1_BRARE (P62447) Zinc finger protein-like 1                         92  2e-18
NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130...    36  0.15
BRC2_RAT (O35923) Breast cancer type 2 susceptibility protein ho...    35  0.20
RH2A_ARATH (Q9ZT50) RING-H2 zinc finger protein RHA2a                  34  0.59
MIZF_MOUSE (Q8K1K9) MBD2-interacting zinc finger protein (Methyl...    34  0.59
Y745_ARATH (P59278) Hypothetical protein At1g51745                     33  0.77
VCO7_ADEB2 (Q96624) Major core protein precursor (Protein VII) (...    33  1.3
ICA5_MOUSE (Q60625) Intercellular adhesion molecule-5 precursor ...    33  1.3
TUL4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily prot...    32  1.7
TBC1_MOUSE (Q60949) TBC1 domain family member 1                        32  2.2
R103_RAT (Q9EPZ8) RING finger protein 103 (Zinc finger protein 1...    32  2.2
R103_MOUSE (Q9R1W3) RING finger protein 103 (Zinc finger protein...    32  2.2
R103_HUMAN (O00237) RING finger protein 103 (Zinc finger protein...    32  2.2
HIK2_MOUSE (Q9QZR5) Homeodomain-interacting protein kinase 2 (EC...    32  2.2
SYM_HALN1 (Q9HSA4) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...    32  2.9
BRC2_MOUSE (P97929) Breast cancer type 2 susceptibility protein ...    32  2.9
POK_DROME (Q01842) Ets DNA-binding protein pokkuri (Protein yan)...    31  5.0
PAK4_HUMAN (O96013) Serine/threonine-protein kinase PAK 4 (EC 2....    31  5.0

>ZFL1_HUMAN (O95159) Zinc finger protein-like 1 (Zinc-finger protein
           MCG4)
          Length = 310

 Score = 94.7 bits (234), Expect = 3e-19
 Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 9/128 (7%)

Query: 1   MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVIRTYSEWVIDGEYDWPPKCCQCQ 58
           M +CKC  RK T L+CF H+V VC  C+    H  C++++Y +W+ D +Y+  P C  C 
Sbjct: 1   MGLCKCPKRKVTNLFCFEHRVNVCEHCLV-ANHAKCIVQSYLQWLQDSDYN--PNCRLCN 57

Query: 59  AVLEEGDGSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCSTSIWPPKSVKDS- 117
             L      +TTRL C  + H  CL       P +TAPAGY CP+C+  I+PP ++    
Sbjct: 58  IPLAS---RETTRLVCYDLFHWACLNERAAQLPRNTAPAGYQCPSCNGPIFPPTNLAGPV 114

Query: 118 GSRLHSKL 125
            S L  KL
Sbjct: 115 ASALREKL 122


>ZFL1_MOUSE (Q9DB43) Zinc finger protein-like 1
          Length = 310

 Score = 94.4 bits (233), Expect = 4e-19
 Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 9/128 (7%)

Query: 1   MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVIRTYSEWVIDGEYDWPPKCCQCQ 58
           M +CKC  RK T L+CF H+V VC  C+    H  C++++Y +W+ D +Y+  P C  C 
Sbjct: 1   MGLCKCPKRKVTNLFCFEHRVNVCEHCLV-ANHAKCIVQSYLQWLQDSDYN--PNCRLCN 57

Query: 59  AVLEEGDGSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCSTSIWPPKSVKDS- 117
             L      +TTRL C  + H  C+       P +TAPAGY CP+C+  I+PP ++    
Sbjct: 58  TPLAS---RETTRLVCYDLFHWACINERAAQLPRNTAPAGYQCPSCNGPIFPPANLAGPV 114

Query: 118 GSRLHSKL 125
            S L  KL
Sbjct: 115 ASALREKL 122


>ZFL1_BRARE (P62447) Zinc finger protein-like 1
          Length = 317

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 8/116 (6%)

Query: 1   MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVIRTYSEWVIDGEYDWPPKCCQCQ 58
           M +CKC  +K T L+CF H+V VC  C+    H  C++++Y +W+ D +Y+  P C  C 
Sbjct: 1   MGLCKCPKKKVTNLFCFKHRVNVCEHCLV-SNHNKCIVQSYLQWLQDSDYN--PNCSLC- 56

Query: 59  AVLEEGDGSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCSTSIWPPKSV 114
             ++  D   T RL C  + H +CL       P +TAP GY CPTC   ++PP+++
Sbjct: 57  --IQPLDSQDTVRLVCYDLFHWSCLNELASHQPLNTAPDGYQCPTCQGPVFPPRNL 110


>NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130
           kDa protein) (140 kDa nucleolar phosphoprotein)
           (Nopp140) (Nucleolar and coiled-body phosphoprotein 1)
          Length = 699

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 16/200 (8%)

Query: 102 PTCSTSIWPPKSVKDSGSRLHSKLKEAIMQTGMEKNIFGNHPVSLSVTESRSPPPAFASE 161
           P    +  PPK  K S S   S  ++   +    K      PV++       P PA A+ 
Sbjct: 152 PQAKAAKAPPKKAKSSDSDSDSSSEDEPPKNQKPKIT----PVTVKAQTKAPPKPARAAP 207

Query: 162 PLIGRENHGNSDSPATGSEPPKLSVTDIVEIEGANSAGNFVKGSSPVGPATRKGAFNVER 221
            +   +   +S S ++ S     S  D  E + A +    V     V  A  K A    R
Sbjct: 208 KIANGKAASSSSSSSSSS-----SSDDSEEEKAAATPKKTVPKKQVVAKAPVKAATTPTR 262

Query: 222 QNSEISYYADDEDGNRKKYTKRGPFYHKFLRALLPFWSSALPTLPV-TAPPRK--DASNA 278
           ++S     + DE+  +KK  K  P  + +     P  S+  P   + T PP+K  +    
Sbjct: 263 KSSSSEDSSSDEEEEQKKPMKNKPGPYSY----APPPSAPPPKKSLGTQPPKKAVEKQQP 318

Query: 279 TEGSEGRTRHQRSSRMDPRK 298
            E SE  +    SS  + +K
Sbjct: 319 VESSEDSSDESDSSSEEEKK 338


>BRC2_RAT (O35923) Breast cancer type 2 susceptibility protein
           homolog
          Length = 3343

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 217 FNVERQNSEISYYADDEDGNRKKYTKRGPFYHKFLRALLPFWSSALPTLPVTAPPRKDAS 276
           +N E    E  Y     +    K  +R P YH+F    + F   +  TLP+   P K+  
Sbjct: 42  YNTEHPE-ESEYKPQGHEPQLFKTPQRNPSYHQFASTPIMFKEQS-QTLPLDQSPFKELG 99

Query: 277 NATEGSEGRTRHQRSSRMDPRKILLLIAIMAC 308
           N    S+ +   ++ +R DP   +  + + AC
Sbjct: 100 NVVANSKRKHHSKKKARKDPVVDVASLPLKAC 131


>RH2A_ARATH (Q9ZT50) RING-H2 zinc finger protein RHA2a
          Length = 155

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 9/55 (16%)

Query: 54  CCQCQAVLEEGDGSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCSTSI 108
           C  C + L+EG+  +  +L C HV H  CL   +  F        + CP C +++
Sbjct: 86  CVVCLSKLKEGE--EVRKLECRHVFHKKCLEGWLHQF-------NFTCPLCRSAL 131


>MIZF_MOUSE (Q8K1K9) MBD2-interacting zinc finger protein
           (Methyl-CpG-binding protein 2-interacting zinc finger
           protein)
          Length = 503

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 26/83 (31%), Positives = 35/83 (41%), Gaps = 11/83 (13%)

Query: 29  PEHQICVIRTYSEWVIDG------EYDWPPKCCQCQAVLEEGDGSQTTRLGCLHVIHTNC 82
           P+H +C+   + E V D         D    CC+ QAV ++    Q    GC       C
Sbjct: 122 PDHFLCLWE-HCESVFDNPEWFYRHVDAHSLCCEYQAVSKDNHVVQCGWKGCTCTFKDRC 180

Query: 83  -LVSHIKSFPPHTAPAGYACPTC 104
            L  H++S   HT     ACPTC
Sbjct: 181 KLREHLRS---HTQEKVVACPTC 200


>Y745_ARATH (P59278) Hypothetical protein At1g51745
          Length = 597

 Score = 33.5 bits (75), Expect = 0.77
 Identities = 24/68 (35%), Positives = 28/68 (40%), Gaps = 1/68 (1%)

Query: 145 SLSVTESRSPPPAFASEPLIGRENHGNSDSPATG-SEPPKLSVTDIVEIEGANSAGNFVK 203
           S+SV+            PL G ENH      A   S P K  VTD+    G NS   FVK
Sbjct: 357 SISVSAEDDSSDRLFDVPLTGEENHSEGFPAACRISSPRKALVTDLTRRCGRNSHNVFVK 416

Query: 204 GSSPVGPA 211
             +  G A
Sbjct: 417 NEASNGSA 424


>VCO7_ADEB2 (Q96624) Major core protein precursor (Protein VII)
           (pVII)
          Length = 183

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/64 (32%), Positives = 32/64 (49%), Gaps = 2/64 (3%)

Query: 260 SALPTLPVTAPPRKDASNATEGSEGRTRHQRSSRMDPRKILLLIAIMACMATMGILYYRL 319
           + +PT+P+T  P  D  NA   +EG TR +R +    R+     A+ A  A +     RL
Sbjct: 50  TTVPTVPITDDPVADVVNAI--AEGTTRRRRRAERRRRRRQATSAMRAARALVRSARRRL 107

Query: 320 VQRG 323
            +RG
Sbjct: 108 ARRG 111


>ICA5_MOUSE (Q60625) Intercellular adhesion molecule-5 precursor
           (ICAM-5) (Telencephalin)
          Length = 917

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 56  QCQAVLEEGDGSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCSTSIWPPKSV 114
           +C A    G  S+T  +G    +    +V+ + + PP   P G    TC    WPP  +
Sbjct: 723 RCVATNAHGTDSRTVTVG----VEYRPVVAELAASPPSVRPGGNFTLTCRAEAWPPAQI 777


>TUL4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)
          Length = 1544

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 32/129 (24%), Positives = 55/129 (41%), Gaps = 6/129 (4%)

Query: 93   HTAPAGYACPTCSTSIW-PPKSVKDSGSRLHSKLKE--AIMQ-TGMEKNIFGNHPVSLSV 148
            HTA A       S S+  PP S +D    ++S   E  A+ Q   +EK +   HP     
Sbjct: 1056 HTASASPLASQSSYSLLSPPDSARDRTDYVNSAFTEDEALSQHCQLEKPL--RHPPLPEA 1113

Query: 149  TESRSPPPAFASEPLIGRENHGNSDSPATGSEPPKLSVTDIVEIEGANSAGNFVKGSSPV 208
              +   PP +  +P++G +     +  A  S P  L ++ ++  +G +   + +   SP 
Sbjct: 1114 AVTLKRPPPYQWDPMLGEDVWVPQERTAQTSGPNPLKLSSLMLSQGQHLDVSRLPFISPK 1173

Query: 209  GPATRKGAF 217
             PA+    F
Sbjct: 1174 SPASPTATF 1182


>TBC1_MOUSE (Q60949) TBC1 domain family member 1
          Length = 1255

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 41/190 (21%), Positives = 67/190 (34%), Gaps = 9/190 (4%)

Query: 76  HVIHTNCLVSHIKSFPPHTAPAGYACPTCSTSIWPPKSVKDSGSRLHSKLKEAIMQTGME 135
           H+   + L+S  ++F        +    C     P +S      R   +      +T  E
Sbjct: 570 HIAEESALLSPQQAFRRRANTLSHFPVECPAPPEPAQSSPGVSQRKLMRYHSVSTETPHE 629

Query: 136 KNIF---GNHPVSLSVTESRSPPPAF---ASEPLIGRENHGNSDSPATGSEPPK-LSVTD 188
           +N+    G          S  PPP     AS P   +    NS    +G+  PK +S  +
Sbjct: 630 RNVDHLPGGESQGCPGQPSAPPPPRLNPSASSPNFFKYLKHNSSGEQSGNAVPKSVSYRN 689

Query: 189 IV--EIEGANSAGNFVKGSSPVGPATRKGAFNVERQNSEISYYADDEDGNRKKYTKRGPF 246
            +  ++  ++S  NF+K  +PV         N  R     + +  D DG   K  +    
Sbjct: 690 ALRKKLHSSSSVPNFLKFLAPVDENNTCDFKNTNRDFESKANHLGDTDGTPVKTRRHSWR 749

Query: 247 YHKFLRALLP 256
              FLR   P
Sbjct: 750 QQIFLRVATP 759


>R103_RAT (Q9EPZ8) RING finger protein 103 (Zinc finger protein 103)
           (Zfp-103) (ADRG34 protein)
          Length = 682

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 21/65 (32%), Positives = 26/65 (39%), Gaps = 14/65 (21%)

Query: 50  WPP---KCCQCQAVLEEGD-GSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCS 105
           WP     C +C   LE  + G     L C HV H NC+V  +       A   + CP C 
Sbjct: 608 WPAGTLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWL-------AGGRHCCPVCR 660

Query: 106 TSIWP 110
              WP
Sbjct: 661 ---WP 662


>R103_MOUSE (Q9R1W3) RING finger protein 103 (Zinc finger protein
           103) (Zfp-103) (KF-1) (mKF-1)
          Length = 683

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 21/65 (32%), Positives = 26/65 (39%), Gaps = 14/65 (21%)

Query: 50  WPP---KCCQCQAVLEEGD-GSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCS 105
           WP     C +C   LE  + G     L C HV H NC+V  +       A   + CP C 
Sbjct: 609 WPAGTLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWL-------AGGRHCCPVCR 661

Query: 106 TSIWP 110
              WP
Sbjct: 662 ---WP 663


>R103_HUMAN (O00237) RING finger protein 103 (Zinc finger protein
           103 homolog) (Zfp-103) (KF-1) (hKF-1)
          Length = 685

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 21/65 (32%), Positives = 26/65 (39%), Gaps = 14/65 (21%)

Query: 50  WPPK---CCQCQAVLEEGD-GSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCS 105
           WP     C +C   LE  + G     L C HV H NC+V  +       A   + CP C 
Sbjct: 611 WPADMLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWL-------AGGRHCCPVCR 663

Query: 106 TSIWP 110
              WP
Sbjct: 664 ---WP 665


>HIK2_MOUSE (Q9QZR5) Homeodomain-interacting protein kinase 2 (EC
           2.7.1.-) (Nuclear body associated kinase 1) (Sialophorin
           tail associated nuclear serine/threonine kinase)
          Length = 1196

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 23/83 (27%), Positives = 35/83 (41%), Gaps = 7/83 (8%)

Query: 83  LVSHIKSFPPHTAPAGYACPTCSTSIWPPKSVKDSGSRLHSKLKEAIMQTGMEKNIFGNH 142
           + SH++ F PHT  +   C      + P  +   +G   HSK+          KNI  + 
Sbjct: 8   MASHVQVFSPHTLQSSAFCSVKKLKVEPSSNWDMTGYGSHSKV------YSQSKNIPPSQ 61

Query: 143 PVSLSVTESRS-PPPAFASEPLI 164
           P S +V+ S   P P+   E  I
Sbjct: 62  PASTTVSTSLPIPNPSLPYEQTI 84


>SYM_HALN1 (Q9HSA4) Methionyl-tRNA synthetase (EC 6.1.1.10)
           (Methionine--tRNA ligase) (MetRS)
          Length = 689

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 15/80 (18%)

Query: 29  PEHQICVIRTYSEWVIDGEYDWPPKCCQCQAVLEEGDGSQTTRLGCLHVIHTNCLVSHIK 88
           P   +   + YSE V   E+DW        +V ++GDG        +HVI  + +  H  
Sbjct: 263 PIEYVAATKQYSERVGTEEFDW-------ASVWKDGDGE------IIHVIGRDIIQHHTV 309

Query: 89  SFPPHTAPAGYACP--TCST 106
            +P   A A YA P   C+T
Sbjct: 310 FWPSMLAGADYAEPRAVCAT 329


>BRC2_MOUSE (P97929) Breast cancer type 2 susceptibility protein
           homolog
          Length = 3329

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 16/117 (13%)

Query: 104 CSTSIWPPKSVKDSGSRLHS-KLKEAIMQTGMEKNIFGNHPVSLSVTESRSPPPAFASEP 162
           C+ ++   +    SGS  ++ KLKE      + +++       +S T S + PP  +S  
Sbjct: 141 CTQAVLQREKPVVSGSLFYTPKLKEGQTPKPISESLGVEVDPDMSWTSSLATPPTLSSTV 200

Query: 163 LIGRENHGNS-----DSPAT-------GSEPPK---LSVTDIVEIEGANSAGNFVKG 204
           LI R+    S     DSPAT        +E P+    SV  +++ E  N    F +G
Sbjct: 201 LIARDEEARSSVTPADSPATLKSCFSNHNESPQKNDRSVPSVIDSENKNQQEAFSQG 257



 Score = 30.4 bits (67), Expect = 6.5
 Identities = 15/58 (25%), Positives = 29/58 (49%), Gaps = 1/58 (1%)

Query: 239 KYTKRGPFYHKFLRALLPFWSSALPTLPVTAPPRKDASNATEGSEGRTRHQRSSRMDP 296
           K  +R P YH+F    + F   +  TLP+   P ++       S+ +T  ++ +++DP
Sbjct: 63  KTPQRNPPYHQFASTPIMFKERS-QTLPLDQSPFRELGKVVASSKHKTHSKKKTKVDP 119


>POK_DROME (Q01842) Ets DNA-binding protein pokkuri (Protein yan)
           (Protein anterior open)
          Length = 732

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 46/228 (20%), Positives = 79/228 (34%), Gaps = 31/228 (13%)

Query: 92  PHTAPAGYACPTCSTSIWPPKSVKDSGSRLHSKLKEAIMQTGMEKNIFGNHPVSLSVTES 151
           PH+ P         T  WPP +     S  HS          M  N     P     +++
Sbjct: 139 PHSHPP--------TPTWPPLNAPPENSPFHSSAHSLAGHHFMAPNSVTLSPPPSVDSQA 190

Query: 152 RSPPPAFASEPLIGRENHGNSDSPATGSEPPKLSVTDIVEIEGANSAGNFVKGSSP-VGP 210
            SPP A    P       G +   A GS P     T+      ++++     GS P + P
Sbjct: 191 SSPPQA----PYQNGGATGAAPGSAGGSAPAAGGATNTSNPTSSSASSTGSNGSQPNIMP 246

Query: 211 ATRKGAFNVERQNSEISYYADDEDGNRK------KYTKRGPFYHKFLRALLPFWSSALPT 264
                + +    +SE   Y++   G  K       Y+   P     L+ + P W+  L  
Sbjct: 247 MKGISSASSNHSDSE-EEYSETSGGVSKMPPAPLSYSTASPPGTPILKDIKPNWTQQLTN 305

Query: 265 LPVTAPPRKD-----------ASNATEGSEGRTRHQRSSRMDPRKILL 301
             V +  ++            A+ A +  + + + Q+  +  P+K+ L
Sbjct: 306 SFVNSWSQQQQQQQQQQAAAVAAVAAQAQQHQLQQQQQQQQLPQKLTL 353


>PAK4_HUMAN (O96013) Serine/threonine-protein kinase PAK 4 (EC
           2.7.1.37) (p21-activated kinase 4) (PAK-4)
          Length = 591

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 26/188 (13%)

Query: 102 PTCSTSIWP--PKSVKDSGSRLHSKLKEAIMQTGMEKNIFGNHPVSLSVTESRSPPPAFA 159
           P C TSI P  PK++     R     K+  +   +++  F N  V+ S +  R  PP   
Sbjct: 56  PACITSIQPGAPKTIV----RGSKGAKDGALTLLLDE--FENMSVTRSNSLRRDSPPP-- 107

Query: 160 SEPLIGRENHGNSDSPATGSE--PPKLSVTDIVEIEGANSAGNFVKGS-SPVGPATRKGA 216
             P   R+ +G  + PAT +   P K           A S G F   S +  G   R+ A
Sbjct: 108 --PARARQENGMPEEPATTARGGPGK-----------AGSRGRFAGHSEAGGGSGDRRRA 154

Query: 217 FNVERQNSEISYYADDEDGNRKKYTKRGPFYHKFLRALLPFWSSALPTLPVTAPPRKDAS 276
              +R  S        ++ +R K    GP       A L   +      P    PR D  
Sbjct: 155 GPEKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPFNTYPRADTD 214

Query: 277 NATEGSEG 284
           + + G++G
Sbjct: 215 HPSRGAQG 222


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,561,416
Number of Sequences: 164201
Number of extensions: 1916536
Number of successful extensions: 4703
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4684
Number of HSP's gapped (non-prelim): 39
length of query: 334
length of database: 59,974,054
effective HSP length: 111
effective length of query: 223
effective length of database: 41,747,743
effective search space: 9309746689
effective search space used: 9309746689
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)


Lotus: description of TM0218.25